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Format of the review article: - A word limit of 5,000 words; - Less than 80 references; - No strict limit to the number of tables and figures (8-10 recommended); - An unstructured abstract of ≤ 250 words; - The maximum number of authors: 6 Genetics and Molecular Diagnostics in Retinoblastoma - An Update Authors: Sameh E. Soliman, MD Chengyue Zhang, MD . Hilary Racher, PhD Heather MacDonald Brenda L. Gallie. Affiliations: Department of Ophthalmology and Vision Sciences, University of Toronto, Ontario, Canada

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Page 1: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

Format of the review article:

- A word limit of 5,000 words;

- Less than 80 references;

- No strict limit to the number of tables and figures (8-10 recommended);

- An unstructured abstract of ≤ 250 words;

- The maximum number of authors: 6

Genetics and Molecular Diagnostics in

Retinoblastoma - An Update

Authors:

Sameh E. Soliman, MD

Chengyue Zhang, MD.

Hilary Racher, PhD

Heather MacDonald

Brenda L. Gallie.

Affiliations:

Department of Ophthalmology and Vision Sciences, University of Toronto, Ontario, Canada

Department of Ophthalmology, Faculty of Medicine, University of Alexandria, Alexandria, Egypt.

Department of Ophthalmology, Beijing Children’s Hospital, Capital Medical University.

Impact Genetics, Bowmanville, Ontario.

Corresponding author:

Sameh Gaballah, 12/29/16,
Organizing Text: Number the pages of the manuscript consecutively, beginning with the introduction as page 1. The text of an original article should not exceed 4,000 words with up to 8 images and tables and 50 references while that of a review article should not exceed 6,000 words with up to 8 images and tables and 100 references. The text of an annual review should not exceed 15,000 words with up to 200 references.
Sameh Gaballah, 12/29/16,
The authors arrangement is to be decided by Hilary/Brenda. We are only entering names and affiliations. The current order is irrelevant.
Sameh Gaballah, 12/29/16,
Title page: Include on the title page (a) complete manuscript title; (b) authors’ full names, highest academic degrees, and affiliations; (c) name and address for correspondence, including fax number, telephone number and email address; (d) address for reprints if different from that of corresponding author; and (e) sources of support that require acknowledgement.
Page 2: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

We confirm that this manuscript has not been and will not be submitted elsewhere for publication, and

all coauthors have read the final manuscript within their respective areas of expertise and participated

sufficiently in the review to take responsibility for it and accept its conclusions. HR is a paid employee

and BG is an unpaid medical advisor at Impact Genetics. No other authors have any financial/conflicting

interests to disclose.

This paper received no specific grant from any funding agency in the public, commercial or not-for-

profit sectors.

2

Page 3: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

Unstructured abstract

Abstract: mmmmmmm

Key Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing,

3

Sameh Gaballah, 12/29/16,
Review articles should emphasize new developments and areas of controversy in clinical or laboratory ophthalmology. An unstructured abstract of no more than 250 words should be submitted on a separate page.
Page 4: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

INTRODUCTION

Retinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1

It is considered the prototype of genetic cancers.26,000 live births, translating to about 8,000 new cases

per year worldwide.1,3 Understanding retinoblastoma genetics is crucial in multiple aspects as clinical

presentation, choice of treatment modality and follow-up for both the child and his family. Multiple

reviews described the genetics of retinoblastoma in depth. In this review we will try to address most of

the updates on the genetic aspect of retinoblastoma in a clinical scenario setting that might simplify this

aspects to ophthalmologists all over the world.

Case Scenario: a 2 years old female child presented with left leukocorea (white pupil). The family

noticed the white pupil at a family photograph 5 days ago. They sought medical advise to their family

physician who suspected retinoblastoma and referred them urgently to the pediatric ophthalmologist. The

family history is irrelevant and the mother is 33 weeks pregnant. The child was extremely uncooperative

but the ophthalmologist was able to visualize a white retinal mass in the left eye. He couldn’t examine

except the inferior retina, an intact optic and fovea in the right eye that was apparently free. The diagnosis

of retinoblastoma was made and the following discussion took place between the ophthalmologist and the

family.

Q1: Father: What is retinoblastoma?

Retinoblastoma is a malignant tumor that arises from a developing retinal cell. The exact cell of origin is

unknown but there are many theories suggesting either a photoreceptor cell or an inner nuclear layer cell

origin. The visualization of early tumors by optical coherence tomography supports the later but not yet

proven. Retinoblastoma can affect one (unilateral) or both eyes (bilateral) and in rare instances (<1%)

might be associated with a brain tumor in the pineal region regardless of the laterality of ocular

involvement.

4

Page 5: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

Q2: Father: why it is presenting in such a young age?

Retinoblastoma arises from developing cells that are present in the retinae of young children from the

intrauterine life up to 7 years of age. It is believed that all retinal cells are developed by this age. Rarely,

retinoblastoma develops in older ages.

Q3: Mother: What caused retinoblastoma?

Tumors are initiated by biallelic mutation of the retinoblastoma tumor suppressor gene (RB1) in a

precursor retinal cell. The first RB1 mutation is present in constitutional cells in nearly 50% of patients,

who are thereby predisposed to developing retinoblastoma after the second RB1 allele is damaged in a

somatic cell.1 The RB1 gene, located on chromosom13q14, encodes the RB protein (pRB), an important

cell cycle regulator and the first tumor suppressor gene discovered.4 After a cell completes mitosis, the

pRB protein is dephosphorylated, permitting it to bind to the promoter region of the E2F transcription

factor gene, thereby repressing transcription and inhibiting the progression of the cell cycle from G1 to S

phase.5-7 In order for the cell to enter S phase, cyclin-dependent kinases phosphorylate RB, which

removes the ability of pRB to bind to the E2F gene promoter.8 pRB functions to regulate proliferation in

most cell types.6 Often, loss of RB1 is compensated by increased expression of its related proteins,

however, in certain susceptible cells, such as the retinal cone cell precursors, compensatory mechanisms

are not sufficient and tumorigenesis is initiated.9

Q4: What causes retinoblastoma to be unilateral versus bilateral?

In most cases, retinoblastoma develops when both copies of the RB1 gene are inactivated. This

concept was first formulated in 1971, when Knudson used retinoblastoma as the prototypic cancer to

derive the two-hit hypothesis.10 In heritable retinoblastoma, the first mutational event is inherited via the

germinal cells, while the second event occurs in the somatic cells. In non-heritable retinoblastoma, both

mutation events occur in the somatic cells. Heritable retinoblastoma encompasses 45% of all reported

cases.11-13 The clinical presentation of heritable retinoblastoma consists of 80% bilateral and 15-18%

5

Sameh Gaballah, 12/29/16,
-?A and B pockets-Also describe the role in genomic instability (Demaris. Rushlow)
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unilateral.1 In non-heritable retinoblastoma the majority (98%) of cases have somatic biallelic RB1 loss in

the tumor, while the remaining 2% have no mutation in either copy of RB1 but instead have somatic

amplification of the MYCN oncogene.14

Q5: Mother: What caused these mutations? Did I cause them?

There are many causes in the environment that can cause this including cosmic rays, X-rays, DNA

viruses, UV irradiation and irradiation. This is sporadic and cannot be anticipated or prevented. There are

many ways in which the function of the pRB is impaired including point mutations, small and large

deletions, promotor methylation and chromothripsis.15,16 The majority of RB1 mutations are de novo,

unique to a specific patient or family, however, there are some known recurrent mutations found across

many unrelated individuals. One subset of recurrent mutations involve 11 CpG sites, which make up

~22% of all RB1 mutations.17 The high recurrence of nonsense mutations at these sites is due to the

hypermutabilty and subsequent deamination of 5-methylcytosine.18

The origin of a de novo RB1 mutation can arise either pre- or post-conception. Most often, pre-

conception mutagenesis occurs during spermatogenesis.19,20 Furthermore, advanced paternal age has been

shown to increase risk for retinoblastoma.21 This might be due to the larger number of cell divisions

during spermatogenesis than oogenesis or the increased rate for base substitution errors in aging men

compared to women. In cases of pre-conception mutagenesis, the proband carries the de novo RB1

mutation in every cell within their body and typically presents with bilateral retinoblastoma. In contrast,

post-conception RB1 mutagenesis occurs during embryogenesis. Depending on the embryological stage

of development, a few or numerous tissues may be mosaic for the RB1 mutation. If the mutational event

occurs during retinal development, the presentation is often unilateral retinoblastoma.1

Q6: Father: So, only RB1 mutation is sufficient for retinoblastoma to develop?

6

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Both RB1 mutations are essential but insufficient to develop retinoblastoma evidenced by biallelic RB1

loss in the benign retinoma;22.suggesting more genetic or epigenetic changes for malignant

transformation.

In a small subset (2%) of unilateral patients, no RB1 mutation is identified. Instead, striking amplification

(28-121 copies) of the MYCN oncogene is detected.14 Patients with RB1+/+ MYCN are clinically distinct

from RB-/- patients, showing much younger age at diagnosis, distinct histological features and larger,

more invasive tumors. In addition to loss of RB1 or MYCN amplification, specific somatic copy number

alterations commonly occur in the progression of the retinoblastoma. Commonly seen are gains in 1q32,

2p24, 6p22 and losses at 13q and 16q22-24.23 These regions contain important oncogenes (MDM4,

KIF14, MYCN, DEK and E2F3) and tumor suppressor genes (CDH11), thought to act as drivers

promoting the growth of the cancer.24

Other less common alterations that have been identified in retinoblastoma tumors include differential

expression of some microRNAs25 and recurrent single nucleotide variants/insertion-deletions in the genes

BCOR and CREBBP.26 In comparison to the genomic landscape of other cancers, retinoblastoma is one of

the least mutated.26

Q7: What is the retinoma that you mentioned and how does it differ from retinoblastoma?

Retinoma is a premalignant precursor with characteristic clinical features: translucent white mass,

reactive retinal pigment epithelial growth and calcific foci.27 Pathology of retinoma reveals fleurettes

structures that are not proliferative. Genetic analysis of retinoma and adjacent normal retina and

retinoblastoma shows loss of both RB1 alleles, and early genomic copy number changes that are

amplified further in the adjacent retinoblastoma.22 It can transform to retinoblastoma even after many

years of stability.28

Retinoblastoma starts as a rounded white retinal mass that gradually increases in size. Centrifugal tumor

growth results in small tumors being round; more extensive growth produces lobular growth, likely

7

Sameh Gaballah, 12/29/16,
Hilary, please write a sentence to describe the epigenetic changes in brief.
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related to genomic changes in single (clonal) cells, that provide a proliferative advantage.29,30 Tumor seeds

float free of the main tumor into the subretinal space or the vitreous cavity as a result of poor cohesive

forces between tumor cells, appearing as dust, spheres or tumor clouds.31 Advanced vitreous tumor seeds

can migrate to the anterior chamber producing a pseudo-hypopyon. Enlarging tumor can push the iris lens

diaphragm forward causing angle closure glaucoma. Rapid necrosis of tumor can cause an aseptic orbital

inflammatory reaction resembling orbital cellulitis, sometimes showing central retinal artery

occlusion.29,30,32 Untreated, retinoblastoma spreads into the optic nerve and brain, or hematogenous spread

occurs through choroid, particularly to grow in bone marrow. Direct tumor growth through the sclera can

present as orbital extension and proptosis.

Q8: Do all affected individuals with RB1 mutations develop retinoblastoma?

In heritable retinoblastoma, each offspring of a patient has a 50% risk of inheriting the RB1

pathogenic change. Typically, nonsense and frame-shift germline mutations, which lead to absence of

RB1 expression or truncated dysfunctional RB protein, show nearly complete (90%) penetrance. Often

the second mutational event in the retinal cell is loss of the second RB1 allele (LOH, loss of

heterozygosity). In these families the presentation is typically unilateral multifocal or bilateral

retinoblastoma. In a smaller subset of hereditary retinoblastoma, reduced expressivity and reduced

penetrance is observed. In these families, when retinoblastoma develops, it is often late onset and less

severe, presenting as unilateral, unifocal (reduced expressivity) and in some carrier family member

retinoblastoma never develops (reduced penetrance). The types of reported RB1 mutations that result in

reduced expressivity or penetrance are diverse. Many consist of mutations that reduced RB1 protein

expression. Examples include, (1) mutations in exons 1 and 2,33 (2) mutations in exons 26 and 27,34 (3)

intronic mutations35,36 and (4) missense mutations.37,38 In addition, large deletions encompassing RB1 gene

and MED1 gene cause reduced expressivity/penetrance.39,40 Dehainault et al showed that RB1-/- cells

cannot survive in the absence of MED4. This can explain why patients with 13q14 deletion syndrome

more often have unilateral tumors, in comparison to patients with gross deletions with one breakpoint in

8

Sameh Gaballah, 12/29/16,
Can we delete unilateral?
Page 9: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

the RB1 gene whom typically present with bilateral disease.41-43 The severity of risk can be evaluated

through the disease-eye-ratio (DER) calculated by taking the number of eyes affected with tumors divided

by the total number of eyes of carriers within the family.44

In some instances of hereditable reduced expressivity/penetrance retinoblastoma, the parental origin

impacts whether or not an individual develops retinoblastoma and subsequently whether their carrier

offspring are at risk to develop retinoblastoma, a phenomenon termed the parent-of-origin effect.45-47 Eloy

et al47 proposed a potential molecular mechanism to explain the parent-of-origin effect. Using the

c.1981C>T (p.Arg661Trp) reduced penetrance/expressivity missense mutation, the researchers discovered

that differential methylation of the intron 2 CpG85 skews RB1 expression in favor of the maternal allele.

In other words, when the p.Arg661Trp allele is maternally inherited there is sufficient tumor suppressor

activity to prevent pRB development and 90.3% of carriers remain unaffected. However, when the allele

is paternally transmitted, very little RB1 is expressed, leading to haploinsufficiency and pRB development

in 67.5% of cases. A similar inheritance pattern was also reported for intron 6 c.607+1G>T substitution.45

Q9: Mother: could we have discovered it earlier?

Leukocorea (white pupil) is main clinical presentation usually detected by parents either directly or in

photographs (photo-leukocorea). Strabismus due early macular involvement is the second most

common.32 In developing countries, buphthalmos and proptosis due to advanced and extraocular disease

respectively represents a higher percentage.48 Less common presentations include; heterochromia irides,

neovascular glaucoma, vitreous hemorrhage, hypopyon or aseptic orbital cellulitis.32 Retinoblastoma

(unilateral or bilateral) might be associated with a brain tumor in the pineal, suprasellar or parasellar

regions (Trilateral retinoblastoma)49,50 that starts early; with the median age of onset 17 months after

retinoblastoma is diagnosed and before the age of 5 years. Retinoblastoma might present in a syndromic

form (13q deletion syndrome) associated with some facial features as high and broad forehead, thick and

everted ear lobes, short nose, prominent philtrum and thick everted lower lip, bulbous tip of the

9

Sameh Soliman, 12/29/16,
I would recommend a figure to show clinical features. BG: NO, this will be elsewhere in the revie issue. We chould stick to genetics.BG: not sure, this is one article in a review issue where we are assigned the genetics…..
Page 10: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

noseassociated with various degrees of hypotonea and mental retardation.51-53 The main differential

diagnosis includes Coats’ disease, persistent hyperplastic primary vitreous and ocular toxicariasis.32

Q10: What are the treatments and what govern the choice?

Treatment and prognosis depend on the stage of disease at initial presentation. Factors predictive of

outcomes include size, location of tumor origin, extent of subretinal fluid, presence of tumor seeds and

the presence of high risk features on pathology.54 Multiple staging systems have predicted likelihood to

salvage an eye without using radiation therapy; the International Intraocular Retinoblastoma

Classification (IIRC)29 has been recently the most reliable, but published evidence is confusing because

significantly different versions have emerged.1 The 2017 TNMH classification is based on international

consensus and evidence from an international survey of 1728 eyes, with algorithms evaluating initial

features and outcomes by 5 different eye staging systems.54 (Table X) Retinoblastoma is the first cancer in

which staging recognizes the impact of genetic status on outcomes: presence of a positive family history,

bilateral or trilateral disease or high sensitivity positive RB1mutation testing, is H1; without these features

or testing of blood, HX; and H0 for those relatives who are shown to not carry the proband’s specific RB1

mutation.54 We propose H0* for patients with 2 RB1 mutant alleles in blood that are not detectable in

blood, reducing risk of a heritable RB1 mutation to <1%.

Multiple treatments are now available and the choice depends on the laterality of disease and the

grouping of the tumor. Chemotherapy (systemic or intraarterial chemotherapy) to reduce the size of the

tumor followed by consolidation focal therapies (Laser therapy or cryotherapy) is the main stay of

treatment. Enucleation for eyes with advanced tumors or in unilateral disease where the other eye is

normal is more appropriate and definitive. Other therapies include; intravitreal chemotherapy for vitreous

disease, plaque radiotherapy or periocular chemotherapy. External beam radiation therapy has extremely

limited indications nowadays due to its extensive cancer risks and complications.1

Q11: Is retinoblastoma lethal?

10

Sameh Soliman, 12/29/16,
Table attached
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Asia and Africa have the highest mortality, with >70% of affected children dying of retinoblastoma,

compared with <5% in developed countries.48,55 Delayed diagnosis and treatment due to lack of

retinoblastoma knowledge by ophthalmologists and parents, socioeconomic56 and cultural factors are

major causes of high mortality. Broad understanding of retinoblastoma genetics and genetic counseling

can contribute to reducing mortality from retinoblastoma.

Germline retinoblastoma carry the risk of development of second primary cancers, most commonly

osteosarcoma and fibrosarcoma. Sometimes it might be confused with metastatic retinoblastoma. Fine

needle aspiration cytopathology has minimal role in differentiation as both metastasis and second cancers

appear as blue round cell tumors. molecular analysis might help to differentiate.57

Q12: How can we test for retinoblastoma?

The most optimal strategy for retinoblastoma molecular genetic testing is guided by the patient’s

tumor presentation. If the patient is bilaterally affected, the probability of finding a germline mutation in

the RB1 gene is high (example - 97% detection rate in comprehensive laboratory). For this reason, the

most optimal strategy for testing bilateral patients involves first testing genomic DNA extracted from

peripheral blood lymphocytes (PBL). In rare instances of bilateral retinoblastoma, the predisposing RB1

mutation has occurred sometime during embryonal development. In these cases, the RB1 mutation may

only be present in some cells and may not be detected in DNA from PBL. Therefore, in the event that no

mutation is identified in the blood of a bilaterally affected patient, DNA from tumor should be

investigated.58

In contrast, given that approximately 15% of unilateral patients carry a germline mutation, the most

optimal strategy is to first test DNA extracted from a tumor sample. Upon identification of the tumor

mutations, targeted molecular analysis can be performed on DNA from PBL to determine if the mutation

is present is the patient’s germline. When only the tumor is found to carry the RB1 mutations, this result

dramatically reduces the risk of recurrence in siblings and cousins. In addition, this targeted approach can

11

Sameh Gaballah, 12/29/16,
I would remove eye salvage because in developing countries the concept of eye salvage before mortality should be changed. I prefer to speak on mortality only as the paragraph started.
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allow for a more sensitive assessment of the PBL DNA, which can be useful in the detection of low level

mosaic mutations, more common in unilateral cases.58

Sample preparation impacts the quality of DNA. For best results, fresh or frozen tumor samples

should be collected, as opposed to formalin fixed paraffin embedded tumors, in which DNA is often

highly degraded, making it often too fragmented for use in some molecular diagnostic methods. With

regards to genomic DNA from PBL, it is best to collect whole blood in EDTA or ACD, as these

anticoagulants have minimal impact on downstream molecular methods.59

Technologies and techniques: Given that there are many ways in which the RB1 gene can be mutated,

several molecular techniques are required to assess for the whole spectrum of oncogenic events.

DNA sequencing: Single nucleotide variants (SNVs) and small insertions/deletions can be identified

using DNA sequencing strategies including Sanger dideoxy-sequencing or massively parallel next-

generation sequencing (NGS) methods.60-62 While both strategies function to produce DNA sequences,

NGS has the added advantage of producing millions of DNA sequences in a single run, in contrast to one

sequence per reaction with Sanger. Deciding on which technology to use depends on the clinical question

being asked. When screening family members for a known sequencing-detectable RB1 mutation, targeted

Sanger sequencing is a more cost and time effective strategy. In contrast, NGS may be the most effective

screening strategy to investigate for an unknown de novo mutation in an affected proband. Another added

advantage to NGS is the ability to perform deep sequencing, which allows for a much lower limit of

detection (analytic sensitivity) for identify low level mosaic mutations in comparison to Sanger

sequencing.62

Copy number analysis: Large RB1 deletions or duplications that span whole exons or multiple exons

typically cannot be easily detected by DNA sequencing. Instead, techniques including multiplex ligation-

dependent probe amplification (MLPA), quantitative multiplex PCR (QM-PCR) or array comparative

genomic hybridization (aCGH) are often used to interrogate for large deletions (ex. 13q14 deletion

syndrome) and duplications. In addition, these techniques can also be used to identify other genomic

12

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copy number alterations seen in retinoblastoma tumors, such as MYCN amplification. Recently, new

developments in bioinformatics analysis have created ways in which NGS data can be interrogated for

copy number variants.61,63 While the data is promising; the current limitation of targeted NGS is that

capture efficiency is uneven, which reduces the sensitivity of detecting CNVs in comparison to

conventional methods.

Low-level mosaic detection: Somatic mosaicism can arise in either the presenting patient or their

parent. Detecting a mosaic mutation can be difficult depending on the individual’s level of mosaicism.

NGS can be used detect low-level mosaicism (see above). In addition, allele-specific PCR (AS-PCR) is

an another strategy that can be used in situations where the RB1 mutation is known.17 This strategy

involves the generation of a unique set of primers specific to the mutation of interest and can detect

mosaicism levels as low as 1%.

Microsatellite analysis: The second mutational event in the majority of retinoblastoma tumors

consists of loss of heterozygosity (LOH). LOH is common event in many cancers and is strongly

associated with loss of the wild-type allele in individuals with an inherited cancer predisposition

syndrome.64 Polymorphic microsatellite markers distributed throughout chromosome 13 can be used to

detect a change from a heterozygous state in blood compared to the homozygous state in a tumor with

LOH. Microsatellite marker analysis is also useful in identity testing and in determining the presence of

maternal cell contamination in prenatal diagnostic testing.

Methylation analysis: In addition to genetic changes, epigenetic changes have been recognized as

another mechanism of retinoblastoma development.65 Hypermethylation of the RB1 promoter CpG island

results in transcription inhibition of the RB1 gene and has been identified 10-12% of retinoblastoma

tumors.18,66 This epigenetic event primarily occurs somatically, however, rare instance of heritable

mutations in the RB1 promoter and translocations disrupting RB1 regulator sites have been reported to

also cause RB1 promoter hypermethylation.67

13

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RNA analysis: In rare instance, no RB1 mutation is identified in the coding, promoter or flanking

intronic sequence in blood from a bilateral patient. Conventional molecular methods do not interrogate

all RB1 intronic nucleotides due to the large amount of sequence and repetitive nature of intronic DNA.

However, deep intronic sequencing alterations have been identified to disrupt RB1 transcription in

patients with retinoblastoma. 68,69 In order to investigate for deep intronic changes, analysis of the RB1

transcript by reverse-transcriptase PCR (RT-PCR) is performed. RNA studies are also useful in clarifying

the pathogenicity of intronic sequencing alterations detected by conventional DNA sequencing.

68,69Alternatively, as sequencing costs continue to decrease; whole genome sequence (WGS) may become

the method of choice to uncover deep intronic changes.

Protein studies

Cytogenetic strategies: Karyotype, fluorescent in situ hybridization (FISH) or array comparative

genomic hybridization (aCGH) of peripheral blood lymphocytes can be used to identify large deletions

and rearrangements in patient’s suspected of 13q14 deletion syndrome.41,70 In parents of 13q14 deletion

patients, karyotype analysis can be used to assess for balanced translocations, which increases the risk of

recurrence in subsequent offspring.51

Q13: Are these tests available worldwide?

No, They are mainly present in developed countries. In China, many families with retinoblastoma

children do not understand the benefits of genetic testing and genetic counseling in treatment and follow-

up. Meanwhile, the health insurance can’t cover the cost for it. So all the obstacles mentioned above

result in the limited application of genetic testing and genetic counseling nationwide, which also lead to

the redundant economic burden on the affected families. The Chinese government started new policy that

allowed every family to have one more child nowadays. Therefore, genetic testing and genetic

counseling should be put into good use especially for the families carrying the germline RB1 mutation.

14

Sameh Gaballah, 12/29/16,
References Jeffrey.
Sameh Gaballah, 12/29/16,
Reference?
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In Egypt,71 Genetic testing for retinoblastoma is not available and genetic counseling is the only way for

addressing retinoblastoma genetics. This counseling is performed through ophthalmologists mainly with

defective training in this aspect. Genetic counseling was found to increase the level of knowledge

regarding familial retinoblastoma genetics but the proper translation of this knowledge into appropriate

screening action was deficient.71

Q14: What after finding the RB1 mutation?

Targeted familial testing1,58 is used to determine if a predisposing RB1 mutation has occurred de novo,

parental DNA from PBL is investigated. Even if neither parent is identified to be a carrier, recurrence

risk in siblings is still increased due to the risk of germline mosaicism. DNA from PBL for all siblings of

affected patients should be tested for the proband’s mutation. As well, DNA from PBL for children of all

affected patient’s should also be tested for the predisposing mutation.

If the proband’s mutation was identified to be mosaic (ie postzygotic in origin) in DNA from PBL,

parents and siblings of the proband are not at risk to carry the predisposing mutation. However, the

children of mosaic proband should be tested, as their risk of inheriting the predisposing RB1 mutation can

be as high as 50% depending on the mutation burden in the probands germline.

When a RB1 mutation has been identified in a family, The Known RB1 mutation of the proband can

be tested in his offspring. Couples may consider multiple options with respect to planning a pregnancy.

Genetic testing performed early in the course of the pregnancy is available in many countries around the

world. Two early procedures are available: 1) chorionic villus sampling (CVS) and 2) amniocentesis.

CVS is a test typically performed between 11-14 weeks gestation during which as sample of the placenta

is obtained either by transvaginal or transabdominal approach. Amniocentesis is a test performed after 16

weeks of gestation whereby as sample of the amniotic fluid is gathered with a transabdominal approach.

CVS has a procedure-associated risk of miscarriage of ~1%. Amniocentesis has a procedure-associated

risk of miscarriage between 0.1-0.5%. Though uncommon, there is a risk for maternal cell contamination

that occurs more frequently with CVS.72

15

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Genetic testing results can be used by the family and health care team to manage the pregnancy. If a

mutation is not identified, the pregnancy can proceed with no further intervention, as there is no increased

risk for retinoblastoma beyond the general population risk. If the mutation is identified, some couples

may consider deciding to stop the pregnancy; other couples will decide to continue with the pregnancy

and appropriate intervention, such as early delivery, will be put into place to improve outcomes.73

Some couples know that they wish to continue their pregnancy regardless of the genetic testing results

and are concerned by the risk of miscarriage associated with early invasive prenatal testing. Where

available, couples can also consider the option of late amniocentesis, performed between 30-34 weeks

gestation. When amniocentesis is performed late into the pregnancy, the key complication becomes early

delivery rather than miscarriage.72 The risk for procedure-associated significant preterm delivery is low

(<3%). Results of genetic testing will be available with enough time to plan for early delivery when a

mutation has been inherited.

In many countries around the world, the option for prenatal genetic testing is not available. Even

where available, some couples may elect to do no invasive testing during the course of the pregnancy.

For these conceptions, if the pregnancy is at 50% risk for inheriting a RB1 mutation, it is crucial that the

pregnancy does not go post-dates. Induction of labour should be seriously considered if natural delivery

has not occurred by the due date.58,73

Q15: Can we use the known mutation in other benefits?

Preconception testing

In some countries around the world, there is an in vitro fertilization option available to couples called

preimplantation genetic diagnosis (PGD).74-77 For PGD, a couple undergoes in vitro fertilization.

Conceptions are tested at an early stage of development (typically 8-cell) for the presence of the familial

mutation. Only those conceptions that do not carry the mutation will be used for fertilization. The

procedure is costly, ranging from $10,000-$15,000 per cycle. In some countries, there may be full or

16

Page 17: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

partial coverage of the costs associated with procedure. In addition to cost, couples must consider the

medical and time impact of undergoing in vitro fertilization. Couples also need to be aware that the full

medical implications of PGD are not yet understood; there is emerging evidence that there may be a low

risk for epigenetic changes in the conception as a result of the procedure. For couples that undergo PGD,

it is recommended that typical prenatal testing be pursued during the course of the pregnancy to confirm

the results.74-77

Molecular Screening for Retinoblastoma

This can be performed either prenatal or it can be performed at birth via umbilical cord blood

(postnatal screening). This will help either eliminate the 50% theoretical risk of the proband’s RB1

mutation heritability or confirm it into 100% risk. Both screening methods are effective in improving

visual outcome and eye salvage than non-screened children, However, prenatal screening allows for

planning for earlier delivery in positive children (late preterm/early term); this was shown to have less

number of tumors at birth (20% versus 50 %) with only 15 % visual threatening tumors in prenatatl

screening. Prenatal screening with early delivery showed less tumor and treatment burden with higher

treatment success, eye preservation and visual outcome.73

Q16: what is genetic counseling?

Genetic counseling is both a psychosocial and educational process for patients and their families with

the aim of helping families better adapt to the genetic risk, the genetic condition, and the process of

informed decision-making.78-80. Genetic testing is an integral component of genetic counseling that results

in more informed and precise genetic counseling. Concrete knowledge of the genetic test outcomes results

in specificity, reducing the need for other possible scenarios to be discussed with the family. This

enhances the educational component of genetic counseling and also provides further time for

psychosocial support to be provided to the family.

Q17: what are the risks for the relatives in the family?

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Q18: What are the long term risks for germ line RB1 mutation?

Genetic Counseling (Heather/Hilary)

Targeted familial testing/prenatal testing,

Surveillance for mets and second cancer

Benefits of genetic counseling (Table of risk% [skalet etc] [impact new data?] ie: siblings, offspring,

cousins, faroff relatives, stats below population risk]

with bilateral retinoblastoma at presentation are presumed to have heritable retinoblastoma and a RB1

mutation. Genetic testing provides more accurate information about the type of heritable retinoblastoma

and allows for straightforward testing to determine if additional family members are at risk. Through

genetic testing, a patient may be found to have a large deletion extending beyond the RB1 gene as part of

the 13q deletion spectrum. Individuals with 13q deletion syndrome are at risk for additional health

concerns requiring appropriate medical management and intervention. Results may reveal a mosaic

mutation which indicates that the mutation is definitively de novo; only the individual’s own children are

at risk and no further surveillance or genetic testing is needed for other family members. The results may

find a low-penetrance mutation which indicates the patient is at reduced risk to develop future tumours.

As genetic testing for retinoblastoma becomes more common place and data accumulate, surveillance of

the proband may one day be matched more precisely to the level of risk for new tumours for individuals

with low penetrance mutations.

Patients with unilateral retinoblastoma greatly benefit from genetic testing and counselling.

Approximately 15% of patients with unilateral retinoblastoma will be found to have heritable

retinoblastoma. Correctly identifying these patients can be lifesaving, for both the patients and their

families. Genetic testing companies focused on enhanced detection of RB1 mutations are able to identify

18

Sameh Gaballah, 12/28/16,
Is it presumed or sure?
Sameh Gaballah, 12/28/16,
I need a hint to references from here.
Sameh Gaballah, 12/28/16,
Reference?
Sameh Gaballah, 12/28/16,
I am finding difficulty citing here Hilary. Can you please give me any hints about the papers?
Sameh Gaballah, 12/28/16,
Hilary, please organize this part
Sameh Gaballah, 12/28/16,
-?A and B pockets-Also describe the role in genomic instability (Demaris. Rushlow)
Sameh Gaballah, 12/28/16,
I think this comes after Knudson hyposthesis and before the penetrance.
Hilary Racher, 12/28/16,
Moved to RB1 mutation section
Sameh Gaballah, 12/28/16,
Hilary, Can you please write a small paragraph explaining this with citations?
Gallie Brenda, 12/28/16,
BELONGS UP IN CLINICAL, not in genetics???
Sameh Gaballah, 12/28/16,
I preferred putting this here. Open for discussion.
Sameh Gaballah, 12/28/16,
Can we delete unilateral?
Sameh Gaballah, 12/28/16,
Please Hilary, can we rephrase to a simpler sentence?
Hilary Racher, 12/28/16,
Sameh – add section on retinoma
Hilary Racher, 12/28/16,
Sameh – define true H0 (*) vs most likely H0
Sameh Soliman, 12/28/16,
Table attached
Gallie Brenda, 12/28/16,
Sameh – integrate into the clinical section
Sameh Soliman, 12/28/16,
I would recommend a figure to show clinical features. BG: NO, this will be elsewhere in the revie issue. We chould stick to genetics.BG: not sure, this is one article in a review issue where we are assigned the genetics…..
Hilary Racher, 12/28/16,
Jeffry - Build more details from the Dimaris Nature Primer paper into this paragraph
Sameh Gaballah, 12/28/16,
I would remove eye salvage because in developing countries the concept of eye salvage before mortality should be changed. I prefer to speak on mortality only as the paragraph started.
Sameh Gaballah, 12/28/16,
I still think that this is an over-statement. I don’t think this number is true? What is your reference here Jeffrey??
Page 19: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

nearly 97% of all retinoblastoma mutations. Genetic testing of the patient’s blood is sensitive enough

when thorough methods are used that not finding a mutation results in a residual risk of heritable

retinoblastoma low enough to remove the need for examinations under anesthesia. This reduces the health

risk for the patient and the cost to the health care system. Testing is even more accurate when a tumour

sample is collected and tested when available. When mutations are identified in the tumour and are

negative in blood, the results can eliminate the need for screening of family members and provide

accurate testing for the patient’s future children. Whether or not a tumour sample is available, finding a

RB1 mutation in a patient’s blood confirms that this patient has heritable retinoblastoma. This patient now

benefits from increased surveillance designed to detect tumours at the earliest stages and awareness of an

increased lifelong risk for second cancers. Members of the patient’s family can have appropriate genetic

testing to accurately determine who is at risk. As with patients with bilateral retinoblastoma, knowing the

specific type of mutation provides the most detailed provision of medical management and counselling.

Cost-effectiveness [Brenda/Crystal] FIGURE/FLOW CHART

Difficulties and opportunities across different jurisdictions/countries [Jeffry/Sameh]

Compare/contrast Canada vs China vs Jordon

Societal/cultural challenges to GC

19

Sameh Gaballah, 12/28/16,
References Jeffrey.
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Conclusions

20

Page 21: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

REFERENCES

Uhlmann, WR; Schuette, JL; Yashar, B. (2009) A Guide to Genetic Counseling. 2nd Ed. Wiley-

Blackwell.

Shugar, A. (2016) Teaching Genetic Counseling Skills: Incorporating a Genetic Counseling

Adaptation Continuum Model to Address Psychosocial complexity. J Genet Counsel. Epub ahead of

print. PMID: 27891554 DOI: 10.1007/s10897-016-0042-y

21

Gallie Brenda, 12/28/16,
Journal article 1. Boisjoly HM, Bernard PM, Dube I, et al. Effects of factors unrelated to tissue matching on corneal transplant endothelial rejection. Am J Ophthalmol 1989; 107: 647­54. References double-spaced in AMA style
Page 22: INTRODUCTION - sharedocs.ca  · Web viewRetinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.1 It is considered the prototype of genetic

Table X:

Subretinal Fluid (RD)

No≤ 5 mm

>5 mm - ≤ 1 quadrant

> 1quadrant

Tum

or

Tumors ≤ 3 mm and further than 1.5 mm from the disc and fovea cT1a/A cT1a/B cT2a/C cT2a/D

Tumors > 3 mm or closer than 1.5 mm to the disc and fovea cT1b/B cT1b/B cT2a/C cT2a/D

Se

edin

g Localized vitreous/ subretinal seeding cT2b/C cT2b/C cT2b/C cT2b/Ddiffuse vitreous/subretinal seeding cT2b/D

High

risk

feat

ures

Phthisis or pre-phthisis bulbi cT3a/ETumor invasion of the pars plana, ciliary body, lens, zonules, iris or anterior chamber cT3b/ERaised intraocular pressure with neovascularization and/or buphthalmos cT3c/EHyphema and/or massive vitreous hemorrhage cT3d/EAseptic orbital cellulitis cT3e/EDiffuse infiltrating retinoblastoma ??/E

Extraocular retinoblastoma cT4/??

clinical T (cT) versus International Intraocular retinoblastoma Classification (IIRC) (cT/IIRC); ?? Not

applicable ; RD Retinal detachment

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