the relative orientation observed for helices packed on ß sheets
DESCRIPTION
The relative orientation observed for helices packed on ß sheets. The Complementary twist model for the helix to ß sheet packing. 6. 7. 2. 3. 1. 5. 4. 3. 4. 1. 2. Beta sheet structure. Beta sheets have “topologies” that bring together distant portions of the sequence. - PowerPoint PPT PresentationTRANSCRIPT
The relative orientation observed for helices packed on ß sheets
The Complementary twist model for the helix to ß sheet packing
12
3
4
Beta sheet structure
Beta sheets have “topologies” that bring together distant portions of the sequence.
Front: 1-2-5Back: 7-6-3-4
2-1-4-3
1
34
25
67
Beta strands are numbered in sequence order.
The relative orientation of the packing ß sheet
Parallel beta sheetsConcanavalin
ß-pleated sheet sandwich proteins
A model for the aligned packing of the ß sheet
The ß sheet to ß sheet packing in prealbumin
Orthogonal Beta Sheet Protein
A model for the orthogonal packing of the ß sheet
B-propeller from flu virus
B-barrel Porin (Channel) Protein
What accounts for the high stability of HD-Crys?
Hydrophobic domain cores
Domain interface interactions
Hydrophobic domain interface residues
N-terminal domain C-terminal domain
Conservation among 35 -crystallin sequences:
N-terminal
Met43Phe56Ile81
C-terminal
Leu145Val132Val170
Met43 - Met 77% Val 11.5% Ala 8.5% Ile 3%
Phe56 - Phe 80% Val 8.5% Ile 8.5% Leu 3%
Ile81 - Ile 80% Val 8.5% Leu 5.5% Pro 3% Thr 3%
Val132 - Val 54.3% Ile 28.5% Leu 17.2%
Leu145 - Leu 68.5% Tyr 20% Phe 11.5%
Val170 - Val 49% Ile 42% Ala 3% Met 3% Leu 3%
Peripheral domain interface residues
N-terminal domain C-terminal domain
N-terminal
Gln54
Arg79
C-terminal
Gln143
Met147
Conservation among 35 -crystallin sequences:
Gln54 - Gln 88.5% Met 8.5% Pro 3%
Arg79 - Arg 83% Cys 8.5% Lys 5.5% His 3%
Gln143 - Gln 80% Met 17% Leu 3%
Met147 - Arg 85.5% Glu 8.5% Asp 3% Met 3%