bivariate analysis
DESCRIPTION
Bivariate analysis. HGEN619 class 2005. Univariate ACE model. Expected Covariance Matrices. Bivariate Questions I. Univariate Analysis: What are the contributions of additive genetic, dominance/shared environmental and unique environmental factors to the variance? - PowerPoint PPT PresentationTRANSCRIPT
Bivariate analysis
HGEN619 class 2005
Univariate ACE model
T 2
AEA C
a ac e
T 1
1 111
E
e
1
C
c
1
1 or .5
1
Expected Covariance Matrices
a2+c 2+e 2 .5a 2+c 2
.5a 2+c 2 a 2+c 2+e 2 DZ =
a2+c 2+e 2 a2+c 2
a2+c 2 a 2+c 2+e 2 MZ = 2 x 2
2 x 2
Bivariate Questions I
Univariate Analysis: What are the contributions of additive genetic, dominance/shared environmental and unique environmental factors to the variance?
Bivariate Analysis: What are the contributions of genetic and environmental factors to the covariance between two traits?
Two Traits
E YE X
X Y
A X A YA C
E C
Bivariate Questions II
Two or more traits can be correlated because they share common genes or common environmental influences e.g. Are the same genetic/environmental factors
influencing the traits? With twin data on multiple traits it is possible to
partition the covariation into its genetic and environmental components
Goal: to understand what factors make sets of variables correlate or co-vary
Bivariate Twin Data
individual twin
within between
trait within
between
(within-twin within-trait
co)variance(cross-twin within-trait)
covariance(cross-twin within-trait) covariance
cross-twin cross-trait covariance
Bivariate Twin Covariance Matrix
X1 Y1 X2 Y2
X1
Y1
X2
Y2
VX1 CX1X2
CX2X1 VX2
VY1 CY1Y2
CY2Y1 VY2
CX1Y1
CX2Y2
CY1X1
CY2X2
CX1Y2
CX2Y1
CY1X2
CY2X1
Genetic Correlation
Y 2
A YA X A Y
a x a ya y
X 1
1 11
A X
a x
1
1 or .5 1 or .5
X 2Y 1
rg rg
Alternative Representations
A X A Y
a x a y
X 1
1 1
Y 1
rg
A S X A S Y
a sx a sy
X 1
1 1
Y 1
A C
1
a c a c
A 1 A 2
a11 a22
X 1
1 1
Y 1
a21
Cholesky Decomposition
A 1 A 2
a11 a22
X 1
1 1
Y 1
a21
A 1 A 2
a11 a22
X 2
1 1
Y 2
a21
1 or .5 1 or .5
More Variables
A 1 A 2
a11 a22
X 1
1 1
X 2
a21
A 3
a33
1
X 3
A 4
a44
1
X 4
a32 a43a31 a42
A 5
1
X 5
Bivariate AE Model
A 1 A 2
a11 a22
X 1
1 1
Y 1
a21
A 1 A 2
a11 a22
X 2
1 1
Y 2
a21
1 or .5 1 or .5
E 1 E 2
e11 e22
1 1
e21
E 1 E 2
e11 e22
1 1
e21
MZ Twin Covariance Matrix
X1 Y1 X2 Y2
X1
Y1
X2
Y2
a112
+e112
a222+a21
2+e22
2+e212
a21*a11+e21*e11
a222+a21
2
a112
a21*a11
DZ Twin Covariance Matrix
X1 Y1 X2 Y2
X1
Y1
X2
Y2
a112
+e112
a222+a21
2+e22
2+e212
a21*a11+e21*e11
.5a222+
.5a212
.5a112
.5a21*a11
Within-Twin Covariances [Mx]
A 1 A 2
a11 a22
X 1
1 1
Y 1
a21a11
a22
0
a21
A 1 A 2
X 1
Y 1
X Lower 2 2
a112
a222+a 21
2a21 *a 11
a11 *a 21=
A=X*X'
a11
a22
0
a21
a11
a220
a21
* A=
Within-Twin Covariances
a112
a222+a 21
2a21 *a 11
a11 *a 21 A=
e112
e222+e 21
2e21 *e 11
e11 *e 21 E=
a112+ e 11
2
a222+a 21
2 +e 222+e 21
2
a11 *a 21 + e 11 *e 21 P= A+ E =a21 *a 11 + e 21 *e 11
Cross-Twin Covariances
a112
a222+a 21
2a21 *a 11
a11 *a 21 A=MZ
.5a 112
.5a 222+.5a 21
2.5a 21 *a 11
.5a 11 *a 21.5@ A=DZ
Cross-Trait Covariances
Within-twin cross-trait covariances imply common etiological influences
Cross-twin cross-trait covariances imply familial common etiological influences
MZ/DZ ratio of cross-twin cross-trait covariances reflects whether common etiological influences are genetic or environmental
Univariate Expected Covariances
a2+c 2+e 2 .5a 2+c 2
.5a 2+c 2 a 2+c 2+e 2 DZ =
a2+c 2+e 2 a2+c 2
a2+c 2 a 2+c 2+e 2 MZ = 2 x 2
2 x 2
Univariate Expected Covariances II
DZ = A+ C+ E .5@ A+ C.5@ A+ C A+ C+ E
A+ C+ E A+ C A+ C A+ C+ E
MZ = 2 x 2
2 x 2
Bivariate Expected Covariances
DZ = A+ C+ E .5@ A+ C.5@ A+ C A+ C+ E
A+ C+ E A+ C A+ C A+ C+ E
MZ = 4 x 4
4 x 4
Practical Example I
Dataset: MCV-CVT Study 1983-1993 BMI, skinfolds (bic,tri,calf,sil,ssc) Longitudinal: 11 years N MZF: 107, DZF: 60
Practical Example II
Dataset: NL MRI Study 1990’s Working Memory, Gray & White Matter
N MZFY: 68, DZF: 21