synthesis, characterization and antibacterial …...impurity should be included. article received...
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IJIPBART (2015) Volume 2, Issue (4), pp: 279-288 ISSN: 2349-865X
OPEN ACCESS
International Journal of Innovation in Pharma
Biosciences and Research Technology (IJIPBART)
Original Research Article
www.refsynjournals.com 279
Synthesis, characterization and antibacterial activities of
Clindamycin impurities
Ilango Kalpana1*, Mr. Blanchard Vincent
1
1 DEPARTEMENT CHIMIE, IUT D’ORSAY, UNIVERSITE PARIS SUD, FRANCE.
ABSTRACT
INTRODUCTION
Drugs are natural or synthetic substances used in the diagnosis, mitigation, treatment,
or prevention of a disease by functioning inside the living body. A legal or medicinal drug can be
harmful and addictive if misused. Impurities are nonessential compounds that are not part of the drug
substance but arise during the synthesis, extraction, purification and storage of the drug substance.
Process impurities are organic, inorganic and residual solvents which arise during the manufacturing
process of the drug substance.
Organic impurities arise during the manufacturing process and storage of new drug
substances. Inorganic impurities resulting from the manufacturing process can include reagents,
ligands and catalysts, heavy metals or other residual metals, inorganic salts and other materials.
Degradants are chemical break down compounds of drug substances formed during storage or
physical degradation. Degradants are unexpected adulterating compounds found in the drug substance
or different crystalline forms of the same drug substance. Many organic substances may exhibit
optical isomerism leading to the formation of enantiomers. Isomers, other than the drug substance are
treated as impurities. A general acceptance criterion of not more than 0.1% for any unspecified
impurity should be included.
Article received
December 11, 2015
Article accepted
December 21, 2015
Article published
December 31, 2015
*Corresponding Author:
Ms. Kalpana,
Departement chimie,
Universite paris sud,
France
Clindamycin is an antibiotic useful to treat a number of bacterial
infections. In this present study, the clindamycin impurities, namely
Sulphoxide and sulphone were synthesized by using low cost and
simple chemical mCPBA. The synthesized impurities were purified
by column chromatography. The formation of compounds were
identified by using TLC and HPLC. The compounds were
characterized by their respective spectral data (MS and 1H-NMR).
The antibacterial activity of impurities was compared against
clindamycin. The synthesized compounds should be beneficial for the
pharmaceutical, toxicological, clinical studies and for the drug
discovery and development.
Key words: clindamycin, sulphone, Sulphoxide, mCPBA, impurities
Ilango Kalpana et al IJIPBART (2015) Volume 2, Issue (4), pp: 279-288
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Clindamycin is semi-synthetic and belongs to lincosamide class (Brodasky et al., 1968).
Clindamycin is a chlorine substituted derivative of lincomycin (trans-L-4-n-propyl hygrinic acid,
attached to a sulfur containing derivative of octose), synthesised by Streptomyces lincolnensis.
Clindamycin is active against B. fragilis, P. jiroveci, T. gondii, Clostridium, C. acnes and P. carinii.
So, it is used in the treatment of abdominal and pelvic abscess, respiratory tract infections including
lung abscess, skin and soft-tissue infections. Clindamycin is usually similar to erythromycin in its in
vitro activity against susceptible strains of Pneumococci, S. pyogenes, and S. viridans. Methicillin
susceptible S. aureus strains are susceptible to Clindamycin whereas methicillin resistant S. aureus
strains and coagulase negative Staphylococci are resistant to Clindamycin. Clindamycin is more active
against anaerobic bacteria, especially, B. fragilis, than erythromycin or clarithromycin. Other
Bacteroides species and anaerobes like B. melaninogenicus, Peptostreptococcus, Peptococcus and C.
perfringens are susceptible to Clindamycin. Actinomyces israelii, Nocardia asteroides and
Chlamydia species are sensitive to Clindamycin.
Clindamycin is used against protozoans such as Toxoplasma and Mycoplasma as well as
many anaerobic bacteria (Luft and Remington, 1988; Dannemann et al., 1991; Mazur et al., 1999). In
humans, absorption of clindamycin is rapid and virtually complete (90%) following oral
administration (DeHaan et al., 1972; Metzler et al., 1973). Concentration of Clindamycin in the serum
increases linearly with increased dose, and the levels exceed the minimum inhibitory concentration
for most indicated organisms for atleast 6 hours following administration of the recommended dose.
Clindamycin is widely distributed throughout the body and has an average biological half life of 2.4
hours. The major bioactive metabolites excreted in urine and faeces are Clindamycin sulfoxide and N-
desmethylclindamycin (Seaberg et al., 1984; Flaherty et al., 1988; Gatti et al., 1998). The synthesis of
Clindamycin sulphone and sulphoxide was done using sodium perborate and Hydrogen peroxide
(Devlin, 2006). Microbiological synthesis of Clindamycin sulphoxide has also been reported
(Arcoudellis et al., 1969).
Oxidation is the process of converting materials into useful chemicals of a higher oxidation
state (Hudlicky, 1990). Nitric acid, the most conventional industrial oxidant, (Buchner et al., 1986) is
cheap but forms various nitrogen oxides. Oxidation of organic sulfides is the most utilized method to
produce sulfoxides and sulfones (Patai et al., 1988; Patai and Rappoport, 1994; Page, 1995; Kagan,
1998). This method is also useful to study the oxygenation properties of oxidation systems (Ricoux,
2009; Franke, 2008). Stoichiometric oxidants like permanganate (Gokel et al., 1998), sodium bromate
(Shaabani et al., 2009), periodic acid (Xu et al., 2003), perbenzoic acid (Paybarah et al., 1982), meta-
chloroperbenzoic acid (Kubota and Takeuchi, 2004) and sulfonic peracids (Kluge et al., 1996) have
also been used. Oxidation reagents play a crucial role in the organic synthesis and the most important
among them is meta-choroperoxybenzoic acid (mCPBA). Advantages of 3-chloroperbenzoic acid is
its handling, because it is present as powder, which can be kept in the refrigerator. mCPBA with an
outstanding reactivity is however, more selective than hydrogen peroxide and other peracids.
Ilango Kalpana et al IJIPBART (2015) Volume 2, Issue (4), pp: 279-288
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In the present study, mCBPA was used in simple environmental conditions to synthesize
Clindamycin Sulphoxide and Clindamycin sulphone. Thus, objective of the present study is the
synthesis and characterization of Clindamycin Sulphoxide and Clindamycin sulphone impurities by
using mCPBA.
METHODS
Clindamycin was gifted by Refsyn Biosciences Pvt. Ltd, Puducherry. All reagents and
solvents used were of commercial grade and were used as such, unless otherwise specified. Thin
Layer Chromatography (TLC) was performed on Kieselgel 60 F254 silica-coated aluminium plates
(Merck, India) and visualized using iodine. Organic extracts were dried over anhydrous Sodium
sulphate.
Synthesis of Clindamycin sulphoxide
1g of Clindamycin was dissolved in 4 ml of acetic acid and cooled to 0 °C mCPBA was added
and the reaction was continued by heating to 50 °C. The reaction was monitored by Thin layer
chromatogram and visualized under iodine chamber. Completion of the reaction was observed by the
disappearance of Clindamycin. The reaction mixture was neutralized to PH
10 using saturated sodium
carbonate. The compound was extracted with chloroform. Acetone was added to the aqueous layer.
The precipitated white solid was filtered and washed with diethyl ether and dried. The crude material
was purified by column chromatography using silica gel 60-120 mesh and Chloroform and methanol
mixture as mobile phase.
Synthesis of Clindamycin sulphone
250 mg of Clindamycin was dissolved in 10 ml of methanol. To this, 1.5 equivalents of
mCPBA were added and the reaction was continued at room temperature. The reaction was monitored
by Thin layer chromatogram and visualized under iodine chamber. Completion of the reaction was
observed by the disappearance of Clindamycin. The reaction mixture was neutralized to PH
8 using
saturated sodium carbonate. The compound was extracted with chloroform. The organic layer was
taken and dried with anhydrous sodium sulphate. The crude material was purified by column
chromatography using silica gel 60-120 mesh and Chloroform and methanol mixture was used as
mobile phase.
TLC analysis of crude Clindamycin sulphone and sulphoxide compounds
Clindamycin, Clindamycin sulphoxide and Clindamycin sulphone were analyzed by TLC to
determine the Rf values. 20% methanol in chloroform was used as mobile phase and visualized under
iodine chamber.
HPLC analysis of crude Clindamycin sulphone and sulphoxide compounds
Clindamycin, Clindamycin sulphoxide and Clindamycin sulphone were analyzed using an
isocratic HPLC system (Waters, USA) to determine the conversion of products. Buffer solution was
prepared by dissolving 6.8 g of monobasic potassium phosphate in 1 litre of water and adjusting the
Ilango Kalpana et al IJIPBART (2015) Volume 2, Issue (4), pp: 279-288
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PH to 7.5 with 8N Potassium hydroxide. The buffer was filtered through 0.45 µm filter. 55% buffer
solution was mixed with 45% acetonitrile, followed by ultrasonication for 15 min. Mobile phase was
filtered through 0.45 µm filter. The samples were dissolved in methanol and filtered through 0.45 µm
filter and used for HPLC analysis.
Characterization of the purified compounds
Molecular weights of the purified Clindamycin sulphoxide and Clindamycin sulphone
compounds were analyzed by Mass Spectrometry and structural identification was performed by H1
NMR spectroscopy. NMR (Nuclear Magnetic Resonance) spectra was recorded using a Spectrometer
(Varian 300 MHz Mercury plus) at 300 MHz. Chemical shifts were given in ppm relative to
trimethylsilane (TMS). Mass spectra were recorded on Shimadzu-LC-2010EV Liquid
Chromatography-Mass Spectrometry with APCI and ESI probes (Shimadzu, Japan).
Testing the antibacterial activity of the purified compounds
The antibacterial activity of the purified compounds was tested by well difusion method on
Muller Hinton agar plates (Himedia Laboratories, Mumbai, India). Test solution of concentration 93
mg/ml was used for the analysis. Overnight bacterial cultures of Staphylococcus aureus NCIM 2079,
Streptococcus mutans NCIM 2611, Bacillus subtilis NCIM 2920, Enterobacter faecalis NCIM 2015,
Escherichia coli NCIM 2065 and Klebsiella pneumoniae NCIM 2957 were used as inoculum for
testing the antibacterial activity. 50µl of Clindamycin sulfoxide and Clindamycin sulfone impurities
were added to the wells and incubated and the results were recorded by measuring the zone of
inhibition using calibrated reader scale.
RESULTS AND DISCUSSION
The synthesis reaction of Clindamycin sulphone and Sulphoxide were formed in 6 & 12 hours
respectively. The sulphone was extracted ethyl acetate and the Sulphoxide present in aqueous which is
precipitated with acetone (Figure 1).
TLC and HPLC are best methods for the identification of compounds. The reaction was
monitored by using TLC and was observed in the iodine chamber due to inactivation of clindamycin
in UV Light (Figure 2). The yield of white solid Sulphoxide and sulphone were 60% & 90%.
HPLC analysis is used for the identification of pharmaceutical products like metabolites and
impurities. Less volume of samples are sufficient for HPLC analysis. The conversion of products can
be easily detected by HPLC. HPLC analysis of Clindamycin, crude compounds of Clindamycin
sulphoxide and Clindamycin sulphone were done by isocratic method. Retention Time (RT) of
Clindamycin, Clindamycin sulphoxide and Clindamycin sulphone were 6, 4 and 3.5 respectively
(Figure 3). These results show the formation of products with some unknown impurities. The
conversion percentage of sulphoxide and sulphone were 61% and 92% respectively.
Ilango Kalpana et al
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Figure-1: Extraction (A), crude compound (B), column purification and product of Clindamycin
Figure 2: TLC analysis of pure Clindamycin sulphoxide and Clindamycin sulphone
Purification of Clindamycin, Clindamycin
Figure-3: HPLC analysis images of Clindamycin
sulphone (C)
Table-2: HPLC analysis result of Clindamycin
Sl. No. Name RT
1 Clindamycin 6.45
Sum
IJIPBART (2015) Volume 2, Issue (
Extraction (A), crude compound (B), column purification and product of Clindamycin
sulphoxide & Sulphone
Table-1: Rf values of compounds
TLC analysis of pure Clindamycin sulphoxide and Clindamycin sulphone
Purification of Clindamycin, Clindamycin Sulphoxide and Clindamycin Sulphone
HPLC analysis images of Clindamycin(A), crude Clindamycin Sulphoxide (B) &
HPLC analysis result of Clindamycin
RT [min] Area [mVxs] Height [mV] Amount %
6.45 2184.24 69.59 100
2184.24 69.59
Name of the compound Rf values
Clindamycin 0.94
Clindamycin sulphoxide 0.20
Clindamycin sulphone 0.86
IJIPBART (2015) Volume 2, Issue (4), pp: 279-288
283
Extraction (A), crude compound (B), column purification and product of Clindamycin
TLC analysis of pure Clindamycin sulphoxide and Clindamycin sulphone
Sulphoxide (B) &
Amount %
100
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Table-3: HPLC analysis result of crude Clindamycin sulphoxide
Sl. No. Name
1. Unknown 1
2. Clindamycin Sulfone
3. Clindamycin Sulfoxide
4. Unknown 2
Sum
Table-4: HPLC analysis result of crude Clindamycin sulphone
Sl. No. Name
1. Unknown
2. Clindamycin Sulfone
Sum
Characterization of compounds
Figure-4: Mass Spectrometry and H
and B) and Clindamycin sulphone (C and D)
IJIPBART (2015) Volume 2, Issue (
HPLC analysis result of crude Clindamycin sulphoxide
RT [min] Area [mVxs] Height [mV]
2.85 892.06 37.33
3.5 417.88 21.86
4.08 814.70 44.36
4.88 100.70 5.02
2225.34 108.57
HPLC analysis result of crude Clindamycin sulphone
RT [min] Area [mVxs] Height [mV]
2.83 1056.64 39.61
3.42 1174.36 113.20
2231.01 152.81
Mass Spectrometry and H1 NMR Spectroscopy analysis of Clindamycin sulphoxide (A
and B) and Clindamycin sulphone (C and D)
IJIPBART (2015) Volume 2, Issue (4), pp: 279-288
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Amount %
26
10
61
3
Amount %
8
92
NMR Spectroscopy analysis of Clindamycin sulphoxide (A
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The mass spectrometry and H
Clindamycin sulphoxide and Clindamycin sulphone. By using atmospheric pressur
ionization, MS spectra were produced consisting predominantly of the protonated [M+H]
precursor ions with a mass to charge ratio (m/z) of
charge ratio (m/z) of 456 implied Clindamycin su
and stereochemistry of the molecules of pharmaceutical interest can be
H1 NMR spectroscopy analysis was performed for the ide
Antibacterial activity of Clindamycin and its impurities
Figure-5: Antibacterial activity of Clindamycin (A) and its impurities (B & C) in different
Table-5: Zones of Inhibition for the bacterial cultures
Bacteria
Staphylococcus aureus
Streptococcus mutans
Enterobacter faecalis
Bacillus subtilis
Klebsiella pneumoniae
Escherichia coli
The bacteria used for the study showed a significant antibacterial effect against both the
impurities towards S. mutans, S. aureus
Similarly, for K. pneumonia, Clindamycin S
Clindamycin Sulphoxide. The impurities exhibited bacteriostatic activity against
minimum incubation period proportional to the concentration and as the incubation period increases
the bacteria dominated by increasing its population size with an indication that the drug impurity
possesses bacteriostatic effect thus not completely killing
IJIPBART (2015) Volume 2, Issue (
The mass spectrometry and H1 NMR spectroscopy results confirm the formation of
Clindamycin sulphoxide and Clindamycin sulphone. By using atmospheric pressur
ionization, MS spectra were produced consisting predominantly of the protonated [M+H]
a mass to charge ratio (m/z) of 440 implied Clindamyicn sulphoxide and a mass to
456 implied Clindamycin sulphone (Figure 4). The specific bonding structure
and stereochemistry of the molecules of pharmaceutical interest can be studied by NMR
analysis was performed for the identification of protons (Figure 4
activity of Clindamycin and its impurities
Antibacterial activity of Clindamycin (A) and its impurities (B & C) in different
bacterial cultures
Zones of Inhibition for the bacterial cultures
Clindamycin Clindamycin
Sulphone
Clindamycin
Sulphoxide
Staphylococcus aureus 40 mm 20 mm 24 mm
40 mm 28 mm 30 mm
40 mm 19 mm 18 mm
40 mm 30 mm 32 mm
Klebsiella pneumoniae 44 mm 27 mm 16 mm
22 mm No Zone No Zone
The bacteria used for the study showed a significant antibacterial effect against both the
S. aureus and B. subtilis with a inhibition zone as noted in Table 5.
Clindamycin Sulphone exhibited better bactericidal activity than
. The impurities exhibited bacteriostatic activity against E. coli
minimum incubation period proportional to the concentration and as the incubation period increases
inated by increasing its population size with an indication that the drug impurity
possesses bacteriostatic effect thus not completely killing E. coli.
IJIPBART (2015) Volume 2, Issue (4), pp: 279-288
285
the formation of
Clindamycin sulphoxide and Clindamycin sulphone. By using atmospheric pressure chemical
ionization, MS spectra were produced consisting predominantly of the protonated [M+H]+ ion. The
lindamyicn sulphoxide and a mass to
). The specific bonding structure
by NMR spectroscopy.
ntification of protons (Figure 4).
Antibacterial activity of Clindamycin (A) and its impurities (B & C) in different
Clindamycin
Sulphoxide
The bacteria used for the study showed a significant antibacterial effect against both the
with a inhibition zone as noted in Table 5.
exhibited better bactericidal activity than
E. coli in the
minimum incubation period proportional to the concentration and as the incubation period increases
inated by increasing its population size with an indication that the drug impurity
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CONCLUSION
Clindamycin sulphoxide and sulphone compounds were prepared by using mCPBA with
different equivalents and with different temperatures. The crude compounds were analysed by TLC
and by HPLC to determine the conversion rate of compounds. The compounds were purified by
column chromatography. The purified compounds were analysed by Mass Spectrometry and H1 NMR
spectroscopy. The antibacterial activities of Clindamycin sulphoxide and Clindamycin sulphone were
compared with that of Clindamycin. mCPBA is the very less expensive and a strong oxidising agent
used for the sulfoxidation of macrolide Clindamycin. The synthesized compounds were also having
higher antibacterial activity compared to Clindamycin. So the impurities can also be used in drug
discovery, drug developmental studies and also as reference standards for phamacological,
toxicological and clinical trial studies.
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Cite this article in press as Ilango Kalpana et al. (2015) Synthesis, characterization and
antibacterial activities of Clindamycin impurities, IJIPBART, 2(04); 279-288.
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