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Topoisomerase during DNA replication As the strands of parental DNA unwind, the DNA ahead of the replication fork is forced to be condensed 1] Topoisomerase I: Reversible breakage and rejoining of one strand in DNA 2] Topoisomerase II: Reversible breakage and rejoining of both strands in DNA

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Page 1: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Topoisomerase during DNA replication

As the strands of parental DNA unwind, the DNA ahead of the replication fork is forced to be condensed 1] Topoisomerase I: Reversible breakage and rejoining of one strand in DNA 2] Topoisomerase II: Reversible breakage and rejoining of both strands in DNA

Page 2: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

What are common & different proteins of DNA synthesis in leading & lagging strands?

Coordinated DNA synthesis

Page 3: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

DNA replication act in a coordinated manner to synthesize both leading and lagging strands of DNA simultaneously at the replication fork

Coordinated DNA synthesis

http://www.hhmi.org/biointeractive/dna-replication-advanced-detail

Page 4: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

The replication of DNA starts at sites called origin of replication which provides single-stranded DNA template for initiation of DNA synthesis

Origin of replication

Replication bubble

Page 5: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

DNA replication act in a coordinated manner to synthesize both leading and lagging strands of DNA simultaneously at the replication fork

Origin of replication

Page 6: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Replication origin is a unique binding sites for proteins required to initiate DNA replication: Initiator proteins

Origin of replication

Single-stranded DNA template

DnaA : Initiator proteins DnaB: Helicase

Page 7: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Replication origin is a unique binding sites for primosome required to initiate DNA replication: Helicase & Primase

Priming of replication

DnaA : Initiator proteins DnaB: Helicase DnaG: Primase

Page 8: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Priming of replication

Binding of Initiator proteins

Binding of Helicase

Binding of Primase

Page 9: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Initiation of replication

Replication origin is a unique binding sites for DNA polymerase assembly to initiate DNA replication: DNA polymerase holoenzyme

Page 10: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Why is DNA replication initiated at the origin?

Protein structure of Helicase: Single-stranded region is required

Page 11: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Why is DNA replication initiated at the origin?

Assembly of Initiator proteins: Right time & Right place

Page 12: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Replication of prokaryotic DNA

Single origin is sufficient to direct the replication of prokaryotic genome

Page 13: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Replication of eukaryotic DNA

Multiple origins are needed to direct the replication of eukaryotic genome

Page 14: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Experimental identification of origins of replication

Basic functional assay in molecular biology: Selective marker & Molecular cloning

Page 15: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Termination of replication

Circular DNA DOES NOT have free ends of DNA: Complete replication in the termination zone

Page 16: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Termination of replication

Linear DNA have free ends of DNA: Compromising in the replication & integrity of DNA

Page 17: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Telomere & Telomerase: Maintaining the end of DNA

Free ends of linear DNA is extended as tandem repeat by telomerase

https://www.youtube.com/watch?v=AJNoTmWsE0s

Page 18: Topoisomerase during DNA replication - KOCWcontents.kocw.net/KOCW/document/2015/korea_sejong/... · 2016-09-09 · Topoisomerase during DNA replication As the strands of parental

Telomere & Telomerase: Maintaining the end of DNA

Free ends of linear DNA is protected by shelterin complex: Enzymatic and structural functions

Enzymatic function

Structural function