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JEC/BT/UG/II-Yr/III-Sem/B-2017-2021/R-2017/QB/BOC Page 1 of 37
JEPPIAAR ENGINEERING COLLEGE
JEPPIAAR NAGAR, CHENNAI – 119
DEPARTMENT OF BIOTECHNOLOGY
BT 8304 – BIOORGANIC CHEMISTRY
II YEAR & III SEMESTER
BATCH : (2017-2021)
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VISION OF THE INSTITUTION
To build jeppiaar engineering college as an institution of academic excellence in technological and management education to become a world class university.
MISSION OF THE INSTITUTION
M1 To excel in teaching and learning, research and innovation by promoting the principles of scientific analysis and creative thinking.
M2 To participate in the production, development and dissemination of knowledge and interact with national and international communities.
M3 To equip students with values, ethics and life skills needed to enrich their lives and enable them to meaningfully contribute to the progress of society.
M4 To prepare students for higher studies and lifelong learning, enrich them with the practical and entrepreneurial skills necessary to excel as future professionals and contribute to Nation’s economy
PROGRAM OUTCOMES (POS)
PO 1 Engineering knowledge: Apply the knowledge of mathematics, science, engineering fundamentals, and an engineering specialization to the solution of complex engineering problems.
PO 2 Problem analysis: Identify, formulate, review research literature, and analyze complex engineering problems reaching substantiated conclusions using first principles of mathematics, natural sciences, and engineering sciences.
PO 3 Design/development of solutions: Design solutions for complex engineering problems and design system components or processes that meet the specified needs with appropriate consideration for the public health and safety, and the cultural, societal, and environmental considerations.
PO 4 Conduct investigations of complex problems: Use research-based knowledge and research methods including design of experiments, analysis and interpretation of data, and synthesis of the information to provide valid conclusions.
PO 5 Modern tool usage: Create, select, and apply appropriate techniques, resources, and modern engineering and IT tools including prediction and modeling to complex engineering activities with an understanding of the limitations.
PO 6 The engineer and society: Apply reasoning informed by the contextual knowledge to assess societal, health, safety, legal and cultural issues and the consequent responsibilities relevant to the professional engineering practice.
PO 7 Environment and sustainability: Understand the impact of the professional engineering solutions in societal and environmental contexts, and demonstrate the knowledge of, and need for sustainable development.
PO 8 Ethics: Apply ethical principles and commit to professional ethics and responsibilities and norms of the engineering practice.
PO 9 Individual and team work: Function effectively as an individual, and as a member or leader in diverse teams, and in multidisciplinary settings.
PO 10 Communication: Communicate effectively on complex engineering activities with the engineering community and with society at large, such as, being able to comprehend and write effective reports and design documentation, make effective presentations, and give and receive clear instructions.
PO 11 Project management and finance: Demonstrate knowledge and understanding of the engineering and management principles and apply these to one’s own work, as a member and leader in a team, to manage projects and in multidisciplinary environments.
PO 12 Life-long learning: Recognize the need for, and have the preparation and ability to engage in independent and life- long learning in the broadest context of technological change.
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VISION OF THE DEPARTMENT
To pursue excellence in producing bioengineers coupled with research attributes.
MISSION OF THE DEPARTMENT
M1 To impart quality education and transform technical knowledge into career opportunities.
M2 To establish a bridge between the program and society by fostering technical education.
M3 To generate societal conscious technocrats towards community development
M4 To facilitate higher studies and research in order to have an effective career / entrepreneurship.
PROGRAM EDUCATIONAL OBJECTIVES (PEOS)
PEO - 1 To impart knowledge and produce competent graduates in the field of biotechnology
PEO - 2 To inculcate professional attributes and ability to integrate engineering issues to broader social contexts.
PEO - 3 To connect the program and community by fostering technical education.
PEO - 4 To provide a wide technical exposure to work in an interdisciplinary environment
PEO - 5 To prepare the students to have a professional career and motivation towards higher education.
PROGRAM SPECIFIC OUTCOMES (PSOS)
Professional Skills: This programme will provide students with a solid foundation in the field of Biological Sciences and Chemical engineering enabling them to work on engineering platforms and applications in Biotechnology as per the requirement of Industries, and facilitating the students to pursue higher studies
PSO 2 Problem-solving skills: This programme will assist the students to acquire fundamental and problem solving knowledge on subjects relevant to Biotechnology thereby encouraging them to understand emerging and advanced concepts in modern biology
PSO 3 Successful Career and Entrepreneurship: Graduates of the program will have a strong successful career and entrepreneurial ability with the blend of inputs from basic science, engineering and technology, thereby enabling them to translate the technology and tools in various industries and/or institutes
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BT6302 BIOORGANIC CHEMISTRY L T P C 3 0 0 3
To enable the students
1. To know in detail about the elements of atom, charges and their bonding rule. 2. To understand the various kinetic properties and types of reaction mechanisms 3. To understand the possible bio-organic reactions involved in biosynthesis
UNIT I BONDING AND STEREOCHEMISTRY 9
Atoms Electrons and orbitals - Covalent Bonds - Octet rule - Polar covalant Bonds -
Electronegativity- formal charge - Resonance Acids and Bases - Arrhenius and Bronsted
Lowry Theories - Acid Base equilbria - SP3 hybridization - Conformations analysis ethane,
butane and cyclohexane - Cis- trans isomerism. Stereochem activity around the tetrahedral
carbon – optical activity - Conformation of the peptide bond.
UNIT II MECHANISMS OF SUBSTITUTION AND ADDITION REACTIONS 9
SN1 and SN2 reactions on tetrahedral carbon- nucleophiles- mechanism steric effects –
nucleophilic addition on Acetals and ketals -Aldehyde and ketone groups – reactions of carbonyl group with amines- acid catalyzed ester hydrolysis – Saponification of an esterhydrolysis of amides.
Ester enolates - claisen .condensation – Michael condensation.
UNIT III KINETICS AND MECHANISM 9
Kinetic method – Rate law and mechanism – Transition states- Intermediates – Trapping of
intermediates – Microscopic reversibility – Kinetic and thermodynamic reversibility –
Isotopes for detecting intermediates. Primary and secondary isotopes – the Arrhenius
equation Eyring equation - ΔG, ΔS, ΔH, Thermodynamics of coupled reactions.
UNIT IV CATALYSIS 9
Reactivity – Coenzymes – Proton transfer – metal ions – Intra molecular reactions –
Covalent catalysis – Catalysis by organized aggregates and phases. Inclusion
UNIT V BIOORGANIC REACTIONS 9
Timing of Bond formation and fission – Acyl group transfer – C-C bond formation and
fission – Catalysis of proton transfer reactions – Transfer of hydride ion – Alkyl group.
Transfer – Terpene biosynthesis – Murrlfield state peptide synthesis – Sanger method for
peptide and DNA sequencing.
TOTAL : 45 PERIODS
On completion of this course, the students will learn the basics principles of chemical
Bonding, Stereochemistry of Bio-organic molecules and their kinetics, mechanisms of
reactions and catalysis.
1. Carey, Francis A.” Organic Chemistry”. 7th Edition, Tata MCGraw Hill, 2009. 2. Page, M.I. and Andrew Williams “Organic and Bio-organic Mechanisms”. Pearson,
1. Dugas, Hermann “ Bioorganic Chemistry : A Chemical Approach to Enzyme Action” 3rd
Edition, Springer, 2003.
CO NO COURSE OUTCOME
C203.1 To know in detail about the elements of atom, charges and their bonding rule.
C203.2 To understand the various kine