table 1. comparison of laboratory investigations using the conventional approach and the las (clin...

Table 1. Comparison of laboratory investigations using the conventional approach and the LAS (Clin Chem 45:8 1168-1175 (1999)

Conventional LAS

ResultsMean number of tests ordered 32.7 17.8

t-Test for two related samples t = 5.4, P <0.01

Mean number of samples collected 7.5 5.8


ObservationsMean costs, $ $232 $194


Turnaround time (mean no. of days) 3.2 1

Diagnostic accuracy 66% 100%

Number of referrals 12 0

Established guidelines: thyroid testing

Mean number of tests ordered 1.7 1.7

Total number of sample collections 12 8

No established guidelines: hepatitis and autoimmune testing

Mean number of tests ordered 6.7 3.3


Results returned negative

Mean number of tests ordered 4.8 2


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Variables UsedTFT application

• Qualitative– Gender

– Clinical details

– Drug therapy

• Quantitative– Age

– Total T4

– TSH

– Free T4

– Free T3

Adult decision rangesTSH (mu/L)

• Decision Range– >=60

– >=20; <60

– >=10; <20

– >5; <10

– >4; <=5

– >=0.4; <4

– >=0.25; <0.4

– <0.25

• Description– Markedly high

– Very High

– High

– Mildly raised

– Near URL

– Normal

– Near LRL

– Below detection limit

Clinical and Drug detailsTFT

• CLINICAL DETAILS– A. Suspected

hyperthyroidism– B. Suspected

hypothyroidism– C.Post Radioiodine therapy

– D. Post thyroid surgery– E. On thyroxine treatment– F. On T3 treatment– G. On Carbimazole

– H. On PTU– Z. Non-specific

• DRUG THERAPY– A. Lithium

– B. Oestrogens

– C. Amiodarone

– D. Beta-blockers

– E. Glucocorticoids

– F. Phenytoin

– G. Carbamazepine

– H. Androgens

– Z. No relevant drugs

Variables UsedProtein electrophoresis

• Quantitative– patients age– serum total protein, albumin, -globulin, paraprotein concentrations

• Semi-quantitative– Visual assessment of albumin, 1,,2,, 1,,,,2,, and concentrations

• Qualitative– patients gender

– Visual inspection of zones and interzones (11 variables), e.g. 1

zone, - interzone findings

Primer knowledge basesTFT application

Name Cases Case TypesN1 44 Euthyroid

N6 44 Euthyroid (post RAI)

N15 143 Suppressed TSH(thyrotoxicosis)

N16 143 High TSH(Hypothyroid)

Etc…TOTAL 1142

Primer knowledge basesprotein electrophoresis

Name Cases Case TypesS1 6 Normal patterns

S2 18 Chronic inflammationpatterns

S3 32 Beat-gamma fusion

S4 34 Altered alb/globulin fractions

Etc…TOTAL 206

Performance evaluation - TFTPercentage of automatically assigned interpretations (AAI) per TFT batch

60

70

80

90

100

Consecutive TFT batches

Perc

enta

ge A

AI*

per

batc

h

TFT application statistics

• Number of variables specified: 8

• Number of options/decision levels: 70

• Number of theoretical data combinations: 20,412,000

• Number of cases entered via primer knowledge bases: 1142

• Number of rules: >2900

• Percentage of automatically assigned interpretations [using the primer knowledge bases]– At the outset: 66%

– After the first 500 patient cases: 70%

– Maximum achieved: 95%

• Number of interpretations rejected: <1%

electrophoresis application statistics

• Number of variables specified: 23 (22 used in rule generation)

• Number of options/decision levels: 183

• Number of theoretical data combinations: 8,800,000,000,000,000,000

• Number of cases entered via primer knowledge bases: 206

• Number of rules: 350

• Percentage of automatically assigned interpretations [using the primer knowledge bases]– At the outset: 78%

– After the first 500 patient cases: 72%

– Maximum achieved: 70-80%

• Number of interpretations rejected: 0

Clinical evaluationTFT application

(27 TFT requests on 15 randomly-selected new referrals to a thyroid clinic were studied; 2 evaluators participated)

Evaluator 1(physician)

Evaluator 2(biochemist)

Do you agree with thethyrometabolic classification in thereport? Complete agreement Partial agreement Complete disagreement

96%4%0%

85%11%4%

Was the interpretation clear in styleand presentation?

81% 96%

Were any references in theinterpretation to the followingitems appropriate? Specific thyroid diagnoses [5] Interfering conditions/drugs [4] Further tests on the sample [1] Followup recommendations [16] Treatment recommendations [2]

Actual no. of‘No’ answers

04000

Actual no. of‘No’ answers

10110

Clinical evaluationElectrophoresis application

(115 questionnaires circulated, 64 returned, 56% response)

Question Answer - YES Answer - NO

1. Did you require aninterpretation? 79% 21%

2. Was the interpretation helpful?95% 5%

3. Did the interpretation confirm anexisting or suspected diagnosis? 24% 76%

4. Did the interpretation lead to anew diagnosis not previouslysuspected?

0% 100%

5. Did you perform furtherinvestigations on the basis of theinterpretation?

14% 86%

Performance evaluationElectrophoresis application

0

20

40

60

80%

AA

I pe

r ba

tch

of 1

00

case

s

100 200 300 400 500

Total Number of reports entered

Without primerWith primer

Performance evaluationElectrophoresis application

(to demonstrate knowledge acquisition)

0

20

40

60

80%

AA

I pe

r ba

tch

of 1

00

case

s

100 200 300 400 500

Total Number of reports entered

All reportslabelled reports

Cooperativity

DATA

KBS

Diagnostic outcomeInterpretation

Cooperativity

KBS-1Comment

Diagnostic outcome (1) KBS-i

IntegratingComment

KBS-2Comment

Diagnostic outcome (2)

KBS-4Comment


KBS-3Comment


CooperativityOrgan-related profiles

• Renal profile – Na, K, Urea, Creatinine

• Bone profile– Ca, Alb, Corr Ca, Phosphate, AlkPhos

• Liver profile– Bili, Alb, T Protein, AST, Alk Phos, GGT

• Cardiac profile

• Lipid profile

CooperativityDecision Levels

120 mmol/L

110 mmol/L

140 mmol/L

130 mmol/L

160 mmol/L

150 mmol/LPlasmaSodium Concentration

Rule Elements

R Tr

L Tl

B Tb

C Tc

i Clin TiSexAge

Diagnostic outcomes CommentsRules and rule elements

Integrating rule and its elements

CooperativityPrimer knowledge bases

Universe KBS (Primers are subsets)

PRIMER

RenalKBS

PRIMER

BoneKBS

PRIMER

LiverKBS

PRIMER

Cardiac/LipidKBS

Selected Diagnostic Outcomes

• Renal profile– prerenal impairment

– Renal impairment

– hyponatraemia

– hypokalaemia

– hypernatraemia

– hyperkalaemia

– etc

• Bone profile– osteomalacia pattern

– renal osteomalacia

– primary hyperparathyroidism

– etc

Profile interpretations

• Renal– Na 133 [Low]

– K 5.8 [Raised]

– Urea 30.5 [raised]

– Creatinine 400 [Raised]

• Interpretation– Renal impairment with

hyperkalaemia and mild hyponatraemia

• Diagnostic outcome– renal impairment

• Bone– Ca 1.94 Corr Ca 2.04 [Low]

– Alb 35 [Normal]

– Phosphate 1.88 [High]

– Alk Phos 450 [High]

• Interpretation– Hypocalcaemia, raised

phosphate and Alk Phos: osteomalacia pattern

• Diagnostic outcome– osteomalacia pattern

Cooperative KBS output

• Renal KBS comment– Renal impairment with hyperkalaemia and mild hyponatraemia.

[DO= renal impairment]

• Bone KBS comment– hypocalcaemia, raised phosphate and Alk Phos. DO =

osteomalacia pattern.

• Integrating KBS comment– These results are consistent with renal failure and associated renal

osteodystrophy

Decision Support SystemsSupport for Health Care Professionals

Alarm/Alert SystemsAlertA significant but mild trend in a variable, or theachievement of a specified level by the variable.

Univariate Alerts: based on a single variableMultivariate Alerts: based on multiple variables

AlarmA marked trend in single variable, or the achievementof a critical specified level by the variable, and/or thepresence of several (multiple) alerts or multivariatealerts.

Univariate Alarms: based on a single variableMultivariate Alarms: based on multiplesvariables

Alarm/Alert Systems

Methods

Alarms/alerts based on Critical Values

Alerts/alarms based on Critical Trends Mathematical/Statistical methods Biodynamic Models KBS/Temporal reasoning systems

Knowledge-based (intelligent) alerts/alarms Cooperative systems

Alarm/Alert Systems

Univariate AlertsBased onSignificantValues

If Sodium_Concentration <125 mmol/lThenSet Alert [Sodium_Concentration] ON;End;

Based onSignificantTrends

If Potassium_Trend >0.1 mmol/l/hrThenSet Alert [K_Trend] ONEnd;

Alarm/Alert SystemsMultivariate Alerts

Based onSignificantValues

If Sodium<125and Water_Balance > 1000mland Urea NOT RAISEDThen Set Alert [Dilution_Hyponatraemia] ONEnd;

Based onSignificantTrends

If Potassium_Trend >0.1 mmol/l/hrand K_Infusion > 5 mmol/hrand Potassium_Concentration>4.5 mmol/lThen

Set Alert [Hyperkalaemia_ trend] ONEnd;

Knowledge-based alerts

If Sodium<125 mmol/land Urine Osmolality > 350 mosm/kgand cvp NORMALand Urea NOT RAISEDand Euthyroid/EuAdrenaland CARBAMAZEPINE TherapyThen Set Alerts [SIADH]; [CBZ effect] ONEnd;

Alarm/Alert SystemsCalibration

Alarms, when triggered, should lead to an immediate change inpatient care.

Alarms which do not lead to a change in patient care (false alarms)should be suppressed on subsequent occasions, or converted to analert status.

Suppression could also be achieved by knowledge-based revision ofthe Trigger Thresholds.

Repeated alarms may be ignored.

Alarms need to be responsive to the clinical context

Alarms should draw attention to new or strange findings.

Alarm/Alert Systems

Univariate AlarmsBased on SignificantValues

If Sodium_Concentration <120 mmol/l ThenSet Alarm [Hyponatraemia] ON;

End;

Based on SignificantTrends

If Potassium_Trend >0.5 mmol/l/hr ThenSet Alarm [K_Trend] ON

End;

Alarm/Alert SystemsMultivariate Alarms

Based on SignificantValues

If Sodium<120and Water_Balance > 1000mland Urea NOT RAISEDThen Set Alarm [Dilution_Hyponatraemia] ONEnd;

Based on SignificantTrends

If Potassium_Trend >0.5 mmol/l/hrand K_Infusion > 5 mmol/hrand Potassium_Concentration>5.0 mmol/lThen

Set Alarm [Hyperkalaemia_ trend] ONEnd;

Knowledge-basedalarms

If Sodium<115and Alert [SIADH] ONand Alert [Sodium_Trend] POSITIVEand Alert [Hyponatraemia] ONThen Suppress Alarm [Hyponatraemia]End;

Alarm/Alert SystemsVariables specified in the Alarms/Alerts System.

Test* Type** Categories***

Renal Sub-system:Sodium (mmol/l) QN 20Potassium (mmol/l) QN 20Urea (mmol/l) QN 20Creatinine (mol/l) QN 20Bicarbonate (mmol/l) QN 20Chloride (mmol/l) QN 5Glucose (mmol/l) QN 8

Acid-Base Sub-system:Arterial blood pH QN 5Arterial blood pCO2 QN 5Arterial blood pO2 QN 9

Haemodynamic Sub-system:Central venous pressure (mmHg) QN 4Cardiac failure index QL 2Oedema index QL 2Temperature index QL 3Pulse rate QN 5Blood pressure index QL 3Weight change QN 5Urine Output QN 6Sodium balance (mmol/day) QN 6Sodium output (mmol/day) QN 5Potassium balance (mmol/day) QN 4Potassium output (mmol/day) QN 4Nitrogen balance (g/day) QN 6Nitrogen output (g/day) QN 5Water balance (litres/day) QN 6

Footnote: *All laboratory tests are plasma concentrations or activities unless stated otherwise. **Each test is classified asquantitative (QN) or qualitative (QL). ***The number of decision levels specified is given for quantitative variables and thenumber of options specified for qualitative variables.

Alarm/Alert SystemsVariables specified in the Alarms/Alerts System.

Test* Type** Categories***

Critical Care Chemistry Sub-system:Bilirubin (mol/l) QN 15Blood prothrombin time QN 5Albumin (g/l) QN 14Total protein (g/l) QN 13Aspartate aminotransferase (u/l) QN 15Amylase (u/l) QN 5Calcium (mmol/l) QN 20Phosphate (mmol/l) QN 19Creatine kinase (u/l) QN 15Alkaline phosphatase (u/l) QN 17Alanine aminotransferase (u/l) QN 15Gamma-glutamyl transferase (u/l) QN 15Urate (mmol/l) QN 4Triglyceride (mmol/l) QN 18Blood haemoglobin concentration QN 8Blood white cell count QN 7Magnesium (mmol/l) QN 6

Variables considered at the Integrating System level:Renal Diagnostic Outcome QL Coded entries 000-099Acid-Base Diagnostic Outcome QL Coded entries 000-099Haemodynamic Diagnostic Outcome QL Coded entries 000-099Critical Care Chemistry Diagnostic Outcome QL Coded entries 000-099

Variables available to all participating systems:Age QN Adult, ChildSex QL M, FClinical information QL Coded entries A-Z

Footnote: *All laboratory tests are plasma concentrations or activities unless stated otherwise. **Each test is classified asquantitative (QN) or qualitative (QL). ***The number of decision levels specified is given for quantitative variables and thenumber of options specified for qualitative variables.

Alarm/Alert SystemsExample of output of the alarms/alerts System.

60 year old male with pyrexia (39Celsius)

PlasmaSodium 152 mmol/l[135-145]Potassium 3.9 mmol/l[3.5-5.0]Urea 4.5 mmol/l[3.0-7.0]Creatinine 98 mol/l [60-100]

Diagnostic OutcomesRenal DSS: Univariate Alert: Moderate hypernatraemia.Acid-Base DSS: No Results.Haemodynamic DSS: Univariate Alert: Pyrexia

Critical Care Chemistry DSS: No Results.

Integrating InterpretationIntegrating KBS: Multivariate Alert: Dehydration in a pyrexial

patient.


• Microbiology Applications– Computerised infectious disease monitor (Evans, 1986). Computer-

generated alarms were produced for (1) all patients with hospital-acquired infections; (2) patients on antibiotics to which they were not susceptible; (3) who could be receiving less expensive antibiotics; (4) who were receiving prophylactic antibiotcis for too long. Use of the system saved time for hospital infection control staff, and improved antibiotic use.

– MRSA monitor (Safran, Scherrer 1994). Infection control nurses were provided daily with computer-generated lab alerts giving details of MRSA+ together with re-admission alerts giving details of new admissions previously known to be colonised with MRSA. System saved time for ICNs and helped as a preventive warning.


• Histopathology/Cytopathology applications– PAPNET Cervical Screening Neural Network– Telepathology


• Haematology applications– Diamond and Nguyen/Coulter Electronics.

Various DSS applications for use with Coulter systems, flow cytometry, classification of haematological malignancies etc.

EQA Applications

• EQA Toolkit

table 1. comparison of laboratory investigations using the conventional approach and the las (clin...

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number of interpretations

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interpretations aai

patient cases

thyroid clinic

thyroid surgerye