hypothetical trans-sialidase rhs masp tcmuc dgf-1 gp63 other genes supplementary figure 2:...

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Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes by the reads from the T. cruzi strains: Arequipa, Colombiana, Sylvio, Esmeraldo, Y and 231. The blue line corresponds to the normalized RDC of each position, estimated by the ratio between the RDC and the genome coverage. Below, the protein- coding genes are depicted as rectangles drawn as proportional to their length, and their coding strand is indicated by their position above (top strand) or below (bottom strand) the central line. Colored boxes represent multigene families, where yellow is Trans-sialidase, green is RHS, brown is MASP, orange is TcMUC, blue is DGF-1 and pink is GP63. Black and grey rectangles represent hypothetical and housekeeping genes, respectively. Gaps are represented by gene-less regions with no read coverage Exemple: Normalized RDC of each position Gene positions in the chromosome GAP Multigene families cluster Hypothetical / Housekeeping cluster

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Page 1: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes

Hypothetical Trans-sialidase

RHS

MASP

TcMUC

DGF-1

GP63

Other genes

Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes by the reads from the T. cruzi strains: Arequipa, Colombiana, Sylvio, Esmeraldo, Y and 231.The blue line corresponds to the normalized RDC of each position, estimated by the ratio between the RDC and the genome coverage. Below, the protein-coding genes are depicted as rectangles drawn as proportional to their length, and their coding strand is indicated by their position above (top strand) or below (bottom strand) the central line. Colored boxes represent multigene families, where yellow is Trans-sialidase, green is RHS, brown is MASP, orange is TcMUC, blue is DGF-1 and pink is GP63. Black and grey rectangles represent hypothetical and housekeeping genes, respectively. Gaps are represented by gene-less regions with no read coverage

Exemple:

Normalized RDC of each position

Gene positions in the chromosome

GAP Multigene families cluster

Hypothetical/Housekeeping cluster

Page 2: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes

Arequipa

Page 3: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 4: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 5: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 6: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 7: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 8: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 9: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 10: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes

Colombiana

Page 11: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 12: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 13: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 14: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 15: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 16: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 17: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 18: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes

Sylvio

Page 19: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 20: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 21: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 22: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 23: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 24: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 25: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 26: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes

Esmeraldo

Page 27: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 28: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 29: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 30: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 31: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
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Y

Page 35: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 36: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 37: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 38: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 39: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 40: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
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231

Page 43: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 44: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 45: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 46: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 47: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 48: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes
Page 49: Hypothetical Trans-sialidase RHS MASP TcMUC DGF-1 GP63 Other genes Supplementary Figure 2: Normalized RDC of each position on the 41 CL Brener chromosomes