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    1

    Chapter 1 Concepts and

    Models in Organic Chemistry

    General discussion of some overall concepts

    in organic chemistry.

    2

    Chapter 1 Problems

    Problems each worth 5 pts.

    1, 4, 6, 14, 16, 21

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    3

    What is a model?

    A representation of the real

    Details of the model are only as useful as

    they are helpful to explain observations.

    When a model does not explain

    observations it must be modified or thrown

    out.

    4

    Modern Models

    How do we arrive at Models

    Imagination

    Creativity

    Desire to explain what we observe

    Often quantitative in order to explain

    observations from instruments.

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    5

    Examples of Models.

    Lewis dot diagrams

    Tinker Toy Models

    Dreiding Models

    CPK space filling models

    Quantum Mechanical Models

    6

    How do we know what amolecule look like?

    Imagination

    Not very quantitative

    Helps sharpen understanding

    Graphic representation of quantitative

    models.

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    7

    Ethane Model

    Different views

    Each has a use.

    8

    Molecular dimensions.

    How do we get the molecular dimensions of

    molecules?

    X-ray

    Electron and Neutron diffraction

    Only on solids

    Give nuclei positions of heavy atoms

    Microwave

    Usually low MW molecules

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    9

    Bond Lengths and Angles

    Represent the inter-nuclei distances as

    points in space

    The electron density extends out from these

    points.Molecule rC-H rC-X

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    Covalent Radii

    Functions of charge.

    C4+ 0.15A while C4- 2.60A

    Depends on bonding

    C bonded to four groups 0.772A

    C double bonded 0.67A

    Effective Radii for groups of atoms. CH3 2.0A

    12

    Atomic Volume and Surface

    Atomic volumes can be calculated from

    values in Table 1.3 (p.8)

    Butane

    2xCH3 = 2x17.12 = 34.24

    2x CH2 = 2x10.23 = 20.46

    total=54.7cm3/mole

    Theory cal = 99.91 A3 = 60.14 cm3/mole

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    13

    Heats of Formation

    o is the difference in enthalpy between

    the compound and the elements in their

    standard state.

    Obtained from heats of combustion data.

    m C(graphite) + n/2 H2(gas ) CmHn Hof

    14

    Heats of Combustion

    Ho when the compound is burned with

    excess O2

    CmHn + (m+ n/4) O2 m CO2 + n/2 H2O Ho

    = heat of compustio

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    General caseC(graphite) + O2(gas) CO2(gas)

    Ho

    r= Ho

    f(CO2)

    H2(gas) + 1/2 O2(gas) H2O (liquid)

    Ho

    r= Ho

    f(H2O)

    Combining these quations.

    Ho

    f(CmHn) = mHo

    f(CO2) + n/2 Ho

    f(H2O) - Ho

    (combustion) (CmHn)

    16

    Corrections

    Change of phase

    heat of vaporization for liquids

    heat of sublimation for solids

    Temperature corrections

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    Example From BookO

    O

    + 8 O2 6 CO2 + 4 H2O Ho

    = -735.9 Kcal/mol

    Ho

    f(cyclohexanedione) = 4 Hof(H2O) + 6 H

    of(CO2) - H

    ocombustion (cyclohexanedio

    Hof(cyclohexanedione) = 4 (68.32) + 6 (94.05) - (-735.9) = -101.68 Kcal/mol

    Correction of solid to gas Ho

    sub = +21.46 Kc al/mol

    Hof(cyclohexanedione) = -101.68 Kcal/mol + 21.46 = -80.22 Kcal/mol

    Hof(H2O) = -68.32 Kcal/mol H

    of(CO2) = -94.05 Kc al/mol

    18

    Differences BetweenCompounds

    You can use heats of reactions if you go to a

    common product.

    Tran more stable than cis by 1 Kcal/mol

    CH3

    H

    CH3

    H

    CH3CH2CH2CH3

    H

    CH3

    CH3

    H

    -27.6 Kcal/mol-28.6 Kcal/mol

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    Principle Additivity

    The property of a molecule can be estimated

    from the the parts (bonds or groups).

    If you know the contribution from a group

    in one molecule you can use it in another

    calculation.

    Hof(CH2) = -35.1 - -30.4 Kcal/mol = -4.7 Kcal/mol

    CH3CH2CH2CH3 CH3CH2CH2CH2CH3

    Ho

    f= -30.4 Kcal/mol Ho

    f= -35.1 Kcal/mol

    20

    Table 1.5 Bond Increments toHof

    How well does this method work?

    CH4 cal -15.32 found -17.89 Kcal/mol

    Ethane

    6 C-H and 1 C-C

    6 (-3.83) + 1 (2.73) = -20.25 Kcal/mol

    Found -20.24 (not bad)

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    Problem

    Calculated values

    They are the same

    Obs. -32.4 Kcal/mol and -30.4 Kcal/molrespectively.

    CH3CHCH3

    CH3

    CH3CH2CH2CH3

    10 (-3.83)

    3 (2.73)= -30.11 Kcal/mol

    10 (-3.83)

    3 (2.73)= -30.11 Kcal/mol

    22

    Group Increments(Table 1.7)

    Group contributions allow for different

    bond types.

    Obs. -32.4 Kcal/mol and -30.4 Kcal/mol

    respectively (better?)

    CH3CHCH3

    CH3

    CH3CH2CH2CH3

    3 CH3 = 3 (-10.8)

    1 CH = -1.9= -34.3 Kcal/mol

    2 CH3 = 2 (-10.8)

    2 CH2 = 2 (-4.5)

    = -29.6 Kcal/mol

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    Limitation

    Group increments do not consider strain

    contribution

    CH3CHCH2CH2CH3

    CH3

    3 CH3 = 3 (-10.8)

    2 CH2 = 2 (-4.5)

    1 CH = 1 (-1.9)=-42.04 Kcal/mol (exp. -41.66)

    CH2CH3

    HH

    CH3

    CH3 H

    1 gauscheinteratction 0.8

    Correction -42.04 + 0.8 = -41.24 (better)

    24

    Bond Dissociation Energies

    The energy needed to break the bond.

    Homolytic

    Hetrolytic

    A B A B Hor

    A B A B Hor

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    Using Bond Dissociation

    Energies

    Example

    This calculation does not say anything

    about how fast the reaction occurs.

    Ho

    = 2(-104. Kcal/mol) + 104.2 + 88 = -15.8 Kcal/mol

    A checkHor= 2 H

    of (CH4) - H

    of(CH3CH3) - H

    of(H2) = 2(-17.9) - (-20.2) - 0 = -15.6 Kcal/mol

    CH3CH3 + H2 2 CH4

    H2 2 H DHo

    = 104.2 Kcal/mol

    DHo

    = 88 Kcal/molCH3CH3 2 CH3

    2 CH3 + 2 H 2 CH4 2 DHo

    = 2 (-104 Kcal/mol)

    26

    Bonding Models

    What holds molecules together?

    Groups of atoms find they are a lower energy

    when they are associated with each other. They

    are bonded.

    Electrostatic attractions.

    Covalent bond

    Na+

    Cl- NaCl energy

    H H H H

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    Models

    Lewis Model

    For some reason atoms (first row) are in a low

    energy state if the have 8 electrons around them.

    Why?

    Electron transfer between atoms of different

    electronegativity

    F-1

    O-2

    N-3Ne

    F Cs Cs+1

    F-1

    28

    Covalent Bond

    Both atoms have the same EN

    Bonding only involves outer shell electrons

    (valence shell electron)

    F F F F

    P 1s2 2s2 2p6 3s2 3p3

    core valence electrons

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    Dipole Moment

    Vector sum of the dipole moments of the

    bonds.

    Dipole moments useful in understandingproperties.

    = charge (esu) X distance (cm) = Debye (D)

    = 0.1 (4.8 x 10-10

    esu) 1.5 A(1 x 10-8

    cm/A) = 0.72 x 10-18

    esu cm = 0.72 Debye (D)

    A B+0.1 esu -0.1 esu

    1.5A

    30

    Which Molecules Have DipoleMoments?

    Cl HCH3

    Cl

    H

    H

    CH3

    CH3

    H

    H

    CH3CH2CH2OH

    Cl

    Cl

    Cl

    OO

    O

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    Bond Polarity

    Bond polarity comes from unequal sharing

    of bonding electrons.

    Polar Bond = Covalent part + ionic part

    molecule =covalent + ionic

    % Ionic character = 2

    (1 + 2)

    (100)

    32

    Electronegativity

    Unequal sharing of electrons between atoms

    of a bond.

    Pauling Electronegativity Scale

    Compares bond dissociation energies of like

    atoms with those of unlike atoms.

    H2 and Cl2 (104.2 + 58)/2 = 81.1 Kcal/mol HCl 103.2 (larger due to ionic character)

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    Table 1.8

    Other EN scales

    Pauling,p Mullikin,m (I+A)/2

    Allen,spec Nagel, Benson,

    x Which EN scale to use depends on

    application.

    34

    Bonding

    Valence Bond Theory (VB)

    Bring together of atoms which share electrons.

    Molecular Orbital Theory (MO)

    Bring together nuclei which are held together

    by electrons.

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    H2 Molecule

    Two Hydrogen atoms

    We can write the equations for a 1s orbital.

    Wave functions

    H1s H1s

    1 = c a(1) b(2)

    2 = c a(2) b(1)

    VB = c a(2) b(1) + c a(2) b(1)

    36

    LCAO Method

    LinearCombinations ofAtomic Orbitals

    1 = c1 a(1) + c2 b(1)

    2 = c1 a(2) + c2 b(2)

    MO = 12 = c12 a(1) a(2) + c2

    2 b(1) b(2) + c1c2[a(1)b(2) + a(2)b(1)

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    Comparison

    VB is simpler and is incorporated into the

    MO wave function

    LCAO method has ionic contribution

    As terms are added to either model they

    both give better answers and they become

    very much alike.

    38

    Energy Levels

    The MO model generates the orbital and the

    energies of the orbitals.

    Energy

    H H-H H

    AO AOMO

    s s

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    Methane

    Atomic Orbital view.

    1s2 2s22p2

    This model predicts

    CH2 with a bond angle

    of 90 o

    Energy

    s

    s

    p

    AO

    Carbon

    40

    Observation

    Methane is CH4.

    Need new model with 4 unpaired electrons.

    Two possible solutions

    unpair one of the s electrons and put it in a p

    orbital.

    Completely reorganize the orbital.

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    41

    Hybridization

    A model that can be used to explain what

    we observe.

    Based on AOs

    Linear Combination of an s and three p orbitals

    Higher in energy than an s but lower than a p.

    42

    Energy

    s

    sp3

    Energy p

    Carbon

    s

    Hybridized

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    LCAO

    Four AOs must yield 4 MOs

    There is an error in the book

    sp3 = 1/2( C2s + C2px + C2py + C2pz)

    sp3 = 1/2( C2s - C2px - C2py + C2pz)

    sp3 = 1/2( C2s + C2px - C2py - C2pz)

    sp3 = 1/2( C2s - C2px + C2py - C2pz)

    44

    Shape and Orientation

    The electron distribution must have the

    characteristics of both s (spherical) and p

    (node) orbitals.

    The four new electron distributions

    (orbitals) will orient as far away from each

    other as possible. Toward the corners of atetrahedron.

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    Photoelectron Spectroscopy

    Measures the energy of electrons ejected

    from a molecule when hit by a photon.

    Binding energy = photon energy - emitted

    photon energy

    h = T + EB

    Methane shows >290 ev (C1s) and two morebands, 23.0 ev and 12.7 ev. (Two types of

    orbitals)

    46

    Orbital Symmetry

    The MOs must be symmetric or anti-

    symmetric with respect to the AOs (basis

    set).

    The sigma bond resulting from the C sp3

    and H 1s do not have the symmetry of the s

    an p orbital.

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    New Approach

    Consider all the AOs of C and 4 Hs.

    Select symmetric or anti-symmetric linear

    combination.

    If we ignore the C1s electrons there should

    be 4 bonding and 4 non-bonding orbitals.

    48

    Orbitals and Energies

    -13.30708 Kcal/mol

    -28.87874 Kcal/mol

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    49

    VSEPR Theory

    Valence Shell Electron PairRepulsion

    Theory

    Electrons in orbitals will take on a geometry

    that has the electrons as far away from each

    other as possible.

    2 sp 180 deg.

    3 sp2 120 deg.

    4 sp3 109.5 deg.

    50

    Methyl Chloride

    Predicted bond angles

    H-C-H 109.5o

    H-C-Cl 109.5o

    Experimental

    H-C-H 110o 52

    H-C-Cl 108o 0

    Why?

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    VSEPR Explanation

    Cl more EN than Carbon. Draws electon

    density toward Cl.

    C-H bond shorter.

    The electron density is shifted toward the Cl

    so the Hs repel each other more than in

    methane making H-C-H bond angle greater. The H are attracted to the Cl so the H-C-Cl

    bond angle is smaller

    52

    MO Explanation

    The HOMOs show significant bonding

    between the Cl and C-H bond

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    53

    Variable Hybridization

    Because of the EN of chlorine the methyl

    chloride molecule will be less symmetric.

    The C-Cl bond will have more p character

    which results in the C-H bond having more

    s character.

    C-H shorter and H-C-H angle larger.

    54

    Hybridization Parameter

    For a bond spn is the hybridization

    parameter.

    2 = n

    For an sp3 the fractional s and p character

    are1

    1+ 2i% s = % p =2

    i1+ 2i

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    Interorbital Angles

    Based on hybridization model

    Angle A-C-B

    Angle A-C-A

    1 + a b cos ab = 0

    1 + a2 cos aa = 0

    56

    Methyl Chloride (again)

    Two bond angles H-C-H and H-C-Cl

    Relationship between these two angles

    If we know one we can calculate the other.

    If H-C-Cl is 108 o then

    3 sin2ab = 2 (1 - cos a a

    cos aa = 1 -3 sin

    2ab

    2

    cos aa = 1 -3 (sin (108))

    2

    2

    aa = 110o

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    Carbon Orbital

    Orbital to H.

    sp2.86

    The other C orbital to Cl

    sp3.5

    a2 =

    - 1

    cos aa

    = 2.86

    31

    1 + 2.86+

    1

    1 + b2

    = 1

    b2 = 3.50

    58

    Curved Bonds

    Consider CH2Cl2 Measured Cl-C-Cl 111o 47; H-C-H 112 o 0

    Cal. C to Cl orbital sp2.69; C to H sp3.37 or a

    bond angle of 107.

    The bond angle does not fit experimental.

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    59

    Are Bonds Straight Lines

    Between Nuclei?

    Electron density may lie outside the line

    between two nuclei.

    Internuclear bond angle - defined by nuclear

    positions

    Interorbital bond angle - defind by the

    direction the orbital leaves the atom.

    60

    Bent Bonds

    Best example cyclopropane

    C-H hybridization sp2.36 which would make

    the C-C sp2.69 which would predict an

    interorbital angle of 111.8 o; > 60 o.

    C

    C

    C

    H

    H

    Interatomic 115.1

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    Measurable Properties

    Hybridization parameter can not be

    measured directly but it can be correlated to

    some measurable parameters.

    J13C-H (cps) = 500/ (1 - 2)

    rC-H = 1.1597 - 10-4 J13C-H

    log k rel = 0.129 J13C-H - 15.9

    62

    , Model for Ethene

    Carbon is sp2 hybridized

    H-C bond is shorter than normal because

    bond has more s character

    C-C bond has two parts; from overlap of

    two C sp2 hybrids and a from overlap of

    two p orbital. H-C-H 120 o and the same for H-C-C.

    C-C shorter, more s character

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    Energy Diagram

    PEsp

    2

    Hybrid Orbitalsof Carbon

    p

    Hybrid Orbitalsof Carbon

    sp2

    p

    MO's

    to H 1s to H 1s

    64

    Bent Bond Model

    Pauling

    Carbons are sp3 with two sp3 from each

    carbon overlapping to for two bent bonds.

    Predicts planar but bond angles of 109.5 o

    C

    H

    H

    C

    H

    H

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    65

    Acidity of Hydrocarbons

    Hydrocarbons are weak acids.

    Ethane 10-42, ethene 10-36.5, ethyne 10-25

    R H + B R -

    + HB+

    Ka =[R-] [HB+]

    [RH] [B]

    66

    Why?

    The anion stability follows the s character

    of the orbital that the resultant anion exist

    in.

    sp3 anion less stable than sp2 which is less

    stable than sp. Therefore, alkanes less acidic

    than alkenes which are less acidic thanalkynes

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    Bent Bond Rationalization

    The bent bond pulls the electron pair of the

    anion closer to the center of the internuclear

    axis of the C-C bond.

    Less electron pair -- electron pair repulsion

    HHH

    H H

    H

    H H

    H

    0O

    60O?

    68

    Which Model is Correct?

    Neither!

    Both models are useful and must be used

    with care.

    Usually they converge on the same solution

    when considered in great detail.