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Visual Detection of Multiple Genetically Modified Organisms in a Capillary Array Ning Shao, a,c,d,† Jianwei Chen, a,c,d,† Jiaying Hu, b,† Rong Li, b Dabing Zhang, b Shujuan Guo, a,c,d Junhou Hui, e Peng Liu, e Litao Yang b,* and Shengce Tao a,c,d,* a Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China. b Collaborative Innovation center for biosafety of GMOs, National Center for the Molecular Characterization of Genetically Modified Organisms, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China. c State Key Laboratory of Oncogenes and Related Genes, Shanghai 200240, China. d School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China. e Department of Biomedical Engineering, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, School of Medicine, Tsinghua University, Beijing 100084, China. These authors contributed equally to this work. *To whom correspondence should be addressed to L.-T. Y. ([email protected]) and S.-C. T. ([email protected]). Electronic Supplementary Material (ESI) for Lab on a Chip. This journal is © The Royal Society of Chemistry 2017

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Page 1: Visual Detection of Multiple Genetically Modified … › suppdata › c6 › lc › c6lc01330a › c6lc01330a1.pdfCharacterization of Genetically Modified Organisms, School of Life

Visual Detection of Multiple Genetically Modified

Organisms in a Capillary Array

Ning Shao,a,c,d,† Jianwei Chen, a,c,d,† Jiaying Hu,b,† Rong Li,b Dabing Zhang,b Shujuan Guo,a,c,d Junhou

Hui,e Peng Liu,e Litao Yangb,* and Shengce Tao a,c,d,*

aShanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of

Education), Shanghai Jiao Tong University, Shanghai 200240, China.

bCollaborative Innovation center for biosafety of GMOs, National Center for the Molecular

Characterization of Genetically Modified Organisms, School of Life Sciences and Biotechnology,

Shanghai Jiao Tong University, Shanghai 200240, China.

cState Key Laboratory of Oncogenes and Related Genes, Shanghai 200240, China.

dSchool of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.

eDepartment of Biomedical Engineering, Collaborative Innovation Center for

Diagnosis and Treatment of Infectious Diseases, School of Medicine, Tsinghua

University, Beijing 100084, China.

† These authors contributed equally to this work.

*To whom correspondence should be addressed to L.-T. Y. ([email protected]) and S.-C. T.

([email protected]).

Electronic Supplementary Material (ESI) for Lab on a Chip.This journal is © The Royal Society of Chemistry 2017

Page 2: Visual Detection of Multiple Genetically Modified … › suppdata › c6 › lc › c6lc01330a › c6lc01330a1.pdfCharacterization of Genetically Modified Organisms, School of Life

Supplementary Figure 1. The hydrophobic coating of the capillary array is necessary for successful

sample loading and separation. The same solution was loaded on both capillary arrays with or

without the hydrophobic modification of the top surfaces following the same steps described in Fig.

2. Only the capillary array with the hydrophobic modification achieved successful isolation of the

solution into individual capillaries.

Page 3: Visual Detection of Multiple Genetically Modified … › suppdata › c6 › lc › c6lc01330a › c6lc01330a1.pdfCharacterization of Genetically Modified Organisms, School of Life

Supplementary Figure 2. CALM is also compatible to large scale screening in 96-well plate format.

Page 4: Visual Detection of Multiple Genetically Modified … › suppdata › c6 › lc › c6lc01330a › c6lc01330a1.pdfCharacterization of Genetically Modified Organisms, School of Life

Supplementary Figure 3. Successful amplification on CALM platform without cross-contamination.

(a) The layout of the capillary array. “P”, positives, capillaries with pre-fixed primers; “N”, negatives,

blank capillaries. (b) The fluorescent photograph of the capillary array after LAMP. The green

color showed the positive LAMP amplification. (c) Gel electrophoresis analysis of the LAMP

products directly recovered from each capillaries in (b).

Page 5: Visual Detection of Multiple Genetically Modified … › suppdata › c6 › lc › c6lc01330a › c6lc01330a1.pdfCharacterization of Genetically Modified Organisms, School of Life

Supplementary Figure 4. Sensitivity of the conventional LAMP for the eight targets. Series dilution

of 50, 25, 10, 5 and 0 copies of haploid genome per reaction were tested. The bright white

fluorescence represents positive reaction.