diffusione slide.pdf
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diffTRANSCRIPT
“Although living systems obey the laws of physics and chemistry,the notion of function or purpose
differentiate biology from other natural sciences”Hartwell, Hopfield, Leibner, Murray, Nature 402, c47-c52 (1999)
Luigi Preziosi
calvino.polito.it/~preziosi
Mathematical Models inMedicine and Biology
Identificationof therapeutic
protocols
Clinicalpractice
Clinical trials
In vitro models
In vivo models
Simulations(in silicomodels)
Mathematical models
Modelling cycle in medicine
Deduction of the mathematical model
Simulation ofunknown cases
and newphenomena
Independent variables
Dependentvariables
Parameters
Qualitative analysis
Simulation of known cases
Experimental validation
No
Yes
Modelling cycle for medicine
Phenomenological observation
N(t) o r(t)Number of cells on a Petri dish
r(x, t) Spatial distribution of cells
N(t, a)Distribution of cells over the cell cycle
N(t), M(t)Different cells on a Petri dish
Choice of variables
Population in a country
r(x, t) Spatial localization of the population
N(t, a)Age-structured population
M(t), F(t), B(t), A(t)Sexual population
M(t, a), F(t, a)Age-structured sexual population
N(t) o r(t)
Choice of variables
Population in a country
Natural birth and death rates
Diffusion of diseases
Immigration
Other equation for thediffusion of the disease ??
N(t) o r(t)
Dependence ??
Moving
r(x, t) Spatial localization of the population
Introducing sex or age ??
Dependence ??
Mating
Choice of effects and parameters
“All models are a simplification, an idealization, and consequently a falsification, of reality….’’
Alan Turing
“…It is to be hoped that the features retained for discussion are those of the greatest importance in the present state of knowledge.”
“All models are wrong…some are useful”Box & Draper
“All decisions are based on models…and all models are wrong”
Sterman
“Although knowledge is incomplete, nonetheless decisions have to be made. Modeling…takes place in the effort to plan clinical trials or understand their results. Formal modeling should improve that effort, but cautious consideration of the assumptions is demanded”
Day, Shackness & Peters
volume ratio
Volu
me
of
the
sam
ple
Volu
me
of
the
con
stit
uen
t
Macroscopic and individual based models
j
u
Diffusion equation
density of cells changes
because of birth/death
because of influx/outflux
j
Diffusion equation
Fick’s law
If D is constant
# cells in the node at time t = # cells in the node at preceding time
# cells coming from neighbours+
# cells going to neighbours_
Diffusion equation
DyDx(i,j+1)
(i,j-1)
(i-1,j) (i+1,j)(i,j)
# cells in the node at time t = # cells in the node at preceding time
# cells coming from neighbours+
# cells going to neighbours_
Original at ocw.mit.edu/ans7870/1/1.061/f04/animation/walk2.avi
Diffusion equation
Random walk
Dx j - 1 j + 1j
j + 2j - 2
Constant coefficients
If
Dx → 0
Looking here
If
Dx → 0
Looking in the middle
If
Dx → 0
Looking in the middle
If
Dx → 0
Looking ahead
If
Looking ahead
Dx → 0
Anisotropic diffusion
=
# cells coming from neighbours
# cells in the node at time t # cells in the node at preceding time
+
# cells going to neighbours_
DyDx(i,j+1)
(i,j-1)
(i-1,j) (i+1,j)(i,j)
Original at ocw.mit.edu/ans7870/1/1.061/f04/animation/ANISO.AVI
Anisotropic diffusion
=
# cells coming from neighbours
# cells in the node at time t # cells in the node at preceding time
+
# cells going to neighbours_
DyDx(i,j+1)
(i,j-1)
(i-1,j) (i+1,j)(i,j)
Original at ocw.mit.edu/ans7870/1/1.061/f04/animation/ANISO.AVI
Anisotropic diffusion
=
# cells coming from neighbours
# cells in the node at time t # cells in the node at preceding time
+
# cells going to neighbours_
DyDx(i,j+1)
(i,j-1)
(i-1,j) (i+1,j)(i,j)
Original at ocw.mit.edu/ans7870/1/1.061/f04/animation/ANISO.AVI
Reaction-diffusion equation
=
# cells coming from neighbours
# cells in the node at time t # cells in the node at preceding time
+
# cells going to neighbours_
# generated (born) in the node+
# degradated (dead) in the node _
u changesin time
because diffuses
because of birth/death
# cells in the node at time t
# advected with velocity v _because it is
advected
=
# cells coming from neighbours
# cells in the node at preceding time
+
# cells going to neighbours_
# generated (born) in the node+
# degradated (dead) in the node _Original at
ocw.mit.edu/ans7870/1/1.061/f04/animation/ch6_cont.avi
Advection-reaction-diffusion equation
Breast tumour
Original at: www.maths.dundee.ac.uk/mbg/
Diffusion models
K. Swanson
K. Swanson
Lobectomy
Detectable border
Not visible on imaging
Sagittal, coronal and axial virtual MRIs from a continuous motion picture of the recurrence of a “favorable” glioblastoma (unusually small, 1 cm in diameter, and unusually far forward in frontal polar cortex) following extensive resection of most of the frontal lobe. Thick black contours represent the edge of the gadolinium-enhanced T1-weighted MRI (T1Gd) signal. Red: high glioma cell density; Blue: low density.
Loboctomy
Not visible on imaging
Detectable border
Sagittal, coronal and axial virtual MRIs from a continuous motion picture of the recurrence of a “favorable” glioblastoma (unusually small, 1 cm in diameter, and unusually far forward in frontal polar cortex) following extensive resection of most of the frontal lobe. Thick black contours represent the edge of the gadolinium-enhanced T1-weighted MRI (T1Gd) signal. Red: high glioma cell density; Blue: low density.
Growth of a glioblastoma
6-drug cocktail : 6-thioguanine, procarbazine, dibromodulcitol,
CCNN, 5-fluorouracil, hydroxyurea
Cycle of chemioterapy: Sagittal section (with legenda)
Horizontal section (without legenda)
Chemotherapy against glioblastoma
Convection-enhanced delivery
• ~ 10 6 cells• Maximum diameter ~ 2 mm• Necrotic core• Quiescent region• Periferic proliferation• “Nutrient” diffusion limit
Spheroid from V-79 Chinese hamster lung cells Folkman & Hochberg, Exp Med. 138:745-753 (73)
Multicellular spheroids
nutrientconcentration
r
proliferation threshold
proliferating rim
border valuenutrient diffuses in the tumour through its border and is consumed inside
Only tumour cells in 1D
proliferating rim
For R >> -1/2
Only tumour cells in 1D
nutrientconcentration
r
proliferation threshold
border valuenutrient diffuses in the tumour through its border and is consumed inside
proliferating rim
For R >> -1/2
Only tumour cells in 1D
nutrientconcentration
r
proliferation threshold
border valuenutrient diffuses in the tumour through its border and is consumed inside
proliferation threshold
necrosis threshold
necrotic corequiescent region proliferating rim
then added • growth promoting factors • growth inhibitory factors• ...
= (u,x)
nutrient diffuses in the tumour through its border and is consumed inside
r
border value
Only tumour cells in 1D
• 1-D Tumour (Cartesian)
• Cylindrical Tumour
R
• Tumour cord and Krogh cylinder
Exercises
= 0
Degenerate diffusion
Linear Diffusionwith ill-posed region
Degenerate diffusion equation
with aggregation
If