next frontier & a mine of opportunities in math & biology · introduction math &...
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Introduction Math & Biology Plan Examples
Next Frontier & a Mine of Opportunities inMath & Biology
Hassan M Fathallah-Shaykh
Departments of Neurology and Mathematics,University of Alabama at Birmingham
April 6, 2014
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 2: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/2.jpg)
Introduction Math & Biology Plan Examples
Thank you
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 3: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/3.jpg)
Introduction Math & Biology Plan Examples
Independent Disciplines/Schools/Departments
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 4: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/4.jpg)
Introduction Math & Biology Plan Examples
Statistics Close Relationship
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 5: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/5.jpg)
Introduction Math & Biology Plan Examples
Overview
Mathematical Biology:
Why math for biology/medicine?
Why biology/medicine for math?
Examples.
Suggested Plan.
Concluding Remarks.
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 6: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/6.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Short Answer
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 7: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/7.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
JAK/STAT Signalling pathway
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 8: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/8.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
JAK/STAT Signalling pathway
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 9: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/9.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Signalling in Alzheimer’s Disease
Mizuno et al. BMC Systems Biology 2012, 6:52.Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 10: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/10.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Targeting & Time-Varying Networks
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 11: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/11.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Cells Migrate
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 12: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/12.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Cells Communicate
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 13: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/13.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Cells Interact
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 14: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/14.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Human Brain Project: Neuron
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 15: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/15.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Human Brain Project: Synapses
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 16: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/16.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Human Brain Project: Supercomputer
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 17: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/17.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Remarks
Is it Hopeless?
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 18: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/18.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Remarks
It is awesome,
the Next Frontier and a mine of opportunities.
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 19: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/19.jpg)
Introduction Math & Biology Plan Examples Math for Biology Molecular Networks Motility Communication Brain Project Biology to Math
Remarks
Mathematics deals with time-varying systems(dynamical), and large dimensional and infinite objects.
Problems from biology/medicine are novel inmathematics.
Problems from biology/medicine require closecollaboration within various disciplines in mathematicsand with biology.
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 20: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/20.jpg)
Introduction Math & Biology Plan Examples
Suggested Plan
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 21: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/21.jpg)
Introduction Math & Biology Plan Examples
Network Model
Question: paradoxical effects of Clockwork Orange(Fathallah-Shaykh HM et al., Biophys J, 2009).
Model predicts jitter and provides evidence of thechaotic dynamics of the Drosophila circadian clock(Fathallah-Shaykh HM, PlosOne 2010).
Model gives a counter-example of the Kaplan-Yorkeconjecture (Fathallah-Shaykh HM, Fractals, 2011).
Model inspires theoretical results on matrices and thedynamics of networks (Fathallah-Shaykh et al., in review).
Model application: POD for estimating the parametersof oscillating networks (Rehm et al., JCAM, 2013).
Model application: discovering the time-varyingmolecular networks of the Drosophila embryo (Khan etal., EURASIP J Bioinform Syst Biol. 2014).
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 22: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/22.jpg)
Introduction Math & Biology Plan Examples
Network Model
Question: paradoxical effects of Clockwork Orange(Fathallah-Shaykh HM et al., Biophys J, 2009).
Model predicts jitter and provides evidence of thechaotic dynamics of the Drosophila circadian clock(Fathallah-Shaykh HM, PlosOne 2010).
Model gives a counter-example of the Kaplan-Yorkeconjecture (Fathallah-Shaykh HM, Fractals, 2011).
Model inspires theoretical results on matrices and thedynamics of networks (Fathallah-Shaykh et al., in review).
Model application: POD for estimating the parametersof oscillating networks (Rehm et al., JCAM, 2013).
Model application: discovering the time-varyingmolecular networks of the Drosophila embryo (Khan etal., EURASIP J Bioinform Syst Biol. 2014).
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 23: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/23.jpg)
Introduction Math & Biology Plan Examples
Network Model
Question: paradoxical effects of Clockwork Orange(Fathallah-Shaykh HM et al., Biophys J, 2009).
Model predicts jitter and provides evidence of thechaotic dynamics of the Drosophila circadian clock(Fathallah-Shaykh HM, PlosOne 2010).
Model gives a counter-example of the Kaplan-Yorkeconjecture (Fathallah-Shaykh HM, Fractals, 2011).
Model inspires theoretical results on matrices and thedynamics of networks (Fathallah-Shaykh et al., in review).
Model application: POD for estimating the parametersof oscillating networks (Rehm et al., JCAM, 2013).
Model application: discovering the time-varyingmolecular networks of the Drosophila embryo (Khan etal., EURASIP J Bioinform Syst Biol. 2014).
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 24: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/24.jpg)
Introduction Math & Biology Plan Examples
Network Model
Question: paradoxical effects of Clockwork Orange(Fathallah-Shaykh HM et al., Biophys J, 2009).
Model predicts jitter and provides evidence of thechaotic dynamics of the Drosophila circadian clock(Fathallah-Shaykh HM, PlosOne 2010).
Model gives a counter-example of the Kaplan-Yorkeconjecture (Fathallah-Shaykh HM, Fractals, 2011).
Model inspires theoretical results on matrices and thedynamics of networks (Fathallah-Shaykh et al., in review).
Model application: POD for estimating the parametersof oscillating networks (Rehm et al., JCAM, 2013).
Model application: discovering the time-varyingmolecular networks of the Drosophila embryo (Khan etal., EURASIP J Bioinform Syst Biol. 2014).
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 25: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/25.jpg)
Introduction Math & Biology Plan Examples
Network Model
Question: paradoxical effects of Clockwork Orange(Fathallah-Shaykh HM et al., Biophys J, 2009).
Model predicts jitter and provides evidence of thechaotic dynamics of the Drosophila circadian clock(Fathallah-Shaykh HM, PlosOne 2010).
Model gives a counter-example of the Kaplan-Yorkeconjecture (Fathallah-Shaykh HM, Fractals, 2011).
Model inspires theoretical results on matrices and thedynamics of networks (Fathallah-Shaykh et al., in review).
Model application: POD for estimating the parametersof oscillating networks (Rehm et al., JCAM, 2013).
Model application: discovering the time-varyingmolecular networks of the Drosophila embryo (Khan etal., EURASIP J Bioinform Syst Biol. 2014).
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 26: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/26.jpg)
Introduction Math & Biology Plan Examples
Network Model
Question: paradoxical effects of Clockwork Orange(Fathallah-Shaykh HM et al., Biophys J, 2009).
Model predicts jitter and provides evidence of thechaotic dynamics of the Drosophila circadian clock(Fathallah-Shaykh HM, PlosOne 2010).
Model gives a counter-example of the Kaplan-Yorkeconjecture (Fathallah-Shaykh HM, Fractals, 2011).
Model inspires theoretical results on matrices and thedynamics of networks (Fathallah-Shaykh et al., in review).
Model application: POD for estimating the parametersof oscillating networks (Rehm et al., JCAM, 2013).
Model application: discovering the time-varyingmolecular networks of the Drosophila embryo (Khan etal., EURASIP J Bioinform Syst Biol. 2014).
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 27: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/27.jpg)
Introduction Math & Biology Plan Examples
Suggested Resolution of Paradox
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 28: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/28.jpg)
Introduction Math & Biology Plan Examples
Jitter and Chaotic Dynamics
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 29: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/29.jpg)
Introduction Math & Biology Plan Examples
Counter-Example of The Kaplan-Yorke Conjecture
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 30: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/30.jpg)
Introduction Math & Biology Plan Examples
Time-Varying Networks
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 31: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/31.jpg)
Introduction Math & Biology Plan Examples
Some Theoretical Results
Theorem
Consider a system Sn and assume that A is LDS andxi(t0) ∈
∏ni=1(−γi, µi),∀i, then
1 σ is GAS if σ ∈∏n
i=1[−γi, µi],2 a critical point on the boundary is GAS if σ /∈
∏ni=1[−γi, µi].
Theorem
Consider a complete network with three vertices, which includes atleast one positive edge. If A ∈ P and A is not D-stable, then thesystem admits a nonconvergent bounded trajectory.
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 32: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/32.jpg)
Introduction Math & Biology Plan Examples
Suggested Plan
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 33: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/33.jpg)
Introduction Math & Biology Plan Examples
Collaborators and Students
Nidhal Bouaynaya
Uppender Manne
Jerry Bona
Sebastian Kadener
Elizabeth Scribner
Amanda Rehm
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 34: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/34.jpg)
Introduction Math & Biology Plan Examples
Grant Support/Funding
NSF/NIGMS
NSF
NIH
Societies
Burroughs-Wellcome: Education
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology
![Page 35: Next Frontier & a Mine of Opportunities in Math & Biology · Introduction Math & Biology Plan Examples Network Model Question: paradoxical e ects of Clockwork Orange (Fathallah-Shaykh](https://reader033.vdocuments.mx/reader033/viewer/2022060216/5f061fd57e708231d4166985/html5/thumbnails/35.jpg)
Introduction Math & Biology Plan Examples
Tomorrow’s Talks
Philip Maini: ”Modelling Collective Cell Motion in Biology.”CH274, 8:00 am.
Jim Keener: ”Using Mathematics to Understand BiologicalProcesses”. BEC 256 School of Engineering, 11:00 am.
Emmanuele DiBenedetto: ”On the Local Behavior ofNon-Negative Solutions to a Logarithmically SingularEquation.” CH452, 2:30 pm.
Hassan M Fathallah-Shaykh Next Frontier & a Mine of Opportunities in Math & Biology