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Page 1: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

What I Wish I’d Known When I Was aBioinformatics Major

Steven W. Nevers, Shane Dooley, Matthew Bailey, David Patty,and John Kauwe, Ph.D.

Bioinformatics Research GroupBrigham Young University

September 25, 2012

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 2: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures
Page 3: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Bioinformatics

Bioinformatics

the application of statistics and computer science to the field ofmolecular biology

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 4: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

What does this mean for you?

it is the thread that willweave through all fields ofbiology and medicine in thenext half century

bioinformatics can lead youto a wide variety ofacademic and career choices

Where do you want to go?

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 5: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Bioinformatics Major

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What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 6: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Learning Objectives

Biology and Programming

Demonstrate a fundamental knowledge of biology and computerprogramming skills.

Research and Inquiry

Acquire the inquiry skills and tools necessary to answerbioinformatics research questions.

Research Collaboration

Collaborate in bioinformatics research at the university.

Professional Preparation

Bioinformatics skills and knowledge will help secure employment oradvancement toward higher education.

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 7: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Bioinformatics Major

interdisciplinary programoffering substantial trainingin both biological and thephysical and mathematicalsciences

program emphasizes theintegration of computerscience with genetics andmolecular biology

consists of taking classesfrom a variety of disciplines:biology, computer science,chemistry, statistics, etc.

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 8: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Requirements

University Core Requirements(general education and religion courses)

Baccalaureate Degree Requirements(gpa and minimum credit hours)

Major Requirements(bioinformatics major)

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 9: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Program Director

John Kauwe is the ProgramDirector for theBioinformatics major

He is the reigning authorityon major requirements, classsubstitutions, and theperson who certifies thatyou can graduate

John Kauwe, Ph.D.

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 10: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Life Science Student Services

the academic advising for allCollege of Life Sciencestudents

you have to go throughthem to switch majors(which you would never do),figure out 4 year plans, etc.

lets be honest, they don’tknow anything aboutbioinformatics (seriously).They probably think Perl is“a hard object producedwithin the soft tissue of aliving shelled mollusk.”

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 11: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Run perl script...

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 12: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

How to Be Successful

Complete your computer science core classes earlyCS 142: Introduction to Computer ProgrammingCS 235: Data Structures and AlgorithmsCS 240: Advanced Programming ConceptsCS 360: Internet ProgrammingThen decide your direction from there. If you want to go toprofessional school focus more on molecular biology. If youwant to do more of a pure bioinformatics career focus onstatistics and computer science

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 13: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Take calculus first and take bayesian statistics soon after

Hate biology and need help with biology core? Check out LifeSciences Learning Center (113 HRCB)

Get into a lab!! If you can’t manage to get paid initially,volunteer first and tried to get paid for subsequent semesters

Complete a summer internship!Regardless of your experience there are 100s of internships tofit any experience level. If you can do an internship everysummer.

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 14: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Let your imagination run wild!

if you are interested in Cotton work, there is someone oncampus that does cotton. if you are interested in insects findsomeone who publishes papers on insects.

Find your passion and odds are good that there is a professoron campus that shares the same one.

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 15: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

Have fun!

Develop a bioinformatics friend. Two heads are much betterthan one.

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group

Page 16: What I Wish I'd Known When I Was a Bioinformatics Majorbioinformatics.byu.edu/Portals/54/docs/bioinformatics.pdf · Bioinformatics skills and knowledge will help secure ... Data Structures

What is Bioinformatics? Bioinformatics Major Resources How to Be Successful Contact

John Kauwe:675 WIDB [email protected]

Steven [email protected]

Life Science Student Services: 380 WIDB

Life Science Learning Center:113 HRCBhttp://tinyurl.com/lifesciencelearning

What I Wish I’d Known When I Was a Bioinformatics Major Bioinformatics Research Group