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154

7. References

Abdullah, N., Khan, A.D. and Ejaz, N. (2004). Influence of nutrients carbon and

nitrogen supplementation on biodegradation of wheat straw by Trametes

versicolor. Micologia Aplicada International 16: 7-12.

Adinarayana, K. and Ellaiah, P. (2002). Response surface optimization of the critical

medium components for the production of alkaline protease by a newly isolated

Bacillus sp. Journal of Pharmaceutical Science 5: 272–276.

Agbagla-Dohnani, A., Nozie`Re, P., Gaillard-Martinie, B., Puard, M. and Doreau, M.

(2003). Effect of silica content on rice straw ruminal degradation. Journal of

Agricultural Science 140: 183–192.

Agosin, E., Jarpa, S., Rojas, E. and Espejo, E. (1989). Solid-state fermentation of pine

sawdust by selected brown-rot fungi. Enzyme and Microbial Technology 11: 511–

517.

Agosin, E., Monties, B. and Odier, E. (1985). Structural changes in wheat straw

components during decay by lignin-degrading white-rot fungi in relation to

improvement of digestibility for ruminants. Journal of Science of Food and

Agriculture 36: 925-935.

Akhtar, M., Scott, G.M., Swaney, R.E. and Kirk, T.K. (1998). Overview of

biomechanical and biochemical pulping research. ACS Symposium Series,

American Chemical Society.

Akhter, S., Owen, E., Theodorou, M.K., Butler, E.A. and Minson, D.J. (1999). Bovine

faeces as a source of micro-organisms for the in-vitro digestibility assay of

forages. Grass and Forage Sciences 54: 219- 226.

Akin, D.E., Sethuraman, A., Morrison, W.H., Martin, S.A. and Eriksson, K.E.L. (1993).

Microbial delignification with white-rot fungi improves forage digestibility.

Applied and Environmental Microbiology 59: 4274–4282.

Al-Ani F. and Smith J.E. (1986). Effect of different nitrogen supplementations on

fermentation of bagasse by Sporotrichum pulverulentum wild type and mutants.

Transactions of the British Mycological Society 86: 165-168.

Alder, E. (1977). Lignin chemistry, past, present and future. Wood Science and

Technology 11: 169–218.


155

Alexandre, G. and Zhulin, I.B. (2000). Laccases are wide spread in bacteria. Trends in

Biotechnology 18: 41-42.

Ali, Q., Ahsan, M. and Waseem, M. (2011). World fodder and forage crops. Lambert

Academic Publishing ISBN 978-3-8443-8472-7.

Alves De Brito, C.G.F., Rodella, R.A. and Deschamps, F.C. (2003). Chemical profile of

cell wall and its implications on Brachiaria brizantha and Brachiaria humidicola

digestibility. Revista Brasileira de Zootecnia 32: 1835–1844.

Ander, P. and Eriksson, K.E. (1977). Selective degradation of wood components by

white-rot fungi. Physiologia Plantarum 41: 239-248.

Anderson, W.F. and Akin, D.E. (2008). Structural and chemical properties of grass

lignocelluloses related to conversion for biofuels. Journal of Industrial

Microbiology & Biotechnology 35: 355-366.

Antongiovanni M. and Sargentini C. (1991). Variability in chemical composition of

straws. Options Méditerranéennes-Séries Séminaires 16: 49–53.

Arantes, V., Milagres, A. M. F., Filley, T. R. and Goodell, B. (2010). Lignocellulosic

polysaccharides and lignin degradation by wood decay fungi: the relevance of

nonenzymatic Fenton-based reactions. Journal of Industrial Microbiology and


Arora, D.S. and Gill, P.K. (2000). Laccase production by some white rot fungi under

different nutritional conditions. Bioresource Technology 73: 283-285.

Arora, D.S. and Gill, P.K. (2001). Comparison of two assay procedures for lignin

peroxidase. Enzyme and Microbial Technology 28: 603-605.

Arora, D.S. and Gill, P.K. (2005). Production of ligninolytic enzymes by Phlebia

floridensis. World Journal of Microbiology and Biotechnology 21: 1021-1028.

Arora, D.S. and Sandhu, D.K. (1986). Degradation of lignocellulosic residues by

Polyporus versicolor and the effect of moisture content and phenolic compounds.

Acta Biotechnologica 6: 293-297.

Arora, D.S. and Sharma, R.K. (2009). Comparative ligninolytic potential of Phlebia

species and their role in improvement of in vitro digestibility of wheat straw.

Journal of Animal and Feed Sciences 18:151–161.

Arora, D.S. and Sharma, R.K. (2010). Ligninolytic fungal laccases and their

biotechnological applications. Applied Biochemistry and Biotechnology 160:

1760–1788.


156

Arora, D.S., Chander, M. and Gill, P.K. (2002). Involvement of lignin peroxidase,

manganese peroxidase and laccase in degradation and selective ligninolysis of

wheat straw. International Biodeterioration and Biodegradation 50: 115-120.

Arora, D.S., Sharma, R.K. and Chandra, P. (2011). Biodelignification of wheat straw

and its effect on in vitro digestibility and antioxidant properties. International

Biodeterioration & Biodegradation 65: 352-358.

Aust, S.D. (1990). Degradation of environmental pollutants by Phanerochaete

chrysosporium. Microbial Ecology 20: 197–204.

Bailey, M.J., Biely, P. and Poutanen, K. (1992). Laboratory testing of methods of assay

of xylanase activity. Journal of Biotechnology 23: 257-270.

Bailoni, L., Bonsembiante, M., Schiavon, S., Pagnin, G. and Tagliapietra, F. (2003).

Estimation of the content of pectins in feeds: fractional extraction and quantitative

determination. Veterinary Research Communications 27: 249-251.

Bak, J.S., Ko, J.K., Choi, I.G., Park, Y.C., Seo, J.H. and Kim, K.H. (2009). Fungal

pretreatment of lignocellulose by Phanerochaete chrysosporium to produce

ethanol from rice straw. Biotechnology and Bioengineering 104: 471–482.

Banerjee, S., Azad, S.A., Vikineswary, S., Selvaraj, O.S. and Mukherjee, T.K. (2000)

Phototropic bacteria as fish feed supplement. Asian Australisn Journal of Animal

Science 13: 991–994.

Barahona, R., Lascano, C.E., Narvaez, N., Owen, E., Morris, P. and Theodorou, M.K.

(2003). In vitro degradability of mature and immature leaves of tropical forage

legumes differing in condensed tannin and non-starch polysaccharide content and

composition. Journal of Science of Food and Agriculture 83:1256–1266.

Basu, S., Gaur, R., Gomes, J., Sreekrishnan, T.R. and Bisaria, V.S. (2002). Effect of

seed culture on solid state bioconversion of wheat straw by Phanerochaete

chrysosporium for animal feed. Journal of Bioscience and Bioengineering 93: 25-

30.

Beauchemin, K.A., Colombatto, D., Morgavi, D.P. and Yang, W.Z. (2003). Use of

exogenous fibrolytic enzymes to improve feed utilization by ruminants. Journal of

Animal Science 81: E37–E47.

Bellomo, G. (1991). Cell damage by oxygen free radicals. Cytotechnology 5: 71-73.


157

Bertrand, I. Chabbert, B. Kurek, B. and Recous, S. (2006). Can the biochemical features

and histology of wheat residues explain their decomposition in soil? Plant and

Soil 281:291–307.

Betts, W.B., Dart, R.K., Ball. A.S. and Pedlar, S.L. (1991). Biosynthesis and structure

of lignocellulose. In: Biodegradation: Natural and Synthetic Materials, Betts, W.

B. (Ed) Springer-Verlag, Berlin, Germany, pp 139–155.

Bisaria, R., Madan, M. and Vasudevan, P. (1997). Utilisation of agro-residues as animal

feed through bioconversion. Bioresource Technology 59: 5–8.

Blanchette, R.A. (1995). Biodeterioration of archaeological wood. Biodeterioration

Abstracts 92: 113–127.

Blanchette, R.A. (2000). A review of microbial deterioration found in archaeological

wood from different environments. International Biodeterioration &

Biodegradation 46: 189-204.

Bochek, A. M. (2003). Effect of hydrogen bonding on cellulose solubility in aqueous

and nonaqueous solvents. Russian Journal of Applied Chemistry 76: 1711-1719.

Box, G.E.P. and Behnken, D.W. (1960). Some new three level design for study of

quantitative variables. Technometrics 2: 455–475.

Boyley, C.D., Kropp, B.R. and Reid, I.D. (1992). Solubilization and mineralization of

lignin by white rot fungi. Applied and Environmental Microbiology 58: 3217–

3224.

Breen, A. and Singleton, F.L. (1999). Fungi in lignocellulose breakdown and

biopulping. Current Opinion in Biotechnology 10: 252-258.

Brownell, H.H., Yu, E.K.C. and Saddler, J.N. (1986). Steam-explosion pretreatment of

wood: effect of chip size, acid, moisture content and pressure drop. Biotechnology

and Bioengineering 28: 792–801.

Burlat, V., Ambert, K., Ruel, K. and Joseleau, J.P. (1997). Relationship between the

nature of lignin and the morphology of degradation performed by white-rot fungi.

Plant Physiology and Biochemistry, 35: 645–654.

Buswell, J.A., Cai, Y. and Chang, S.T. (1995) Effect of nutrient and manganese

peroxidase and laccase production by Lentinula edodes. FEMS Microbiology

Letter 128: 81-88.

Cai, Y., Chapman, S.J., Buswell, J.A. and Chang, S.T. (1999). Production and

distribution of endoglucanase, cellobiohydrolase, and B-glucosidase components


158

of the cellulolytic system of Volvariella volvacea, the edible straw mushroom.

Applied and Environmental Microbiology 65: 553–559.

Capelari, M. and Zadrazil, F. (1997). Lignin degradation and in vitro digestibility of

wheat straw treated with Brazilian tropical species of white rot fungi. Folia

Microbiologica 42: 481-487.

Chakraborty, N., Sarkar, G.M. and Lahiri, S.C. (2002). Biomethanation of plant

materials and agricultural residues using dung samples as wild population of

microbes and also with isolated methanogens. The Environmentalist 22: 173–182.

Chalamcherla, V., Maringanti, S.A., Muvva, V.L., Mangamoori, L.N. and Ramireddy,

M.R. (2009). Use of lignocellulolytic mutants of Pleurotus ostreatus in ruminant

feed formulations. BioResources 4: 142-154.

Chander, M. and Arora, D.S. (2007). Evaluation of some white rot fungi for their

potential to decolourise industrial dyes. Dyes Pigments 72: 192-198.

Chefetz, B., Kerem, Z., Chen, Y. and Hadar, Y. (1998). Isolation and partial

characterization of laccase from a thermophilic composted municipal solid waste.

Soil Biology & Biochemistry 30: 1091-1098.

Chen, G.C. and Johnson, B.R. (1983). Improved colorimetric determination of cell wall

chitin in wood decay fungi. Applied and Environmental Microbiology 46: 13-16.

Chen, J., Fales, S.L., Varga, G.A. and Royse, D.J. (1995). Biodegradation of cell wall

components of maize stover colonized by white-rot fungi and resulting impact on

in-vitro digestibility. Journal of Science of Food Agriculture 68: 91–98.

Chen, J., Fales, S.L., Varga, G.A. and Royse, D.J. (1996). Biodegradability of free

monomeric and cell-wall-bound phenolic acids in maize stover by two strains of

white-rot fungi. Journal of Science of Food Agriculture 71: 145–150.

Cherney, J.H., Cherney, D.J.R. and Casler, M.D. (2003). Low intensity harvest

management of reed canary grass. Agronomy Journal 95: 627–634.

Chew, B.P. (1995). Antioxidant vitamins affect food animal immunity and health.

Journal of Nutrition 125: 1804s-1808s.

Christiernin, M. (2006). Lignin composition in cambial tissues of poplar. Plant

Physiology and Biochemistry 44: 700-706.

Ciapetti, G., Cenni, E., Pratelli, L. and Pizzoferrato, A. (1993). In vitro evaluation of

cell/biomaterial interaction by MTT assay. Biomaterials 14: 359-64.


159

Ciegler, A. and Bennett, J.W. (1980). Mycotoxins and Mycotoxicoses. BioScience 30:

512-515.

Cohen, R., Persky, L. and Hadar, Y. (2002). Biotechnological applications and potential

of wood degrading mushrooms of the genus Pleurotus. Applied Microbiology and

Biotechnology 58: 582–594.

Colberg, P.J. (1988). Anaerobic microbial degradation of cellulose, lignin, oligolignols,

and monoaromatic lignin derivatives. In: A.J.B. Zehnder (Ed) Biology of

Anaerobic Microorganisms. John Wiley & Sons, New York USA, pp 333–372.

Commanday, F. and Macy, J.M. (1985). Effect of substrate nitrogen on lignin

degradation by Pleurotus ostreatus. Archives of Microbiology 142: 61-65.

Cowling, E.B. (1961). Comparative biochemistry of the decay of sweetgum sapwood by

white-rot and brown-rot fungi. U.S. Department of Agriculture. Technical bulletin

no 1258.

Cullen, D. and Kersten, P. (1992). Fungal enzymes for lignocellulose degradation. In:

Applied molecular genetics of filamentous fungi. Kinghorn, J.R.; Turner, G. (Eds)

New York: Chapman & Hall. Chapter 4 pp 100-131.

Cullen, D. and Kersten, P.J. (2004) Enzymology and molecular biology of lignin

degradtion. In: Brambl, R.; Marzluf, G.A. (Eds), The Mycota III; Biochemistry

and molecular biology, 2nd edition. Berlin-Heidelberg. Berlin-Heidelberg:

Springer- Verlag. 13: 249-273.

Cullen, D. and Kersten, P.J. (2004). Enzymology and molecular biology of lignin

degradation. In: The Mycota: Biochemistry and molecular biology. R. Brambl,

G.A. Marzluf (Eds) Springer pp 251.

Czerkowski, J.W. (1986). An introduction to rumen studies. Pergamon Press, Oxford,

UK, pp 9–10.

D’souza, T.M., Boominathan, K. and Reddy, C.A. (1996). Isolation of laccase gene-

specific sequences from white rot and brown rot fungi by PCR. Applied and

Environmental Microbiology 62: 3739–3744.

Daniel, G. and Nilsson, T. (1998). Developments in the study of soft rot and bacterial

decay. In: Forest Products Biotechnology, A. Bruce, J.W. Palfreyman, (Eds),

Taylor & Francis, London.


160

Dashtban, M., Schraft, H. and Qin, W. (2009). Fungal bioconversion of lignocellulosic

residues; opportunities and perspectives. International Journal of Biological

Sciences 5: 578–595.

Datta, R. (1981). Acidogenic fermentation of lignocellulose - acid yield and conversion

of components. Biotechnology and Bioengineering 23: 2167-2170.

Deng, L., Wang, Y., Zhang, Y. and Ma, R. (2007). The enhancement of ammonia

pretreatment on the fermentation of rice straw hydrolysate to xylitol. Journal of

Food Biochemistry 31: 195–205.

Deobald, L.A. and Crawford, D.L. (1997). Lignocellulose biodegradation. In: Manual of

Environmental Microbiology (Eds) C. J. Hurst, G. R. Knudsen, L. D. Stetzenbach

and M.V. Walter ASM Press, Washington DC, USA, pp 730–737.

Deshpande, P., Nair, S. and Khedkar, S. (2009). Water hyacinth as carbon source for the

production of cellulase by Trichoderma reesei. Applied Biochemistry and


Dhanoa, M.S., France, J., Crompton, L.A., Mauricio, R.M., Kebreab, E., Mills, J.A.N.,

Sanderson, R., Dijkstra, J. and Lo´pez, S. (2004). Technical note: A proposed

method to determine the extent of degradation of a feed in the rumen from the

degradation profile obtained with the in vitro gas production technique using feces

as the inoculum. Journal of Animal Science 82: 733–746.

Dhanoa, M.S., France, J., Crompton, L.A., Mauricio, R.M., Kebreab, E., Mills, J.A.N.,

Sanderson, R., Dijkstra, J. and Lo´pez, S. (2004). Technical note: A proposed

method to determine the extent of degradation of a feed in the rumen from the

degradation profile obtained with the in vitro gas production technique using feces

as the inoculum. Journal of Animal Science 82: 733–746.

Di Luccio, M., Capra, F., Ribeiro, N.P., Vargas, G.D.L.P., Freire, D.M.G. and Oliveira,

D. (2004). Effect of temperature, moisture, and carbon supplementation on lipase

production by solid state fermentation of soy cake by Penicillium simplicissimum.

Applied Biochemistry and Biotechnology 113: 173–80.

Dill, I. and Kraepelin, G. (1986). Palo Podrido: Model for extensive delignification of

wood by Ganoderma applanatum. Applied and Environmental Microbiology 52:

1305-1312.


161

Dorado, J., Almendros, G., Camarero, S., Mart, A.T. and Vares, T. (1999).

Transformation of wheat straw in the course of solid-state fermentation by four

ligninolytic basidiomycetes. Enzyme and Microbial Technology 25: 605- 612.

Durot, N., Gaudard, F. and Kurek, B. (2003). The unmasking of lignin structures in

wheat straw by alkali. Phytochemistry 63: 617-623.

Eduardo, V., Sergio, L. and Roberto, G. (2001). Seasonal variation and enzymatic

potential of microfungi associated with the decomposition of Nothofagus pumilio

leaf litter. Revista Chilena De Historia Natural 74: 737-749.

Egland, P.G., Pelletier, D.A., Dispensa, M., Gibson, J. and Harwood, C.S. (1997). A

cluster of bacterial genes for anaerobic benzene ring biodegradation. Proceedings

of the National Academy of Sciences USA 94: 6484–6489.

El Shaer, H.M., Omed, H.M., Chamberlain, A.G. and Axford, R.F.E. (1987). Use of

faecal organisms from sheep for the in vitro determination of digestibility. Journal

of Agricultural Science 109: 257-259.

Elder, D.J. and Kelly, D.J. (1994). The bacterial degradation of benzoic acid and

benzenoid compounds under anaerobic conditions: Unifying trends and new

perspectives. FEMS Microbiology Reviews 13: 441–468.

Elisashvili, V., Penninckx, M., Kachlishvili, E., Tsiklauri, N., Metreveli, E., Kharziani,

T. and Kvesitadze, G. (2008). Lentinus edodes and Pleurotus species

lignocellulolytic enzymes activity in submerged and solid state fermentation of

lignocellulosic wastes of different composition. Bioresource Technology 99: 457–

462.

Eriksson, K.E., Blanchette, R.A. and Ander, P. (1990). Microbial and enzymatic

degradation of wood and wood components, Springer, Berlin, Germany.

Espindola, M.S., DePeters, E.J., Fadel, J.G., Zinn, R.A. and Perez-Monti, H. (1997).

Effects on nutrient digestion of wheat processing and method of tallow addition to

the diets of lactating dairy cows. Journal of Dairy Science 80: 1160-1171.

Evans, C.S., Dutton, M.V., Guille´n, F. and Veness, R.G. (1994). Enzymes and small

molecular mass agents involved with lignocellulose degradation. FEMS

Microbiology Reviews 13: 235–240.

Fan, L.T., Lee, Y. and Gharpuray, M.M. (1982). The nature of lignocellulosics and their

pretreatments for enzymatic hydrolysis. Advances in Biochemical Engineering 23:

157 187.


162

Fazaeli, H. (2007). Nutritive value index of treated wheat straw with Pleurotus fungi.

Biotechnology in Animal Husbandry 23: 169–180.

Fengel, D. and Wegener, G. (1989). Wood – Chemistry, Ultrastructure, Reactions.

Walter de Gruyter, Berlin, New York.

Ferraz, A., Córdova, A.M., Machuca, A. (2003). Wood biodegradation and enzyme

production by Ceriporiopsis subvermispora during solid-state fermentation of

Eucalyptus grandis. Enzyme and Microbial Technology 32: 59–65.

Fonnesbeck, P.V. (1981). Estimating digestible energy and TDN for horses with

chemical analysis of feeds. Journal of Animal Science 53: 241–242.

Fonnesbeck, P.V., Christiansen, M.L. and Harris, L.E. (1981). Linear models for

calculating digestible energy for sheep diets. Journal of Animal Science 52: 1183-

1196.

Fonseca, A.J.M., Dias-da-Silava, A.A. and Laurenco, A.L.G. (2001) Effect of maize

and citrus pulp supplementation of ureatreated wheat straw on intake and

productivity in female lambs. Journal of Animal Science 73:123-136.

Ford, C.W., Morrison, I.M. and Wilson, J.R. (1979). Temperature effects on lignin,

hemicellulose and cellulose in tropical and temperate grasses. Australian Journal

of Agricultural Research 30: 621–633.

Frei, M., Kohno, Y., Wissuwa, M., Makkar, H.P.S. and Becker, K. (2011). Negative

effects of tropospheric ozone on the feed value of rice straw are mitigated by an

ozone tolerance QTL. Global Change Biology 17: 2319–2329.

Friedman, M. (2004). Applications of the ninhydrin reaction for analysis of amino acids,

peptides, and proteins to agricultural and biomedical sciences. Journal of

Agricultural and Food Chemistry 52: 385–406.

Fritz, J.O., Moore, K.J. and Jaster, E.H. (1990). Digestion kinetics and cell wall

composition of Brown Midrib Sorghum×Sudan grass morphological components.

Crop Science 30: 213–219.

Frutos, P., Torrado, S., Perez-Lorenzo, M.E. and Frutos, G. (2000). A validated

quantitative colorimetric assay for gentamicin. Journal of Pharmaceutical and

Biomedical Analysis 21: 1149–1159.

Fu, S.Y., Yu, H. and Buswell, J. A. (1997). Effect of nutrient nitrogen and manganese

on manganese peroxidase and laccase production by Pleurotus sajor-caju. FEMS

Microbiology Letters 147: 133-137.


163

Gao, D., Du, L., Yang, J., Wu, W.M. and Liang H. (2010). A critical review of the

application of white rot fungus to environmental pollution control. Critical

Reviews in Biotechnology, 30: 70–77.

Garcia, A., Thiex, N., Kalscheur, K. and Tjardes, K. (2003). Interpreting hay & haylage

analysis. Dairy Science ExEx4002 (rev).

Gilbert, C. and Slavik, M. (2004). Determination of toxicity of Campylobacter jejuni

isolated from humans and from poultry carcasses acquired at various stages of

production. Journal of Applied Microbiology 97: 347–353.

Gilbertson, R.L. (1980). Wood-rotting fungi of North America. Mycologia 72: 1–49.

Gill, M.S., Pal, S.S. and Ahlawat, I.P.S. (2008). Approaches for sustainability of rice

(Oryza sativa)–wheat (Triticum aestivum) cropping system in Indo-Gangetic

plains of India—a review. Indian Journal of Agronomy 53: 81–96.

Glenn, J.K., Akileswaran, L. and Gold, M.H. (1986). Mn(II) oxidation is the principal

function of the extracellular Mn-peroxidase from Phanerochaete chrysosporium.

Archives of Biochemistry and Biophysics 251: 688-696.

Goering, H.K. and Van Soest, P.J. (1970). Forage fiber analysis, Agriculture handbook

379, U.S. Dept. of Agriculture.

Gold, M.H. and Alic, M. (1993). Molecular biology of the lignin degrading

basidiomycetes Phanerochaete chrysosporium. Microbiological Reviews. 57:605-

622.

Goodell, B. (2003). Brown-rot fungal degradation of wood: our evolving view. In:

Wood deterioration and preservation. B. Goodell, D.D. Nicholas, T.P. Schultz

(eds). ACS Symposium series 845, Washington DC, pp 97–118.

Grabber, J.H. (2005). How do lignin composition, structure, and cross-linking affect

degradability? A review of cell wall model studies. Crop Science 45: 820-831.

Granzin, B.C. and McL Dryden, G. (2003). Effects of alkalis, oxidants and urea on the

nutritive value of rhodes grass (Chloris gayana cv. Callide). Animal Feed Science

and Technology 103: 113–122.

Hastrup, A.C.S., Howell, C., Jensen, B. and Green F.III (2011). Non-enzymatic

depolymerization of cotton cellulose by fungal mimicking metabolites.

International Biodeterioration & Biodegradation 65: 553-559.


164

Hatakka, A. (1994). Lignin-modifying enzymes from selected white-rot fungi:

production and role from in lignin degradation. FEMS Microbiology Reviews 13:

125-135.

Hatakka, A. (2001). Biodegradation of lignin: In: Lignin humic substances and coal.

Wiley-VCH, pp 129–145.

Hatakka, A. and Hammel, K.E. (2010). Fungal degradation of lignocellulose. In: The

Mycota, Industrial applications . K. Esser, M. Hofrichte (eds), Springer, pp 320-

321.

Hatvani, N., Kesseruˆ, P. and Me´cs, I. (2003). Effects of different inorganic salts and

organic nutrient components on the growth of Lentinula edodes (Shiitake)

mycelium on solid medium. Journal of Science of Food Agriculture 83:1439–

1444.

Heider, J. and Fuchs, G. (1996). Anaerobic metabolism of aromatic compounds.

European Journal of Biochemistry 243: 577–596.

Hendriks, A.T.W.M. and Zeeman, G. (2009). Pretreatments to enhance the digestibility

of lignocellulosic biomass. Bioresource Technology 100: 10–18.

Highley, T.L. and Illman, B.L. (1991). Progress in understanding how brown-rot fungi

degrade cellulose. Biodeterioration Abstracts 5: 231–244.

Hofrichter, M. (2002). Review: lignin conversion by manganese peroxidase (MnP).

Enzyme and Microbial Technology 30: 454–466.

Hölker, U. and Lenz, J. (2005). Solid-state fermentation: are there any biotechnological

advantages? Current Opinion in Microbiology 8: 301–306.

Hongzhang, C. and Liying, L. (2007). Unpolluted fractionation of wheat straw by

steam explosion and ethanol extraction. Bioresource Technology 98: 66-76.

http://www.ccrc.uga.edu/~mao/intro/ouline.htm (Complex Carbohydrate Research

Centre, The University of Georgia) downloaded on 28/01/2011.

Hurst, P.L., Sinclair, B.K. and Eason, J.R. (1995). Amino acids interfere with the

ninhydrin assay for asparagines. Food Chemistry 53: 467–469.

Isroi, Millati, R., Syamsiah, S., Niklasson, C., Cahyanto, M.N., Lundquist, K. and

Taherzadeh, M.J. (2011). Biological pretreatment of lignocelluloses with white rot

fungi and its applications: A review. BioResources 6:

Jalč, D., Nerud, F. and Siroka, P. (1998). The effectiveness of biological treatment of

wheat straw by white-rot fungi. Folia Microbiologica 43: 687-689.


165

Javor, T., Buchberger, W. and Faix, O (2003) Capillary electrophoretic determination of

lignin degradation. products obtained by permanganate oxidation. Analytica

Chimica Acta 484: 181–187.

Jeya, M., Zhang, Y.W., Kim, I.W. and Lee, J.K. (2009). Enhanced saccharification of

alkali-treated rice straw by cellulase from Trametes hirsuta and statistical

optimization of hydrolysis conditions by RSM. Bioresource Technology 100:

5155-5161.

Jin, L., Sellers, Jr.T., Schultz, T.P. and Nicholas, D.D. (1990). Utilization of lignin

modified by brown-rot fungi. I. properties of flakeboard produced with a brown-

rotted lignin modified phenolic adhesive. Holzforschung 44: 207–210.

Jin, S. and Chen, H. (2006). Structural properties and enzymatic hydrolysis of rice

straw. Process Biochemistry 41: 1261-1264.

Jones, D.I.H. and Hayward, M.V. (1973). A cellulase digestion technique for predicting

the dry matter digestibility of grasses. Journal of the Science of Food and

Agriculture 24: 1419-1426.

Jung, H.G., Valdez, F.R.J., Abad, A.R., Blanchette, R.A. and Hatfield, R.D. (1992).

Effect of white rot basidiomycetes on chemical composition and in vitro

digestibility of oat straw and alfalfa stems. Journal of Animal Science 70:1928-

1935.

Jung, H.J.G. (1997). Analysis of forage fiber and cell walls in ruminant nutrition.

Journal of Nutrition 127: 810S-813S.

Kachlishvili, E. Penninckx, M.J. Tsiklauri N. and Elisashvili V. (2005). Effect of

nitrogen source on lignocellulolytic enzyme production by white-rot

basidiomycetes under solid-state cultivation. World Journal of Microbiology and


Kamra, D.N. and Zadrazˇil, F. (1988). Microbiological improvement of lignocellulosics

in animal feed production: a review. In: Treatment of lignocellulosics with white-

rot fungi, F. Zadrazˇil and P. Reiniger (Eds.) Elsevier, Essex, UK, pp 56–63.

Kapoor, R.K., Sharma, K.K., Kuhar, S. and Kuhad, R.C. (2005). Diversity of lignin

degrading microorganisms, ligninolytic enzymes and their biotechnological

applications. In: Microbial diversity: Current perspectives and potential

applications. Eds. T. Satyanarayana and B. N. Johri, I. K. International Pvt Ltd, pp

815-846.


166

Kerem, Z. and Hadar, Y. (1993). Chemically defined solid-state fermentation of

Pleurotus ostreatus. Enzyme and Microbial Technology 15: 785-790.

Kerem, Z., Friesen, D. and Hadar, Y. (1992). Lignocellulose degradation during solid

state fermentation: Pleurotus ostreatus verses Phanerochaete chrysosporium.

Applied and Environmental Microbiology 58, 1121–1127.

Kirk, T.K. (1975). Chemistry of lignin degradation by wood-destroying fungi. In:

Biological transformation of wood by microorganisms, W. Liese (Ed.) Springer.

Kirk, T.K. and Cullen, D. (1998). Enzymology and molecular genetics of wood

degradation by white rot fungi. In : Environmentally friendly technologies for the

pulp and paper industry, R.A. Young and M. Akhtar (Eds), John Wiley & Sons,

Inc., pp 273-307.

Kirk, T.K. and Farrell, R.L. (1987). Enzymatic ‘‘combustion’’: the microbial

degradation of lignin. Annual Review of Microbiology 41: 465–505.

Kishi, K., Wariishi, H., Marquez, L., Dunford, H.B. and Gold, M.H. (1994). Mechanism

of manganese peroxidase compound II reduction: Effect of organic acid chelators

and pH. Biochemistry 33: 8694–8701.

Ko, J.J., Shimizu, Y., Ikeda, K., Kim, S.K., Park, C.H. and Matsui S. (2009).

Biodegradation of high molecular weight lignin under sulfate reducing conditions:

Lignin degradability and degradation by-products. Bioresource Technology 100:

1622–1627.

Kurek, B. and Odier, E. (1990). Influence of lignin peroxidase concentration and

localisation in lignin biodegradation by Phanerochaete chrysosporium. Applied

Microbiology and Biotechnology 34: 264-269.

Laine, C. (2005). Structures of hemicelluloses and pectins in wood and pulp. Chemical

Technology. Dissertation, The Aalto University Library, Otaniemi

Lam, T.B.T., Kadoya, K. and Iiyama, K. (2001). Bonding of hydroxycinnamic acids to

lignin: ferulic and p-coumaric acids are predominantly linked at the benzyl

position of lignin, not the b-position, in grass cell walls. Phytochemistry 57: 987-

992.

Lateef, A., Oloke, J.K., Kana, G.E.B., Oyeniyi, S.O., Onifade, O.R., Oyeleye, A.O.,

Oladosu, O.C. and Oyelami, A.O. (2008). Improving the quality of agro-wastes by

solid state fermentation: enhanced antioxidant activities and nutritional qualities.

World Journal of Microbiology and Biotechnology 24: 2369–2374.


167

Lee, J.W., Kim, H.Y., Koo, B.W., Choi, D.H., Kwon, M. and Choi, I.G. (2008).

Enzymatic saccharification of biologically pretreated Pinus densiflora using

enzymes from brown rot fungi. Journal of Bioscience and Bioengineering 106:

162–167.

Lena, G.Di, Patroni, E. and Quaglia, G.B. (1997). Improving the nutritional value of

wheat bran by a white-rot fungus. International Journal of Food Science and

Technology 32: 513-519.

Levin, L., Herrmann, C. and Papinutti, V. (2008). Optimization of lignocellulolytic

enzyme production by the white-rot fungus Trametes trogii in solid-state

fermentation using response surface methodology. Biochemical Engineering

Journal 39: 207–214.

Lonsane, B.K., Saucedo-Castaneda, G., Raimbault, M., Roussos, S., Viniegra-Gonzalez,

G., Ghildyal, N.P., Ramakrishna, M. and Krishnaiah, M.M. (1992). Scale-up

strategies for solid state fermentation systems. Process Biochemistry 27: 259–273.

Malherbe, S. and Cloete, T.E. (2002). Lignocellulose biodegradation: fundamentals and

applications. Re/Views in Environmental Science & Bio/Technology 1:105-114.

Maman, O., Marseille, F., Guillet, B. and Disnar, J.R., Morin, P. (1996). Separation of

phenolic aldehydes, ketones and acids from lignin degradation by capillary zone

electrophoresis. Journal of Chromatography 755: 89-97.

Mandebvu, P., West, J.W., Froetschel, M.A., Hatfield, R.D., Gates, R.N. and Hill, G.M.

(1999). Effect of enzyme or microbial treatment of bermudagrass forages before

ensiling on cell wall composition, end products of silage fermentation and in situ

digestion kinetics. Animal Feed Science and Technology 77: 317–329.

Maron, D. and Ames, B. (1983). Revised methods for the Salmonella mutagenicity test.

Mutation Research 113: 173-215.

Martínez, Á.T., Speranza, M., Dueñas, F.J.R., Ferreira, P., Camarero, S., Guillén, F.,

Martínez, M.J., Gutiérrez, A. and Río, J.C. (2005). Biodegradation of

lignocellulosics: Microbial, chemical, and enzymatic aspects of the fungal attack

of lignin. International Microbiology 8: 195–204.

Martínez, A.T. , Camarero, S. , Guillén, F. , Gutiérrez, A. , Muñoz, C. , Varela, E.,

Martínez, M.J. , Barrasa, J.M. , Ruel, K. and Pelayo, J.M. (1994). Progress in

biopulping of non-woody materials: Chemical, enzymatic and ultrastructural


168

aspects of wheat straw delignification with ligninolytic fungi from the genus

Pleurotus. FEMS Microbiology Reviews 13: 265-273.

Martins, S., Mussatto, S. I., Martínez-Avila, G., Montañez-Saenz, J., Aguilar, C. N. and

Teixeira, J. A. (2011). Bioactive phenolic compounds: Production and extraction

by solid-state fermentation: A review. Biotechnology Advances 29: 365–373.

McCarthy, A.J. (1987). Lignocellulose-degrading actinomycetes. FEMS Microbiology

Reviews 46: 145–163.

Migwi, P.K., Godwin, I., Nolan, J.V. and Kahn, L.P. (2011). The effect of energy

supplementation on intake and utilisation efficiency of urea-treated low-quality

roughage in sheep I. Rumen digestion and feed intake. Asian-Australian Journal

of Animal Science 24: 623 – 635.

Mikiashvili, N., Wasser, S.P., Nevo, E. and Elisashvili, V. (2006). Effects of carbon and

nitrogen sources on Pleurotus ostreatus ligninolytic enzyme activity. World

Journal of Microbiology Biotechnology 22: 999–1002.

Miller, G.L. (1959). Use of dinitrossalicylic acid reagent for determination of reducing

sugars. Analytical Chemistry 31: 426-428.

Minson, D.J. (1982). Effect of chemical composition on feed digestibility and

metabolizable energy. Nutrition Abstracts and Reviews. Series B, 52: 592 - 615.

Minson, D.J. (1990). Forage in ruminant nutrition. San Diego, CA: Academic Press. pp.

129 - 130.

Moore, K. J. and Hatfield, R. D. (1994). Carbohydrates and forage quality. In: Forage

quality, evaluation, and utilization, Fahey, G. C., Jr., Collins, M. C., Mertens,

D. R. and Moser, L. E., (Eds) ASA-CSSA-SSSA, Madison, WI, pp. 229–280.

Moore, S. and Stein, W.H. (1948). Photometric ninhydrin method for use in the

chromatography of amino acids. Journal of Biological Chemistry 176: 367–388.

Morozova, O.V., Shumakovich, G.P., Gorbacheva, M.A., Shleev, S.V. and Yaropolov

A.I. (2007). “Blue” Laccases. Biochemistry (Moscocw), 72: 1136-1150.

Mortelmans, K. and Zeiger, E. (2000). The Ames Salmonella/microsome mutagenicity

assay. Mutation Research 455: 29-60.

Mosier, N.S., Wyman, C., Dale, B., Elander, R., Lee, Y.Y., Holtzapple, M. and Ladisch,

M. (2005). Features of promising technologies for pretreatment of lignocellulosic

biomass. Bioresource Technology 96: 673 686.


169

Mosmann, T. (1983). Rapid colorimetric assay for cellular growth and survival:

application to proliferation and cytotoxicity assays. Journal of Immunologic

Methods 65: 55–63.

Murata, M., Sugiura, M., Sonokawa, Y., Shimamura, T. and Homma, S. (2002).

Properties of chlorogenic acid quinone: relationship between browning and

formation of hydrogen peroxide from a quinone solution. Bioscience

Biotechnology Biochemistry 66: 2525-2530.

Nagarajan, S. (2005). Can India produce enough wheat even by 2020? Current Science

89: 1467-1471.

Niemenmaa, O., Uusi-Rauva, A. and Hatakka A. (2008). Demethoxylation of

[O14CH3]-labelled lignin model compounds by the brown-rot fungi

Gloeophyllum trabeum and Poria (Postia) placenta. Biodegradation 19: 555–565.

Nigam, P.S., Gupta, N. and Anthwal, A. (2009). Pre-treatment of agro-industrial

residues. In: Biotechnology for agro-industrial residues utilization, P.S. Nigam

and A. Pandey (Eds), first ed. Springer, Netherlands, pp 13–33.

Niladevi, K.N. (2009). Ligninolytic enzymes. In: Biotechnology for Agro-Industrial

Residues Utilisation (Eds.) P. S. Nigam, A. Pandey, Springer, chapter 22, pp 398-

410.

Nilsson, T., Daniel, G., Kirk, T.K. and Obst, J.R. (1989). Chemistry and microscopy of

wood decay by some higher ascomycetes. Holzforschung 43: 11-18.

Nilsson, T., Daniel, G., Kirk, T.K. and Obst, J.R. (1989). Chemistry and microscopy of

wood decay by some higher ascomycetes. Holzforschung 43: 11–18.

Nilsson, T., Daniel, G., Kirkk, T. K. and Obst, J.R. (1989). Chemistry and microscopy

of wood decay by some higher ascomycetes. Holzforschung 43: 11–18.

Nordblom, T.L. (1988). The importance of crop residues as feed resources in West Asia

and North Africa. In: Proceedings of plant breeding and the nutritive value of crop

residues, Reed, J.D., Capper, B.S. and Neate, P.J.H. (Eds), International Livestock

Centre for Africa (ILCA), Addis Ababa, pp 41–61.

Okano, K., Iida, Y., Samurai, M., Prasetya, B., Usagawa, T. and Watanabe, T. (2006).

Comparison of in vitro digestibility and chemical composition among sugarcane

bagasses treated by four white rot fungi. Animal Science Journal 77: 308–313.

Otjen, L., and Blanchette, R. (1987). Assessment of 30 white rot basidiomycetes for

selective lignin degradation. Holzforschung 41: 343-349.


170

Ouédraogo-Koné, S., Kaboré-Zoungrana, C.Y. and Ledin, I. (2008). Intake and

digestibility in sheep and chemical composition during different seasons of some

West African browse species. Tropical Animal Health and Production 40: 155-

164.

Pan, X., Kadla, J.F., Ehara, K., Gilkes, N. and Saddler, J.N. (2006). Organosolv ethanol

lignin from hybrid poplar as a radical scavenger: relationship between lignin

structure, extraction conditions, and antioxidant activity. Journal of Agriculture

and Food Chemistry 54: 5806-5813.

Panasiuk, R., Amarowicz, R., Kostyra, H. and Sijtsma, L. (1998). Determination of α-

amino nitrogen in pea protein hydrolysates: a comparison of three analytical

methods. Food Chemistry 62: 363–367.

Pandey, A. (2003). Solid state fermentation. Biochemical Engineering Journal 13: 81–

84.

Papatheofanous, M.G., Billa, E., Koullas, D.P., Monties, B. and Koukios, E.G. (1998).

Optimizing multisteps mechanical-chemical fractionation of wheat straw

components. Industrial Crops and Products 7: 249-256.

Papinutti, V.L. and Forchiassin, F. (2007). Lignocellulolytic enzymes from Fomes

sclerodermeus growing in solid-state fermentation. Journal of Food Engineering

81: 54-59.

Parimala, V., Krishnani, K.K., Gupta, B.P., Ragunathan, R., Pillai, S.M. and

Ravichandran, P. (2007). Removal of ammonia and nitrite from coastal water

using low-cost agricultural waste. Bulletin of Environmental Contamination and

Toxicology 78: 288–293.

Pérez, J., Muñoz-Dorado, J., de la Rubia, T. and Martínez, J. (2002). Biodegradation

and biological treatments of cellulose, hemicellulose and lignin: an overview.

International Microbiology 5:53-63.

Pouteau, C., Dole, P., Cathala, B., Averous, L. and Boquillon, N. (2003). Antioxidant

properties of lignin in polypropylene. Polymer Degradation and Stability 81: 9 -

18.

Råberg, U., Terziev, N. and Land, C.J. (2009). Early soft rot colonization of Scots

sapwood pine in above-ground exposure. International Biodeterioration and

Biodegradation 63: 236–240.


171

Rabinovich, M.L., Bolobova, A.V. and Vasil'chenko, L.G. (2004). Fungal

decomposition of natural aromatic structures and xenobiotics: A review. Applied

Biochemistry and Microbiology 40: 1–17.

Reddy, C.A. and Mathew, Z. (2001). Bioremediation potential of white rot fungi. In:

Fungi in Bioremediation. G.M. Gadd (Ed), Cambridge University Press,

Cambridge, UK.

Reid, I.D. (1983). Effects of nitrogen sources on cellulose and synthetic lignin

degradation by Phanerochaete chrysosporium. Applied and Environmental

Microbiology 45: 838-842.

Rismani-Yazdi, H. (2008). Bioconversion of cellulose into electrical energy in

microbial fuel cells. Ph. D. Thesis, The Ohio State University.

Ritter, S. K. (2008). Lignocellulose: A complex biomaterial. Plant Biochemistry 86: 15.

Riva, S. (2006). Laccases: blue enzymes for green chemistry. Trends in Biotechnology

24: 219-226.

Roche, N., Venague, A., Desgranges, C. and Durand, A. (1993). Use of chitin

measurement to estimate fungal biomass in solid state fermentation.

Biotechnology Advances 11: 677-683.

Rodgers, C.J., Blanford, C.F., Giddens, S.R., Skamnioti, P., Armstrong, F.A. and Gurr,

S.J. (2010). Designer laccases: a vogue for high-potential fungal enzymes? Trends

in Biotechnology 28: 63-72.

Roeder, R.A. (1995). Beyond deficiency: New views of vitamins in ruminant nutrition

and health: an overview. Journal of Nutrition 125: 1790S -1791S.

Rolz, C., De Leon, R., De Arriola, M.C. and De Cabrera, S. (1986). Biodelignification

of lemon grass and citronella bagasse by white rot fungi. Applied and

Environmental Microbiology 52: 607–611.

Rotz, C. A. (2004). Management to reduce nitrogen losses in animal production.

Journal of Animal Science 82: E119-E137.

Saha, B.C., Iten, L.B., Cotta, M.A. and Wu, Y.V. (2005). Dilute acid pretreatment,

enzymatic saccharification and fermentation of wheat straw to ethanol. Process

Biochemistry 40: 3693–3700.

Sánchez, C. (2009). Lignocellulosic residues: Biodegradation and bioconversion by

fungi. Biotechnology Advances 27: 185–194.


172

Sangnark, A. and Noomhorm, A. (2004). Chemical, physical and baking properties of

dietary fiber prepared from rice straw. Food Research International 37: 66-74.

Sarnklong, C., Cone, J.W., Pellikaan, W. and Hendriks, W.H. (2010). Utilization of rice

straw and different treatments to improve its feed value for ruminants: A Review.

Asian-Australian Journal of Animal Science 23: 680 – 692.

Sgouras, D. and Duncan, R. (1990). Methods for the evaluation of biocompatibility of

soluble synthetic polymers which have potential for biomedical use: 1—Use of

the tetrazolium-based colorimetric assay (MTT) as a preliminary screen for

evaluation of in vitro cytotoxicity. Journal of Material Science: Materials in

Medicine 1:61–68.

Sharma K. K., Shrivastava B., Nandal P., Sehgal N., Sastry V.R.B., Kalra, A., Kuhad

R.C. (2011). Nutritional and toxicological assessment of white rot fermented

animal feed. Indian Journal of Microbiology DOI 10.1007/s12088-011-0222-2

Sharma, P. and Gujral, H.S. (2010). Milling behavior of hulled barley and its thermal

and pasting properties. Journal of Food Engineering 97: 329–334.

Sharma, R.K. and Arora, D.S. (2010). Changes in biochemical constituents of paddy

straw during degradation by white rot fungi and its impact on in vitro digestibility.

Journal of Applied Microbiology 109: 679–686.

Shary, S., Sally, A., Ralph, and Hammel K.E. (2007). New insights into the ligninolytic

capability of a wood decay Ascomycete. Applied and Environmental

Microbiology 73: 6691–6694.

Shen, H.Sh., Ni, D.B. and Sundstøl, F. (1998). Studies on untreated and urea-treated rice

straw from three cultivation seasons: 1. Physical and chemical measurements in

straw and straw fractions. Animal Feed Science and Technology 73: 243-261.

Shimada, M., Akamatsu, Y., Tokimatsu, T., Mii, K. and Hattori, T. (1997). Possible

biochemical roles of oxalic acid as a low molecular weight compound involved in

brown-rot and white-rot wood decays. Journal of Biotechnology 53:103–113.

Shrestha, P., Rasmussen, M., Khanal, S.K., Pometto, III A.L. and Van Leeuwen, J.H.

(2008). Solid-substrate fermentation of corn fiber by Phanerochaete

chrysosporium and subsequent fermentation of hydrolysate into ethanol. Journal

of Agriculture and Food Chemistry 56: 3918–3924.


173

Shrivastava, B., Thakur, S., Khasa, Y.P., Gupte, A., Puniya, A.K. and Kuhad, R.C.

(2011). White rot fungal conversion of wheat straw to energy rich cattle feed.

Biodegradation 22: 823–831.

Singh, D. and Chen, S. (2008). The white-rot fungus Phanerochaete chrysosporium:

conditions for the production of lignin-degrading enzymes. Applied Microbiology

and Biotechnology 81: 399–417.

Singleton, V.L., Ortofehr, R. and Lamuela-Raventos, R.M. (1999). Analysis of total

phenols and other oxidation substrate and antioxidants by means of Folin-

Ciocalteau reagent. Methods in Enzymology 299: 152-178.

Sinskey, A.J. and Batt, C.A. (1987). Fungi as a source of protein. In: Food and

Beverage, L.R. Benchat (Ed.), Von Nostrand Reinhold, New York, pp. 435–471.

Sjöström, E. (1993). Wood Chemistry, 2d edition. Academic Press Inc. San Diego,

California.

Sun, S.W., Lin, Y.C., Weng, Y.M. and Chen, M.J. (2006). Efficiency improvements on

ninhydrin method for amino acid quantification. Journal of Food Composition

Analysis 19: 112– 117.

Taniguchi, M., Suzuki, H., Watanabe, D., Sakai, K., Hoshino, K. and Tanaka, T. (2005).

Evaluation of pretreatment with Pleurotus ostreatus for enzymatic hydrolysis of

rice straw. Journal of Bioscience and Bioengineering 100:637-643.

Theander, O. and Aman, P. (1984) Straw and other fibrous by-products as feed,

Sundstal and Owen (Eds) Elsevier, Amsterdam, pp 45-78.

Thekkiniath, J., Paul, S., Dureja, P. and Dhar D.W. (2010). Physiological studies on

endorhizospheric establishment of Azotobacter chroococcum in wheat. Journal of

Basic Microbiology 50: 266–273.

Tien, M. and Kirk, T.K. (1984). Lignin-degrading enzyme from Phanerochaete

chrysosporium: purification, characterization, and catalytic properties of a unique

H2O2-requiring oxygenase. Proceedings of National Academy of Science USA

81: 2280–2284.

Tilley, J.M.A. and Terry, R.A.A. (1963). Two-stage technique for the in vitro digestion

of forage crops. Journal of British Grassland Society 18:104-11.

Tilley, J.M.A. and Terry, R.A.A. (1963). Two-stage technique for the in vitro digestion

of forage crops. Journal of British Grassland Society 18:104-11.


174

Trigo, C. and Ball, A.S. (1994). Is the solubilized product from the degradation of

lignocellulose by actinomycetes a precursor of humic substances? Microbiology

140: 3145–3152.

Trupkin, S., Levin, L., Forchiassin, F. and Viale, A. (2003). Optimization of a culture

medium for ligninolytic enzyme production and synthetic dye decolorization

using response surface methodology. Journal of Industrial Microbiology

Biotechnology 30: 682–690.

Tuomela, M., Oivanen, P. and Hatakka A. (2002) Degradation of synthetic 14C-lignin

by various white-rot fungi in soil. Soil Biology and Biochemistry 34: 1613–1620.

Ustinov, B.B., Gusakov, A.V., Antonov, A.I. and Sinitsyn, A.P. (2008). Comparison of

properties and mode of action of six secreted xylanases from Chrysosporium

lucknowense. Enzyme and Microbial Technology 43: 56–65.

Vadiveloo, J. (2000). Nutritional properties of the leaf and stem of rice straw. Animal

feed Science and Technology 83: 57-65.

Vadiveloo, J. and Fade, J.G. (2009). The response of rice straw varieties to urea

treatment. Animal Feed Science and Technology 151: 291-298.

Valarini, M.J. and Possenti, R.A. (2004). Stem-nodulating Sesbania as a potential feed

supplement for ruminants. Tropical Science 44: 67–72.

Van Soest, P.J. (1994). The nutritional ecology of the ruminant, 2nd edition. Cornell

University Press. Ithaca, NY. 476 pp.

Van Soest, P.J. (2006). Rice straw, the role of silica and treatments to improve quality.

Animal Feed Science and Technology 130: 137-171.

Vares, T., Niemenmaa, O. and Hatakka, A. (1994). Secretion of ligninolytic enzymes

and mineralization of 14c-ring-labelled synthetic lignin by three Phlebia

tremellosa strains. Applied and Environmental Microbiology 60: 569-57.

Villas-Boˆas, S.G., Esposito, E. and Mitchell, D.A. (2002) Microbial conversion of

lignocellulosic residues for production of animal feeds. Animal Feed Science and

Technology 98: 1–12.


175

Voragen, A.G.J., Beldman, G. and Schols, H. (2001). Chemistry and enzymology of

pectins. In: Advanced Dietary Fibre Technology, B.V. McCleary and L. Prosky

(eds), , (Blackwell Science, Oxford, UK, pp 379-398.

Waldrop, M.P., Balser, T.C. and Firestone, M.K. (2000). Linking microbial community

composition to function in a tropical soil. Soil Biology and Biochemistry 32:

1837–1846.

Wariishi, H., Akileswaran, L. and Gold, M.H. (1988). Manganese peroxidase from the

basidiomycete Phanerochaete chrysosporium: spectral characterization of the

oxidized state and the catalytic cycle. Biochemistry 27: 5365-5370.

Wariishi, H., Dunford, H.B., MacDonald, I.D. and Gold, M.H. (1989). Manganese

peroxidase from lignin degrading basidiomycete Phanerochaete chrysosporium:

transient-state kinetics and reaction mechanism. Journal of Biological Chemistry

264: 3335-3340.

Watanabe, T. (2003). Analysis of native bonds between lignin and carbohydrate by

specific chemical reactions, In: Association between lignin and carbohydrates in

wood and other plant tissue. T. Koshijima and T. Watanabe (Eds). Springer

Verlag, Heidelberg, Germany, pp 91-130.

Weiss, W.P. (2005). Antioxidants nutrients, cow health and milk quality. In: Dairy

cattle nutritionworkshop,DepartmentofDairyand Animal Sciences, Penn State,

pp.11-18.

Wejse, P.L., Ingvorsen, K. and Mortensen, K.K., (2003). Xylanase production by a

novel halophilic bacterium increased 20-fold by response surface methodology.

Enzyme and Microbial Technology 32: 721–727.

Whalley, W.R., Watts, W.C., Gregory, A.S., cMooney, S.J., Clark, L.J. and Whitmore,

A.P. (2008). The effect of soil strength on the yield of paddy. Plant Soil 306: 237–

247.

Williams, B.A., Chuzaemi, S., Soebarinoto,cc J., Bruchem, V., Boer, H., and

Tamminga, S. (1996). A comparison of ten rice-straw varieties grown at two

different altitudes during a wet and a dry season, using the in vitro cumulative gas

production technique. Animal Feed Science and Technology 57: 183-194.

Wirsenius, S. (2003). Efficiencies and biomass appropriation of food commodities on

global and regional levels. Agricultural Systems 77: 219-255.


176

Xu, C. Ma, F. Zhang, X. Chen S. (2010). Biological pretreatment of corn stover by

Irpex lacteus for enzymatic hydrolysis. Journal of Agriculture and Food

Chemistry 58: 10893–10898.

Yang, H.H., Effland, M.J. and Kirk, T.K. (1980). Factors influencing fungal degradation

of lignin in a representative lignocellulosic, thermomechanical pulp.

Biotechnology and Bioengineering 22: 65-77.

Yang, W.Z., Beauchemin, K.A. and Rode, L.M.A. (2000). Comparison of methods of

adding fibrolytic enzymes to lactating cow diets. Journal of Dairy Sciences 83:

2512–2520.

Yang, X., Ma, F., Zeng, Y., Yu, H., Xu, C. and Zhang, X. (2010). Structure alteration of

lignin in corn stover degraded by white-rot fungus Irpex lacteus CD2.

International Biodeterioration and Biodegradation 64: 119-123.

Yayneshet, T. Eik, L.O. and Moe, S.R. (2009). Seasonal variations in the chemical

composition and dry matter degradability of exclosure forages in the semi-arid

region of northern Ethiopia. Animal Feed Science and Technology 148: 12-33.

Yildirim, N. and Yildiz, A. (2009). The effect of Pleurotus eryngii (DC. ex Fr.) Quel. on

rice bran and wheat straw under the solid-state bioconversion for ruminant feed.

Journal of Animal and Plant Sciences 5: 475 – 482.

Yin, J., Tomycz, L., Bonner, G. and Wang, D.I.C. (2002). A simple and rapid assay of

collagen-like polymer in crude lysate from Escherichia coli. Journal of

Microbiological Methods 49: 321–323.

Yoshida, H. (1883). Chemistry of lacquer (Urushi). Part I. Communication from the

Chemical Society of Tokio. Journal of the Chemical Society, Perkin Transactions

43: 472–486.

Yu, H., Du, W., Zhang, J., Ma, F., Zhang, X., Zhong, W. (2010). Fungal treatment of

cornstalks enhances the delignification and xylan loss during mild alkaline

pretreatment and enzymatic digestibility of glucan. Bioresource Technology101:

6728-6734.

Yu, M., Zeng, G., Chen, Y., Yu, H., Huang, D. and Tang, L. (2009) Influence of

Phanerochaete chrysosporium on microbial communities and lignocellulose

degradation during solid state fermentation of rice straw. Process Biochemistry

44: 17–22.


177

Yu, P., McKinnon, J.J. and Christensen, D.A. (2005). Improving the nutritional value of

oat hulls for ruminant animals with pretreatment of a multienzyme cocktail: In

vitro studies. Journal of Animal Science 83: 1133–1141.

Zadrazil, F. (1977). The conversion of straw into feed by basidiomycetes, European

Journal of Applied Microbiology 4: 273-281.

Zadrazil, F. (2000). Is the conversion of lignocellulose into feed with white rot fungi

realizable? Practical problems of scale up and technology transfer. Mushroom

Science 15: 919-928.

Zadrazil, F. and Brunnert, H. (1980). The influence of ammonium nitrate

supplementation on degradation and in vitro digestibility of straw colonized by

higher fungi. European Journal of Applied Microbiology and Biotechnology 9:

37-44.

Zadrazil, F. and Isikhuemhen, O. (1997). Solid state fermentation of lignocellulosics

into animal feed with white rot fungi. In: Advances in Solid State Fermentation S.

Roussos, B.K. Lonsane, M. Raimbault and G. Viniegra-Gonzalez (Eds), Kluwer

Academic Publishers, Dordrecht, The Netherlands, pp 23–38.

Zhao, G.R., Xiang, Z.J., Ye, T.X., Yaun, J.Y. and Guo, X.Z. (2006). Antioxidant

activities of Salvia miltiorrhiza and Panax notoginseng. Food Chemistry 99: 767-

774.

Zheng, Y., Pan, Z. and Zhang, R. (2009). Overview of biomass pretreatment for

cellulosic ethanol production. International Journal of Agriculture and Biological

Engineering 2: 51-68.

Zödl, B., Zeiner, M. Paukovits, P., Steffan, I., Marktl, W. and Ekmekcioglu, C. (2005).

Iron Uptake and Toxicity in Caco-2 Cells. Microchemical Journal 79: 393-397.

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