filipino dna variation at 36 y-chromosomal short tandem repeat (str… · 2019. 10. 9. ·...
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Keywords: Filipino, population genetics, rapidly mutating (RM) Y-STRs, short tandem repeats (STRs), chromosome, Y-STR marker units
Filipino DNA Variation at 36 Y-chromosomal Short Tandem Repeat (STR) Marker Units
1DNA Analysis Laboratory, Natural Sciences Research Institute, University of the Philippines Diliman, Quezon City 1101 Philippines
2Philippine Genome Center, University of the Philippines, Quezon City 1101 Philippines3Genetics and Molecular Biology Division, Institute of Biological Sciences,
College of Arts and Sciences, University of the Philippines Los Baños, Laguna 4031 Philippines
Jazelyn M. Salvador1,2*, Jae Joseph Russell B. Rodriguez1,3, Lindsay Clare D.L. Carandang1,2, Altair B. Agmata1,2, Maria Lourdes D. Honrado1,
Frederick C. Delfin1,2, and Maria Corazon A. De Ungria1,2
Y-chromosomal short tandem repeat (Y-STR) markers are used in deficient paternity testing cases, in the detection of male DNA in vaginal smears/swabs collected during investigations of sexual assault cases, and in the identification of missing persons and disaster victims. The increasing relevance of Y-STR DNA typing to forensic practice necessitates evaluation of new markers with high gene diversity and mutation rates in the population. This study presents the work done for the Philippine population. Y-STR haplotypes composed of 36 Y-STR marker units were analyzed in a Filipino population sample of 299 individuals using the PowerPlex® Y23 (PPY23) system and protocols of the International RM Y-STR Study Group that target a set of 13 Rapidly Mutating Y-STR (RM Y-STR) comprising 15 Y-STR marker units. Concordant results were observed at two RM Y-STR marker units, namely DYS570 and DYS576, that are included in both assays. Allele frequency and gene diversity were estimated for each Y-STR marker unit, while haplotype frequency and haplotype diversity were estimated for several combinations of Y-STR marker units. The inclusion of 15 RM Y-STR marker units increased the power of the Filipino Y-STR database to differentiate paternally related males. Comparison of the Filipino Y-STR haplotype data at 36 Y-STR marker units with other populations showed the same level of substructuring for the 21 slow and moderately mutating Y-STR marker units based on geographic locations. This highlights the importance of using an appropriate population database in forensic casework. In addition, the observed high diversity of RM Y-STR haplotypes supports the need for studying diverse group of populations to characterize the extent of RM Y-STR haplotype variation. The Filipino Y-STR haplotype database reported in this study would be of great use for reliable estimation of haplotype frequency for statistical evaluation of forensic caseworks in the Philippines.
Philippine Journal of Science148 (S1): 43-52, Special Issue on GenomicsISSN 0031 - 7683Date Received: 21 Mar 2019
*Corresponding Author: [email protected]
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INTRODUCTION Male-specific polymorphisms on the non-recombining region (NRY) of the Y-chromosome, specifically short tandem repeat (STR) markers, are an important tool for forensic investigations (Roewer 2009). Y-STR DNA analysis is used in sexual assault investigations because it enables targeted analysis of the DNA of male contributor/s despite the presence of abundant female DNA in intimate samples. In addition, Y-STR DNA analysis is used for missing person investigation in cases when reference DNA samples from paternal male relatives (PMR) are available for comparison. In motherless paternity testing or when father is not available (deficient paternity cases), DNA profiles of male offspring can be compared to their PMR.
The number of Y-STRs used for forensic purposes has increased dramatically in the past years since the completion of the human Y-chromosome DNA sequence in June 2003 (Skaletsky et al. 2003). Previously generated Y-STR haplotype DNA data for the Philippine population mostly characterized the core set of nine Y-STRs or “minimal haplotype” and 12 Y-STRs included in the PowerPlex® Y (PPY) system (Table 1) (Tan et al. 2003, Salvador et al. 2008, Delfin et al. 2011). However, Y-STRs with low mutation rates (< 0.01) are limited by their inability to differentiate between paternally related males (Roewer 2009). While non-matching Y-STR profiles can reliably exclude persons-of-interest in forensic investigations, a match between a suspect and evidence does not rule out possible contribution of the suspect’s brother, father, son, paternal uncle, paternal cousin, or even a distant cousin from the same paternal lineage as contributor of male DNA in the evidence.
To increase the power of discrimination of Y-DNA testing, additional Y-STRs with high gene diversity and mutation rates were evaluated (Kayser et al. 2004, Ballantyne et al. 2010). In 2010, a set of 13 Y-STRs with 6.5-fold higher mutation rates compared with 17 Y-STRs included in the AmpFlSTR® Yfiler® (Yfiler) kit (Life Technologies, Forster City, CA, USA) (Table 1) were shown to be capable of differentiating paternally-related males such as fathers and sons or brothers, and were aptly named "rapidly mutating" (RM) Y-STRs (Ballantyne et al. 2010, 2012). In 2012, the PPY23 – a new Y-STR multiplex system from Promega combining the 17 standard Yfiler Y-STRs; two RM Y-STRs (DYS570 and DYS576); and four other Y-STRs (DYS481, DYS533, DYS549, and DYS643) with high gene diversity – was released (Table 1) (Thompson et al. 2013). To understand the genetic diversity of these new Y-STRs, worldwide population studies were conducted (Ballantyne et al. 2014, Purps et al. 2014). Our participation in these studies yielded Y-STR data for the 23 Y-STR panel
(Purps et al. 2014) and the 13 RM Y-STRs comprising 15 Y-STR marker units (Ballantyne et al. 2014). Because of the limitation in the number of Philippine samples available at that time, these earlier reports did not fully characterize the Y-STR genetic variation of the Filipino male population. The inclusion of a significant number of Y-STR haplotypes in reference populations is required when assessing the statistical weight of Y-STR haplotype matches based on a likelihood ratio principle (Gjertson et al. 2007, Buckleton et al. 2011). This is the impetus behind the need to continuously increase the number of samples and the type of DNA markers that are included in forensic databases.
This paper reports the expansion of the Philippine Y-STR reference database to include a total of 299 samples genotyped at 36 Y-STR marker units using PPY23 and the RM Y-STR set reported by Ballantyne and co-workers (2014). Because of the increasing number of multi-copy Y-STR markers wherein the additional copy is treated separately, the term “Y-STR marker units” was adopted and applied to two standard Y-STR markers – namely DYS389 and DYS385, as well as the RM Y-STR markers DYF4031S1 and DYS526 (Purps et al. 2014, Westen et al. 2015). DYS389 generates two amplicons (DYS389 I and DYS389 II) because the forward PCR primer binds to the flanking region of two different repeat regions that are approximately 120 bp apart (Butler 2012), whereas DYS385 primers bind to two different regions that are facing opposite directions and are 40,775 bp apart (Butler 2012). DYS385 alleles cannot be assigned specifically to DYS385a or DYS385b; hence, DYS385 genotypes are analyzed as haplotypes. Likewise, RM Y-STR marker units include DYS526a and DYS526b, and DYF4031S1a and DYF4031S1b for DYS526 and DYF4031S1 RM Y-STRs, respectively (Westen et al. 2015). DYS526 is similar with DYS389 wherein the forward PCR primer binds to two distinct regions generating DYS526a and DYS526b. DYF403S1 is a duplicated STR system with four positions in the NRY – three of these copies belong to DYF403S1a and one copy belong to DYF403S1b (Ballantyne et al. 2014). DYF399S1 and DYF404S1, which often show multiple alleles per marker (between one to five alleles), were each considered as a marker unit (Westen et al. 2015).
On the basis of mutation rates, the 36 Y-STR marker units may be arbitrarily classified into slow (μ < 0.002), moderate (0.002 ≤ μ < 0.010), and rapid (0.010 ≤ μ) mutation rates (Table 1) (Ballantyne et al. 2010). In this study, counts and frequencies of alleles and haplotypes observed at 36 Y-STR marker units are reported. We also report the estimated genetic distances between populations.
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Table 1. 36 Y-STR marker units analyzed in this study.
Y-STR marker
Y-STR panel/Multiplex kit
Mutation ratea Mutation groupb
Min
imal
Ht
(199
7)
SWG
DA
M(2
003)
Pow
erPl
ex®
Y
(Pro
meg
a)(2
003)
Am
pFlS
TR®
Y
filer
TM (L
ife
Tech
nolo
gies
) (2
004)
Pow
erPl
ex®
Y
23
(Pro
meg
a)(2
012)
RM
Y-S
TR(2
010)
DYS19 2.3 x 10–3 moderate
DYS385a/b 2.1 x 10–3 moderate
DYS389I 2.5 x 10–3 moderate
DYS389II 3.6 x 10–3 moderate
DYS390 2.1 x 10–3 moderate
DYS391 2.6 x 10–3 moderate
DYS392 4.0 x 10–4 slow
DYS393 1.0 x 10–3 slow
DYS438 3.0 x 10–4 slow
DYS439 5.2 x 10–3 moderate
DYS437 1.2 x 10–3 slow
DYS448 1.6 x 10–3 slow
DYS456 4.2 x 10–3 moderate
DYS458 6.4 x 10–3 moderate
DYS635 3.5 x 10–3 moderate
Y GATA H4 2.4 x 10–3 moderate
DYS481 4.97 x 10–3 moderate
DYS533 5.01 x 10–3 moderate
DYS549 4.55 x 10–3 moderate
DYS643 1.5 x 10–3 slow
DYS570 1.24 x 10–2 rapid
DYS576 1.43 x 10–2 rapid
DYF387S1 1.59 x 10–2 rapid
DYF399S1 7.73 x 10–2 rapid
DYS518 1.84 x 10–2 rapid
DYS526a 2.72 x 10–2 rapid
DYS526b 1.25 x 10–2 rapid
DYS626 1.22 x 10–2 rapid
DYS627 1.23 x 10–2 rapid
DYS449 1.22 x 10–2 rapid
DYS547 2.36 x 10–2 rapid
DYS612 1.45 x 10–2 rapid
DYF403S1a 3.10 x 10–2 rapidDYF403S1b 1.19 x 10–2 rapid
DYF404S1 1.25 x 10–2 rapidHt – haplotypeSWGDAM – Scientific Working Group on DNA Analysis MethodsaKayser et al. 2002, 2004; Willuweit and Roewer 2007; Ballantyne et al. 2010, 2014; Butler 2012bBallantyne et al. 2010
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MATERIALS AND METHODS
Population Samples and DNA ExtractionBlood samples, collected from 299 unrelated Filipino male individuals residing in the National Capital Region and its surrounding urban area, were transferred onto a Whatman™ FTA™ card and processed according to manufacturer's recommendations (GE Healthcare Life Sciences, Uppsala, Sweden). All the volunteers signed an informed consent form before participating in this study. Data generated from three research projects previously approved by the University of the Philippines Manila – Research Ethics Board (UPMREB-2012-247-01, UPMREB-2012-0321, and UPMREB-2012-0276) were combined to allow for more in-depth analysis of Y-STR variations in the Philippine population.
Y-STR DNA TypingAll 299 Philippine DNA samples were processed using two Y-STR typing systems – a commercially available PPY23 System (Promega Corp., Madison, WI, USA) and a RM Y-STR typing system with three multiplex assays (Ballantyne et al. 2014).
For PPY23 typing, a 1.2 mm FTATM disc of each sample was amplified using a final reaction volume of 10 μL. Thermal cycling was performed following manufacturer's recommendations. To verify the presence of microvariant, null, "off-ladder," and tri- alleles, relevant samples were also amplified using the AmpFlSTR® YfilerTM PCR Amplification Kit (Life Technologies, Forster City, CA, USA). PCR products were analyzed using the Applied Biosystems (AB) 3500 HID Genetic Analyzer and GeneMapper® ID-X (GMID-X) software v1.2 following manufacturer's protocols. Alleles were assigned according to the guidelines of the International Society of Forensic Genetics (ISFG) for forensic Y-STR analysis (Gusmão et al. 2006).
RM Y-STR multiplex amplifications were performed using one 1.2 mm FTATM disc of each sample for each of the three multiplex reactions following published protocols (Ballantyne et al. 2014). Amplified DNA samples were detected using the AB 3500 HID Genetic Analyzer with Hi-DiTM formamide (Life Technologies, Forster City, CA, USA); Internal Lane Standard (ILS) 600 (Promega Corp., Madison, WI, USA); and allelic ladders from the International RM Y-STR Study Group. Data were analyzed using the GMID-X software v1.2 (Life Technologies, Forster City, CA, USA). RM Y-STR alleles were labeled based on the International RM Y-STR Study Group nomenclature (Ballantyne et al. 2014).
Quality ControlFor PPY23 quality control, the Y-STR typing procedure was validated using five blind samples as part of the Y-STR Haplotyping Quality Assurance Exercise organized by the Y-chromosome Haplotype Reference Database (YHRD) (http://www.yhrd.org/). Subsequently, PPY23 data of 169 Filipino samples out of 299 Filipino samples in this study were generated as part of a global study to evaluate PPY23 (Purps et al. 2014). The presence of microvariant and/or unreported alleles was verified using YfilerTM kit, when possible. All 299 PPY23 haplotype data presented in this study were submitted to YHRD and given the accession number YA003206.
For RM Y-STR quality control, the Y-STR typing procedure was validated using nine blind samples as part of a global multicenter study (Ballantyne et al. 2014). RM Y-STR data from seven Filipino samples out of 299 Filipino samples in this study were included in the multicenter study (Ballantyne et al. 2014).
Analysis of DataAllele and haplotype frequencies were calculated using the counting method. The number of occurrences of each allele in each marker unit and each haplotype was counted using Excel (Microsoft, Redmond, WA, USA). Allele frequencies were calculated following Westen and co-workers (2015). Gene diversities (GD = 𝑛
(𝑛−1) (1−𝛴𝑝𝑖²)where n is the total number of samples and pi is the frequency of the i-th allele per Y-STR marker unit), and haplotype diversities (HD= 𝑛
(𝑛−1)(1−𝛴�𝑖²) where hi is the haplotype frequency) were calculated (Nei 1987). For the calculation of GD, DYS385a/b, DYF387S1, DYF399S1, DYF403S1a, and DYF404S1 genotypes were treated as haplotypes. For the calculation of HD and to match Arlequin software version 3.5.1.3 (Excoffier and Lischer 2010) STR data format, the ‘‘empty cells’’ in multi-copy marker units were filled with an arbitrary value such as “100” for samples that showed less than the maximum number of alleles (Westen et al. 2015). The discrimination capacity (DC) of each marker panel set was determined by dividing the number of unique haplotypes observed by the number of samples.
To show the capability of different marker panels to distinguish individual haplotypes, haplotype analysis of different Y-STR marker unit combinations was performed based on 1) core set of Y-STR markers recommended by the European forensic community (Minimal) and the United States Scientific Working Group on DNA Analysis Methods (SWGDAM); 2) commercially available Y-STR kits – PPY, YfilerTM kit (Yfiler), and PPY23; 3) mutation rate group – slow (SMY), moderately (MMY), rapidly (RMY), and slow to moderately (SMMY) mutating Y-STR; and 4) the entire panel of 36 Y-STR chromosomal
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Table 2. Forensic statistical parameters for different sets of Y-STR markers in the Filipino male population (n = 299).
Y-STR panel set No. of Y-STR marker unitsParameter
No. of unique haplotypes Haplotype diversity Discrimination capacity (%)
Minimal 9 241 0.9965 80.6
SWGDAM 11 259 0.9983 86.6
PPY 12 265 0.9986 88.6
Yfiler 17 292 0.9998 97.7
PPY23 23 299 0.99999999991 100.0
SMY 6 120 0.9749 40.13
MMY 15 293 0.9997 97.99
RMY 15 299 0.99999999991 100.0
SMMY 21 295 0.99991 98.7
Maximal 36 299 0.99999999991 100.0
SWGDAM – Scientific Working Group on DNA Analysis MethodsSMY – slow mutating Y-STRsMMY – moderately mutating Y-STRsRMY – rapidly mutating Y-STRsSMMY – slow to moderately mutating Y-STRs
marker units reported here (Maximal). The results of these analyses are shown in Table 2.
For population comparison using these 36 Y-STR marker units, published Y-STR data were collated for 12 populations – namely Spanish [Spain] (n = 38), Italian [Italy] (n = 20), Hungarian [Hungary] (n = 101), Lithuanian [Lithuania] (n = 75), Latvian [Latvia] (n = 119), Estonian [Estonia] (n = 105), Dutch [Netherlands] (n = 2,160), Japanese [Japan] (n = 33), Chinese [Singapore] (n = 102), Indian [Singapore] (n = 102), Malay [Singapore] (n = 102), and Xhosa [South Africa] (n = 25) (Ballantyne et al. 2014, Purps et al. 2014, Westen et al. 2015). Calculation of pairwise FST genetic distances and Analysis of Molecular Variance (AMOVA) were performed using the Arlequin software version 3.5.1.3 (Excoffier and Lischer 2010) and significance level was ascertained at 0.05. P-values were adjusted by applying the sequential Bonferroni correction (p = 0.05/91 = 0.00055) (Zeng et al. 2014). FST values were calculated because of the limitation in allele assignment of multi-copy markers and microvariant alleles to specific loci when FST is used (Ballantyne et al. 2014). In addition, FST is preferred over RST in measuring population substructure for forensic purposes (Budowle et al. 2009). Multidimensional scaling (MDS) analyses of pairwise FST matrices were performed using IBM SPSS Statistics 20 software (SPSS, Chicago, USA).
RESULTS AND DISCUSSION
Single Marker Unit AnalysisA final dataset of 299 Y-STR haplotypes was generated using the PPY23 and RM Y-STR protocols (Appendix Table I), targeting 36 Y-STR DNA marker units. The PPY23 and the RM Y-STR systems both contain DYS570 and DYS576, which were used to check the concordance for these two RM Y-STRs using two different systems, as well as to function as internal controls for sample verification.
Microvariant, "off-ladder," null, and tri- alleles were observed at several Y-STR marker units in the Filipino population (Appendix Tables I and II). The detection of microvariant alleles at DYS392 (allele 14.1), DYS643 (allele 11.1), and DYS392 (allele 14.1) were confirmed using the YfilerTM kit. The microvariant allele 14.1 at DYS392 has not been reported in other populations (YHRD Release 60, http://yhrd.org/search). An "off-ladder" allele observed at DYS481, which is one repeat unit larger than allele 33, was manually labeled as allele 34. This allele has not been reported in other populations (http://yhrd.org/search). A null allele at DYS439 that was reported previously (Purps et al. 2014) was also observed in the Philippine dataset. In one sample, three alleles were observed at DYS385a/b, which may be the result of a duplication event at the DYS385 region (Butler et al. 2005). Similar observations were reported in previous studies (Purps et al. 2014, Coble et al. 2013).
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Figure 1. Genetic diversity indices for 36 Y-STR marker units in the Filipino population (n = 299). Broken lines mark gene diversity at 0.50. Multi-copy Y-STR marker units (DYS385a/b, DYF387S1, DYF399S1, DYF403S1a, DYF403S1b, and DYF404S1) are tagged with *.
The Y-STR alleles present in the 299 unrelated Filipino DNA samples were counted. For this dataset, DYS389I, DYS391, and DYS437 have only four alleles – which is the smallest number of alleles per STR marker unit in the dataset. Notably, the small number of alleles at DYS389I and DYS391 is consistent with other Asian population data (Budowle et al. 2009). In contrast, DYF399S1 showed the largest number of alleles composed of 26 different alleles and 177 allele combinations (Appendix Table II).
The GD values for each of the 36 Y-STR marker units in the Filipino population are shown in Figure 1. GD values ranged from 0.27488 (DYS438) to 0.99535 (DYF399S1). The high GD value of DYF399S1 is attributed to the multi-copy nature of this RM Y-STR marker wherein up to five alleles can be observed in an individual (Ballantyne et al. 2014). Figure 1 shows that the GD value is below 0.50 at four standard Y-STR marker units (DYS389I, DYS391, DYS438, and DYS437). In comparison, all RM Y-STR markers units showed high GD values (> 0.70), which is consistent with previous studies (Ballantyne et al. 2014). This observation illustrates the disadvantage of using commercial kits that had been tested and developed primarily based on the genetic diversity of European, African, and South Asian population data, or the so-called “diversity-driven approach,” The selected Y-STRs are likely to be suitable only to these populations and may not be as useful to other populations. The disadvantage of using solely a
diversity-driven approach for selecting suitable Y-STRs for paternal lineage differentiation can be addressed by including the mutation rate estimates of Y-STRs in the selection process (Kayser 2017) and data from populations located in a wider geographical area.
Haplotype DiversityBecause Y-STR markers are located on the NRY, combined Y-STR data comprises a single haplotype. The power of using 36 Y-STR marker units in the Filipino population was evaluated using HD and DC values (Table 2). A total of 299 distinct haplotypes (HD > 99.99%) was observed. The DC value of 100% demonstrates the superior power of the 36 Y-STR marker unit system in the Filipino population. Similar HD and DC values were obtained for both PPY23 with two RM Y-STR marker units and the solely RMY haplotypes, while a lower HD and DC values were calculated for SMMY haplotypes (Table 2). The inclusion of DYS570 and DYS576 in PPY23 haplotypes increased the DC value from 98.7% (SMMY) to 100% (Table 2). This indicates that the high HD and DC values calculated from PPY23, RMY, and maximal Filipino haplotype database are due to the high gene diversity values and high mutation rates characteristic of RM Y-STR marker units (Thompson et al. 2013, Ballantyne et al. 2014).
RM Y-STR markers are more useful when there is a need to differentiate closely related males as persons-of-interest in specific forensic investigations. In contrast, RM Y-STR markers are not as useful for deficient paternity testing, familial searching, missing person, and disaster victim identification (Ballantyne et al. 2012, Henry et al. 2015), which require the sharing of similar haplotypes in order to identify PMRs. Y-STRs with slow to moderate mutation rates are ideal for these types of forensic Y-STR haplotyping applications (Kayser 2017). Hence, a good workflow would be to initially use Y-STRs with slow-moderate mutation rates (SMMY) to exclude non-PMR. This should be followed by RM Y-STR analysis of evidence against person-of-interest that would identify the human origin of the male DNA isolated from an evidentiary sample.
Genetic Structure and Population ComparisonData from 129 populations in 51 countries using 23 Y-STR marker units (Purps et al. 2014) showed that the PPY23 haplotype data provided higher discriminatory capacity than the YfilerTM kit. Comparison of PPY23 data across 129 populations showed patterns consistent with clustering according to geographic location and ethnic origin. In contrast, similar population comparisons using the RM Y-STRs showed little population
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substructure, thus highlighting the significance of the within-population genetic diversity of RMY STR markers compared to diversity between populations, and the individuating characteristic of this set of markers.
A closer look at the populations included in both multicenter studies and other studies (Ballantyne et al. 2014, Purps et al. 2014, Westen et al. 2015) showed that populations from Eastern Europe (Estonia, Hungary, Lithuania, Latvia); Western Europe (Spain, Italy, Netherlands); Southeast Asia [Singapore (Chinese), Singapore (Malay), Singapore (Indian)]; East Asia (Japan); and South Africa provided complete maximal haplotype data for the same individuals. This dataset was compared with the Philippine Y-STR haplotype data. The results obtained with the computations of pairwise FST differences between 13 populations are shown in Appendix Table III and graphically represented in Figure 2. The Filipino population data is significantly different from these 12 populations (p < 0.00055), with the smallest FST value observed between Filipinos and the Singaporean Malay population (FST = 0.01019). The Malay population from Singapore was the only group from Southeast Asia with publicly available PPY23 and RMY haplotype data for comparison. It would have been interesting to do similar comparisons with other populations in Southeast Asia such as those from Malaysia, Thailand, and Indonesia. Not surprisingly, the farthest genetic distance value was observed with the Xhosa population of South Africa (FST = 0.11844) (Appendix Table III).
Further MDS analyses of genetic relationships between Filipinos and these 12 populations using different combinations of Y-STR marker units reveal that non-RM Y-STR marker sets e.g., PPY, Yfiler and SMMY, showed a distinct grouping based on geography and ethnic background i.e., South Africa, Western Europe, Eastern Europe, Southern Asia (Singapore-Indian), Southeastern Asia, and Eastern Asia (Figures 2a–c). This is consistent with the MDS analysis of global populations using different forensic marker sets as reported by Purps and co-workers (2014). In contrast, a different pattern which cannot be explained by the geographic locations of the population samples was observed when populations were analyzed using only RMY haplotype data (Figure 2d). It has been shown that RMY haplotypes lack strong signals of population history (Ballantyne et al. 2014). Interestingly, MDS analysis of maximal haplotype data (Figure 2e) shows similar patterns of population structure as non-RM Y-STR marker sets (Figures 2a–c). When maximal haplotype data was analyzed, our study showed that the effect of slow to moderately mutating Y-STR marker units on population substructuring is greater than those of the RM Y-STR marker units (Figures 2d and 2e). This is supported by AMOVA results wherein the variation between population groups is higher for maximal haplotype data (1.28%) than that of RMY haplotype data (0.82%) (Appendix Table IV).
Figure 2. Two-dimensional MDS plots of pairwise FST
values for (a) PPY haplotypes, (b) Yfiler haplotypes, (c) slow to moderately mutating Y-STR (SMMY) haplotypes, (d) RMY haplotypes, and (e) maximal haplotype. Est – Estonia, Hu – Hungary, It – Italy, Jp – Japan, Lit – Lithuania, Lv – Latvia, Nl – Netherlands, Ph – Philippines, Sg_Chi – Singapore-Chinese, Sg_Mal – Singapore-Malay, Sg_In – Singapore-Indian, Sp – Spain, SAf – South Africa.
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The presence of population substructure in the 13 populations highlights the importance of using the appropriate population database when estimating the frequency of a Y-STR haplotype. If a national Y-STR haplotype database is not available or it lacks on sample size, a larger Y-STR haplotype reference database composed of populations showing small genetic distances may be used (Willuweit and Roewer 2007, Budowle et al. 2009). Our data also supports the recommendation of the National Research Council (NRC 1996) to use a co-ancestry coefficient (θ) to correct profile frequency estimates for possible population substructure effects, especially when using slow to moderately mutating Y-STR marker units. On the other hand, due to low between-population differentiation and lack of substructure with RMY haplotypes, a worldwide haplotype frequency database without θ correction can be used in statistical evaluation of RMY haplotype data for the identification of the source of a particular human sample such as in criminal investigations and victim identification (Alghafri et al. 2018).
CONCLUSIONWe report here the characterization of the genetic variation of male Filipino samples at 36 Y-STR marker units. Y-STR DNA typing of 299 unrelated Filipino males expanded the previously reported Philippine Y-STR databases. The additional Y-STRs increased the haplotype diversity of the Filipino database, which makes it more suitable for use in male relationship testing and male identification in forensic practice. Population analysis performed using FST values of 13 populations indicated the presence of genetic differences with other populations, thus supporting the need for an appropriate population reference database in statistical evaluation of Y-STR DNA typing results in forensic casework.
The Filipino haplotype data presented in this study is expected to resolve a broader spectrum of forensic cases. While the Filipino haplotype database of slow to moderately mutating Y-STRs can be used to evaluate matches in paternal/kinship determination and familial searching, the RM Y-STR haplotype database can be used for paternal lineage identification and male identification analysis.
ACKNOWLEDGMENTSThis study was financially supported by the Philippine Council for Industry, Energy, and Emerging Technology Research and Development under the Re-entry Research Program Grant and the Philippine Council for Health
Research and Development (Study Number FP 1020045) of the Department of Science and Technology, and the University of the Philippines Los Baños Office of the Vice Chancellor for Research and Extension under the Basic Research Program (Accession Code 88-E27-23). We acknowledge the technical support provided by Angelica Rose P. Sagum, Paul Ryan L. Sales, and Gayvelline C. Calacal; and the administrative support given by Miriam Ruth M. Dalet, Minerva S. Sagum, Aimee G. Cagalawan, and Rosalina N. Tandang. The guidance of Dr. Rita P. Laude in some aspects of JJRBR’s work is also acknowledged.
NOTE ON APPENDICESThe complete appendices section of the study is accessible at http://philjournsci.dost.gov.ph.
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Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
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Table I. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-001 16 13,20 13 28 25 10 13 12 10 12 14 19 14 18 24 12 24 12 12 10 18 17 35,38 20,24,26.1 38 14 36 30 22 31 49 36 11,14 53 15,16Ht-002 15 11,15 12 27 21 10 11 12 10 11 14 21 15 19 24 11 25 12 14 9 19 18 33,38 21,22.1 39 14 37 35 21 29 44 39 10.2,12,18 51 12,14Ht-003 15 12,15 12 28 25 11 13 13 10 14 14 19 15 17 22 12 25 12 11 12 15 18 39,40 20,23,25.1 35 15 38 30 22 32 51 36 12,17 56 13,16Ht-004 15 13,19 13 31 25 11 13 15 10 11 14 17 15 18 21 10 22 10 14 13 16 20 36,38 22,27.1,28 41 13 38 27 22 29 49 37 11,12,13 51 13,14Ht-005 16 11,16 13 29 23 11 11 15 10 11 14 21 16 19 21 11 23 14 12 9 16 18 37,39 22,23.1,24 38 12 34 32 17 30 44 34 11,15,16 46 15,16Ht-006 15 13,16 13 29 25 11 13 12 10 12 14 19 15 15 21 11 25 12 11 11 16 17 39,40 20,25.1,26 38 15 37 29 23 32 50 36 15,16 59 13,15Ht-007 15 15,19 13 29 25 10 13 13 10 14 14 18 16 17 21 11 23 10 12 12 17 19 36,37 20,22,24.1 40 13 37 29 21 28 46 36 11,12,14 53 12,13Ht-008 15 11,13 12 29 21 9 12 14 10 10 14 17 15 14 21 13 24 11 12 11 17 15 37 19,24.1 39 13 35 30 18 31 49 31.2 13,14 47 14Ht-009 15 15,20 13 31 25 12 13 13 10 12 14 18 16 15 21 11 23 10 12 12 17 22 36,37 21,23,27.1 41 13 38 30 22 28 48 38 12,13,14 51 13Ht-010 14 12,14 13 28 24 10 14 13 11 12 15 18 16 17 27 13 17 11 12 11 19 18 36,40 20,21,25 38 13 42 28 23 30 47 37 11,15,16 50 17Ht-011 15 13,13 12 28 23 10 14 13 10 11 14 18 18 16 19 11 23 11 12 11 20 19 37,40 23,24,25.1 38 13 37 29 19 30 47 38 12,18 50 14Ht-012 16 16,19 11 27 24 11 13 14 10 11 14 18 15 18 23 10 21 10 11 12 20 18 36,38 20,22,24.1 41 13 37 29 23 26 47 35 10,13,16 51 13,18Ht-013 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 21 11 23 13 11 11 16 18 38,40 21,23,26.1 36 15 38 30 21 31 51 38 12,15,16 57 13,16Ht-014 15 13,15 11 27 24 10 13 13 10 12 15 19 14 17 21 12 24 12 11 11 14 19 39,41 21,27.1 38 14 38 31 24 30 50 37 14,15,17 59 13,15Ht-015 17 12,14 12 28 24 10 12 14 10 12 14 17 16 13 20 12 25 11 12 11 19 19 36,40 20,26,26.1 40 13 35 30 23 28 48 36 13 50 15,16Ht-016 15 13,14 12 28 21 9 12 14 10 12 14 17 15 14 22 13 23 11 11 11 17 16 36,39 23,24.1,25 40 13 34 29 21 29 47 35 12,13,14 49 15Ht-017 15 12,13 12 28 23 10 14 13 10 13 14 18 18 17 21 12 24 11 12 12 18 16 37,38 22,24.1 37 15 38 29 21 30 50 35 11,17,19 50 14Ht-018 17 13,19 12 28 24 10 13 12 10 12 15 19 15 15 21 13 24 11 11 11 18 19 37 22,23,23.1 39 15 35 33 23 34 50 36 13 50 14Ht-019 15 12,15 12 28 24 10 13 13 10 12 15 19 16 15 22 11 24 13 11 11 15 18 39,40 20,25.1 37 14 37 30 23 31 48 40 12,16,17 58 13,16Ht-020 16 12,13 12 28 23 10 14 13 10 13 14 18 19 15 21 11 25 11 12 11 19 19 37,39 22,23 36 14 38 29 21 32 51 38 12,19,23 50 13,15Ht-021 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 21 14 23 11 11 11 19 16 36,38 20,23,26.1 38 13 34 28 18 28 46 35 13,14 50 15,17Ht-022 15 14,18 13 30 24 10 11 14 8 12 14 18 15 18 21 10 22 10 13 11 18 20 37,38 22,24.1,25 38 13 38 28 21 27 49 38 11,13 53 13,16Ht-023 15 13,13 12 27 23 10 14 13 10 12 14 18 17 15 19 12 25 11 12 11 19 16 37,39 23,24,24.1 37 13 36 29 19 32 48 38 12,13,16 51 14Ht-024 15 13,18 14 31 25 11 13 15 10 12 14 17 15 18 23 10 22 10 13 12 17 19 37,38 20,25,26.1 42 13 38 27 19 30 48 36 11,13 51 11,13Ht-025 15 13,18 14 31 25 11 13 15 10 11 14 17 16 17 21 10 22 10 12 12 17 19 35 21,26.1 42 13 38 27 19 29 48 39 12,13 51 14Ht-026 15 12,13 12 28 23 10 15 13 10 12 14 18 16 17 22 12 24 11 12 12 19 16 38,39 23,24,24.1 37 14 38 29 21 30 48 38 12,18,20 50 15,16Ht-027 17 14,19 12 28 24 11 13 12 11 11 15 20 16 17 25 10 25 11 13 12 18 17 41 25 38 14 38 31 20 34 52 36 11,14 52 15Ht-028 15 15,20 13 30 25 11 13 14 10 12 14 18 14 15 22 11 24 10 12 12 17 18 36,39 21,23.1,24 41 13 36 29 21 29 48 38 11,12,14 52 13Ht-029 15 12,18 12 28 24 10 13 13 10 13 14 19 15 17 21 12 22 13 11 11 15 20 39,40 21,25,26.1 36 15 39 30 22 31 51 39 13,16,17 59 13,14Ht-030 15 14,17 12 27 24 10 14 12 11 11 15 20 15 21 20 12 23 12 12 11 19 17 36,37 20,23.1,24 34 17 40 28 18 35 49 34 14,15,16 52 13Ht-031 15 12,15 12 29 21 9 12 14 10 11 14 17 14 14 21 13 24 11 13 11 18 15 36,38 21,24,26.1 38 13 35 29 22 29 48 36 13,14 49 15Ht-032 14 12,20 13 29 24 11 12 14 9 11 15 16 15 16 21 11 26 11 13 12 17 16 37,38 21,24.1 39 13 34 33 20 29 48 34 14,16 50 14Ht-033 15 13,13 12 28 23 10 14 13 10 11 14 17 19 16 19 12 24 11 12 11 20 19 40,41 22,23,24.1 37 13 35 30 19 29 47 38 9,20,22 50 14,15Ht-034 13 15,15.2 13 30 25 10 12 13 8 11 14 19 15 17 20 12 21 12 12 12 19 18 35,39 20,25 40 14 39 28 21 24 45 38 15,17,18 44 14Ht-035 15 12,15 12 28 23 10 14 13 11 12 15 18 17 16 30 12 23 11 12 11 20 17 37,40 19,20,27 38 13 40 30 22 31 47 36 11,16,17 50 16Ht-036 15 14,14 12 28 23 10 15 13 10 11 14 16 18 18 21 12 27 11 12 11 17 18 38,39 21,23,27.1 38 13 37 30 21 29 49 37 12,13,16 53 14,16Ht-037 16 12,14 13 31 25 11 11 13 11 11 14 20 15 16 23 13 23 12 12 10 19 20 36,37 19.1,20,25 42 15 39 33 18 31 48 37 8,15,16 50 14Ht-038 15 13,13 12 30 23 10 14 13 10 11 14 18 16 16 20 11 24 11 12 11 17 17 37,39 22,23,24.1 38 13 36 30 23 32 49 38 13,18,22 51 15,16Ht-039 15 13,13 12 28 23 10 14 13 10 11 14 18 15 16 20 12 24 11 12 11 20 17 35,39 22,24.1,25 35 14 36 27 21 31 54 38 12,17 51 12,13Ht-040 15 12,16 12 28 24 10 13 12 10 12 14 19 15 16 22 12 24 13 11 11 16 17 38,39 22,24.1 38 15 37 29 22 32 50 39 16 59 12,16Ht-041 17 13,14 12 29 23 10 14 13 10 12 14 16 15 18 21 12 27 11 13 11 17 17 38,39 21,24,26.1 36 13 38 33 19 30 50 39 11,16 52 14,15Ht-042 15 12,17 12 28 24 10 13 13 10 12 15 19 15 16 21 12 24 13 12 11 14 19 39,40 21,24.1,25.1 37 14 37 32 21 29 49 36 15 55 13,16Ht-043 15 13,15 13 30 23 10 14 12 10 12 14 19 16 16 20 12 25 11 13 11 20 18 38,39 19,22,28.1 40 13 36 29 17.2 30 48 35 14,17 50 14Ht-044 15 11,14 13 31 25 10 11 13 11 10 14 20 15 15 23 12 23 12 12 10 19 16 36,39 21,22.1,26 44 16 41 34 17 32 48 38 12,13,16 49 14,17Ht-045 15 12,12 12 28 23 10 13 12 10 13 13 19 15 17 19 12 21 12 13 10 16 18 35,36 21,22.1,24 34 14 39 32 20 31 53 32 14,15,18 59 13,14Ht-046 15 11,17 12 28 21 11 11 12 10 12 14 21 15 18 24 11 27 12 13 9 19 19 33,39 21,22.1,24 40 14 36 33 24 30 44 40 10.2,12,16 52 8,13Ht-047 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 21 14 23 11 12 11 17 16 36,41 19,24,24.1 38 13 36 31 18 29 47 35 12,15,16 50 15Ht-048 13 13,20 13 28 25 10 13 13 10 11 14 20 14 16 22 11 26 11 13 11.1 16 17 37,39 22,24,30.1 37 13 38 29 21 30 49 36 13,14,16 50 15,16Ht-049 15 12,15 12 28 23 10 13 13 10 12 15 19 16 15 22 11 24 13 11 11 15 18 39 20,24.1 35 14 36 30 22 32 49 40 13,17 58 13,16Ht-050 16 15,16 13 29 23 11 12 13 10 11 15 19 15 18 21 11 26 12 13 11 18 14 36 21,24.1 38 14 38 31 20 36 51 35 14,18 51 15Ht-051 15 13,13 12 28 23 10 13 13 10 11 14 17 19 15 19 12 24 11 13 11 16 18 36,38 20,21,22,23,23.1 38 13 35 29 20 31 48 37 10,19 52 14Ht-052 15 12,13 12 27 24 10 13 12 10 13 15 19 14 15 21 12 22 13 11 11 15 19 36,41 20,24.1 36 14 38 29 22 30 51 38 14,16,17 56 13,15Ht-053 15 12,17 12 28 24 10 13 12 10 14 14 19 15 17 21 13 24 12 11 11 15 18 37,41 21,23,26.1 38 15 40 31 23 31 51 39 13,17 59 13,14Ht-054 15 12,13 12 29 23 10 14 13 10 11 14 18 17 17 19 11 24 11 12 11 19 17 37,39 23,24,24.1 37 13 37 29 18 31 47 38 13,17,18 48 14,15Ht-055 15 13,21 13 29 24 10 13 12 10 13 15 19 15 17 21 12 27 11 12 11 18 17 38,39 20,21.1,23 41 14 40 30 22 33 53 36 12,13,15 58 15Ht-056 15 13,18 14 31 25 11 13 15 10 11 14 17 16 17 21 10 22 10 13 12 17 18 36 21,25.1 41 13 38 27 19 29 48 39 12,13 51 14Ht-057 15 12,18 14 31 25 11 13 14 10 11 14 17 15 17 22 10 22 10 13 12 17 18 36,38 21,24,26.1 42 13 36 26 21 28 48 37 11,13 52 13,14Ht-058 15 11,17 12 28 23 10 12 12 10 14 15 19 15 15 20 11 21 13 13 11 15 16 37,38 19,23,23.1 35 15 39 31 22 34 51 36 14 56 12,14Ht-059 15 14,15 13 29 24 10 11 13 9 11 14 20 15 18 20 12 27 11 13 11 18 18 39 26.1,27.1 43 13 35 31 21 26 48 38 11,12 49 15Ht-060 14 11,11 13 29 24 11 13 13 12 13 15 19 15 18 23 11 21 12 12 10 18 18 34,36 20,24,26.1 37 14 37 29 22 32 48 38 11,13,18 50 15Ht-061 16 11,16 12 28 24 10 14 13 10 12 15 19 17 17 21 12 24 12 11 11 15 18 39,40 22,23.1,27.1 38 14 37 33 23 31 50 39 14,18 57 13,16Ht-062 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 22 12 23 13 11 11 16 18 40 20,24,25.1 36 15 38 30 23 31 51 39 12,15,16 58 13,15Ht-063 16 11,17 12 28 24 10 13 12 10 12 16 19 15 13 22 11 24 12 11 11 15 18 37,39 20,24.1,26.1 39 12 37 32 22 31 49 39 12,15,17 60 14,15Ht-064 13 15,15 12 30 23 10 11 14 11 12 15 19 15 15 19 12 25 12 12 10 19 18 37,39 18.3,23,25 36 16 38 35 19 26 52 35 13,14,17 44 16,17Ht-065 16 12,19 12 31 25 10 13 12 10 11 14 19 14 18 24 12 24 11 13 10 18 17 36,37 20,23,23.1 40 14 37 30 22 33 47 36 11,12,13 53 15Ht-066 17 13,13 13 29 22 10 11 13 10 11 14 16 17 19 21 12 27 12 13 11 19 16 39,40 18,22,26.1 37 14 38 31 22 29 49 39 12,13,17 52 14,16Ht-067 14 15,20 12 29 23 10 14 12 11 12 15 20 13 17 20 12 23 11 13 11 17 18 35,38 21,24,28.1 37 16 38 28 22 36 52 38 14,15 54 13,14Ht-068 14 15,18 12 28 23 10 14 12 11 12 15 20 15 18 20 12 23 11 13 11 18 18 35,39 21,23,25.1 38 16 39 28 20 32 50 37 14,16 54 13,14Ht-069 15 12,21 12 29 24 10 13 13 10 13 14 20 14 18 21 12 25 11 13 11 18 18 36,38 22,23,25.1 39 14 37 32 23 29 53 38 13,15,16 54 14,15Ht-070 15 12,16 12 28 24 11 13 13 10 13 15 19 15 16 24 12 24 14 11 10 15 18 39 22,23.1,25.1 37 14 37 29 24 29 51 40 15,17,18 56 13Ht-071 15 13,13 12 28 23 10 14 13 10 13 15 18 16 15 21 11 24 11 11 11 16 16 37,38 22,23.1 39 14 38 29 22 30 50 39 12,15,18 51 14,15Ht-072 17 13,23 14 31 24 10 13 12 10 12 15 20 14 17 22 12 23 11 12 11 16 16 34,40 20.1,21,25 40 16 42 31 23 33 49 35 13 54 13,14Ht-073 15 13,14 12 26 22 10 14 13 10 12 14 18 15 17 20 12 26 11 12 11 18 16 35,37 20,21,23.1 37 13 37 28 19 29 48 42.2 13 49 14,16Ht-074 16 13,14 12 28 23 10 14 13 10 11 14 16 16 17 21 11 27 11 12 11 19 16 38 22,27.1 38 13 37 31 21 30 49 37 11,16,17 54 14Ht-075 16 14,14 12 27 23 10 12 15 10 13 14 17 16 14 22 12 25 11 13 11 19 16 37,39 21,23,25.1 39 13 35 30 19 28 50 39 13,14,16 50 14,16Ht-076 15 11,16 12 27 21 10 11 12 10 11 14 21 15 17 21 11 27 11 13 9 18 18 33,38 22,23,24.1 39 14 37 32 20 30 44 37 10.2,11,16 54 12,14
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
54
Table I. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-001 16 13,20 13 28 25 10 13 12 10 12 14 19 14 18 24 12 24 12 12 10 18 17 35,38 20,24,26.1 38 14 36 30 22 31 49 36 11,14 53 15,16Ht-002 15 11,15 12 27 21 10 11 12 10 11 14 21 15 19 24 11 25 12 14 9 19 18 33,38 21,22.1 39 14 37 35 21 29 44 39 10.2,12,18 51 12,14Ht-003 15 12,15 12 28 25 11 13 13 10 14 14 19 15 17 22 12 25 12 11 12 15 18 39,40 20,23,25.1 35 15 38 30 22 32 51 36 12,17 56 13,16Ht-004 15 13,19 13 31 25 11 13 15 10 11 14 17 15 18 21 10 22 10 14 13 16 20 36,38 22,27.1,28 41 13 38 27 22 29 49 37 11,12,13 51 13,14Ht-005 16 11,16 13 29 23 11 11 15 10 11 14 21 16 19 21 11 23 14 12 9 16 18 37,39 22,23.1,24 38 12 34 32 17 30 44 34 11,15,16 46 15,16Ht-006 15 13,16 13 29 25 11 13 12 10 12 14 19 15 15 21 11 25 12 11 11 16 17 39,40 20,25.1,26 38 15 37 29 23 32 50 36 15,16 59 13,15Ht-007 15 15,19 13 29 25 10 13 13 10 14 14 18 16 17 21 11 23 10 12 12 17 19 36,37 20,22,24.1 40 13 37 29 21 28 46 36 11,12,14 53 12,13Ht-008 15 11,13 12 29 21 9 12 14 10 10 14 17 15 14 21 13 24 11 12 11 17 15 37 19,24.1 39 13 35 30 18 31 49 31.2 13,14 47 14Ht-009 15 15,20 13 31 25 12 13 13 10 12 14 18 16 15 21 11 23 10 12 12 17 22 36,37 21,23,27.1 41 13 38 30 22 28 48 38 12,13,14 51 13Ht-010 14 12,14 13 28 24 10 14 13 11 12 15 18 16 17 27 13 17 11 12 11 19 18 36,40 20,21,25 38 13 42 28 23 30 47 37 11,15,16 50 17Ht-011 15 13,13 12 28 23 10 14 13 10 11 14 18 18 16 19 11 23 11 12 11 20 19 37,40 23,24,25.1 38 13 37 29 19 30 47 38 12,18 50 14Ht-012 16 16,19 11 27 24 11 13 14 10 11 14 18 15 18 23 10 21 10 11 12 20 18 36,38 20,22,24.1 41 13 37 29 23 26 47 35 10,13,16 51 13,18Ht-013 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 21 11 23 13 11 11 16 18 38,40 21,23,26.1 36 15 38 30 21 31 51 38 12,15,16 57 13,16Ht-014 15 13,15 11 27 24 10 13 13 10 12 15 19 14 17 21 12 24 12 11 11 14 19 39,41 21,27.1 38 14 38 31 24 30 50 37 14,15,17 59 13,15Ht-015 17 12,14 12 28 24 10 12 14 10 12 14 17 16 13 20 12 25 11 12 11 19 19 36,40 20,26,26.1 40 13 35 30 23 28 48 36 13 50 15,16Ht-016 15 13,14 12 28 21 9 12 14 10 12 14 17 15 14 22 13 23 11 11 11 17 16 36,39 23,24.1,25 40 13 34 29 21 29 47 35 12,13,14 49 15Ht-017 15 12,13 12 28 23 10 14 13 10 13 14 18 18 17 21 12 24 11 12 12 18 16 37,38 22,24.1 37 15 38 29 21 30 50 35 11,17,19 50 14Ht-018 17 13,19 12 28 24 10 13 12 10 12 15 19 15 15 21 13 24 11 11 11 18 19 37 22,23,23.1 39 15 35 33 23 34 50 36 13 50 14Ht-019 15 12,15 12 28 24 10 13 13 10 12 15 19 16 15 22 11 24 13 11 11 15 18 39,40 20,25.1 37 14 37 30 23 31 48 40 12,16,17 58 13,16Ht-020 16 12,13 12 28 23 10 14 13 10 13 14 18 19 15 21 11 25 11 12 11 19 19 37,39 22,23 36 14 38 29 21 32 51 38 12,19,23 50 13,15Ht-021 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 21 14 23 11 11 11 19 16 36,38 20,23,26.1 38 13 34 28 18 28 46 35 13,14 50 15,17Ht-022 15 14,18 13 30 24 10 11 14 8 12 14 18 15 18 21 10 22 10 13 11 18 20 37,38 22,24.1,25 38 13 38 28 21 27 49 38 11,13 53 13,16Ht-023 15 13,13 12 27 23 10 14 13 10 12 14 18 17 15 19 12 25 11 12 11 19 16 37,39 23,24,24.1 37 13 36 29 19 32 48 38 12,13,16 51 14Ht-024 15 13,18 14 31 25 11 13 15 10 12 14 17 15 18 23 10 22 10 13 12 17 19 37,38 20,25,26.1 42 13 38 27 19 30 48 36 11,13 51 11,13Ht-025 15 13,18 14 31 25 11 13 15 10 11 14 17 16 17 21 10 22 10 12 12 17 19 35 21,26.1 42 13 38 27 19 29 48 39 12,13 51 14Ht-026 15 12,13 12 28 23 10 15 13 10 12 14 18 16 17 22 12 24 11 12 12 19 16 38,39 23,24,24.1 37 14 38 29 21 30 48 38 12,18,20 50 15,16Ht-027 17 14,19 12 28 24 11 13 12 11 11 15 20 16 17 25 10 25 11 13 12 18 17 41 25 38 14 38 31 20 34 52 36 11,14 52 15Ht-028 15 15,20 13 30 25 11 13 14 10 12 14 18 14 15 22 11 24 10 12 12 17 18 36,39 21,23.1,24 41 13 36 29 21 29 48 38 11,12,14 52 13Ht-029 15 12,18 12 28 24 10 13 13 10 13 14 19 15 17 21 12 22 13 11 11 15 20 39,40 21,25,26.1 36 15 39 30 22 31 51 39 13,16,17 59 13,14Ht-030 15 14,17 12 27 24 10 14 12 11 11 15 20 15 21 20 12 23 12 12 11 19 17 36,37 20,23.1,24 34 17 40 28 18 35 49 34 14,15,16 52 13Ht-031 15 12,15 12 29 21 9 12 14 10 11 14 17 14 14 21 13 24 11 13 11 18 15 36,38 21,24,26.1 38 13 35 29 22 29 48 36 13,14 49 15Ht-032 14 12,20 13 29 24 11 12 14 9 11 15 16 15 16 21 11 26 11 13 12 17 16 37,38 21,24.1 39 13 34 33 20 29 48 34 14,16 50 14Ht-033 15 13,13 12 28 23 10 14 13 10 11 14 17 19 16 19 12 24 11 12 11 20 19 40,41 22,23,24.1 37 13 35 30 19 29 47 38 9,20,22 50 14,15Ht-034 13 15,15.2 13 30 25 10 12 13 8 11 14 19 15 17 20 12 21 12 12 12 19 18 35,39 20,25 40 14 39 28 21 24 45 38 15,17,18 44 14Ht-035 15 12,15 12 28 23 10 14 13 11 12 15 18 17 16 30 12 23 11 12 11 20 17 37,40 19,20,27 38 13 40 30 22 31 47 36 11,16,17 50 16Ht-036 15 14,14 12 28 23 10 15 13 10 11 14 16 18 18 21 12 27 11 12 11 17 18 38,39 21,23,27.1 38 13 37 30 21 29 49 37 12,13,16 53 14,16Ht-037 16 12,14 13 31 25 11 11 13 11 11 14 20 15 16 23 13 23 12 12 10 19 20 36,37 19.1,20,25 42 15 39 33 18 31 48 37 8,15,16 50 14Ht-038 15 13,13 12 30 23 10 14 13 10 11 14 18 16 16 20 11 24 11 12 11 17 17 37,39 22,23,24.1 38 13 36 30 23 32 49 38 13,18,22 51 15,16Ht-039 15 13,13 12 28 23 10 14 13 10 11 14 18 15 16 20 12 24 11 12 11 20 17 35,39 22,24.1,25 35 14 36 27 21 31 54 38 12,17 51 12,13Ht-040 15 12,16 12 28 24 10 13 12 10 12 14 19 15 16 22 12 24 13 11 11 16 17 38,39 22,24.1 38 15 37 29 22 32 50 39 16 59 12,16Ht-041 17 13,14 12 29 23 10 14 13 10 12 14 16 15 18 21 12 27 11 13 11 17 17 38,39 21,24,26.1 36 13 38 33 19 30 50 39 11,16 52 14,15Ht-042 15 12,17 12 28 24 10 13 13 10 12 15 19 15 16 21 12 24 13 12 11 14 19 39,40 21,24.1,25.1 37 14 37 32 21 29 49 36 15 55 13,16Ht-043 15 13,15 13 30 23 10 14 12 10 12 14 19 16 16 20 12 25 11 13 11 20 18 38,39 19,22,28.1 40 13 36 29 17.2 30 48 35 14,17 50 14Ht-044 15 11,14 13 31 25 10 11 13 11 10 14 20 15 15 23 12 23 12 12 10 19 16 36,39 21,22.1,26 44 16 41 34 17 32 48 38 12,13,16 49 14,17Ht-045 15 12,12 12 28 23 10 13 12 10 13 13 19 15 17 19 12 21 12 13 10 16 18 35,36 21,22.1,24 34 14 39 32 20 31 53 32 14,15,18 59 13,14Ht-046 15 11,17 12 28 21 11 11 12 10 12 14 21 15 18 24 11 27 12 13 9 19 19 33,39 21,22.1,24 40 14 36 33 24 30 44 40 10.2,12,16 52 8,13Ht-047 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 21 14 23 11 12 11 17 16 36,41 19,24,24.1 38 13 36 31 18 29 47 35 12,15,16 50 15Ht-048 13 13,20 13 28 25 10 13 13 10 11 14 20 14 16 22 11 26 11 13 11.1 16 17 37,39 22,24,30.1 37 13 38 29 21 30 49 36 13,14,16 50 15,16Ht-049 15 12,15 12 28 23 10 13 13 10 12 15 19 16 15 22 11 24 13 11 11 15 18 39 20,24.1 35 14 36 30 22 32 49 40 13,17 58 13,16Ht-050 16 15,16 13 29 23 11 12 13 10 11 15 19 15 18 21 11 26 12 13 11 18 14 36 21,24.1 38 14 38 31 20 36 51 35 14,18 51 15Ht-051 15 13,13 12 28 23 10 13 13 10 11 14 17 19 15 19 12 24 11 13 11 16 18 36,38 20,21,22,23,23.1 38 13 35 29 20 31 48 37 10,19 52 14Ht-052 15 12,13 12 27 24 10 13 12 10 13 15 19 14 15 21 12 22 13 11 11 15 19 36,41 20,24.1 36 14 38 29 22 30 51 38 14,16,17 56 13,15Ht-053 15 12,17 12 28 24 10 13 12 10 14 14 19 15 17 21 13 24 12 11 11 15 18 37,41 21,23,26.1 38 15 40 31 23 31 51 39 13,17 59 13,14Ht-054 15 12,13 12 29 23 10 14 13 10 11 14 18 17 17 19 11 24 11 12 11 19 17 37,39 23,24,24.1 37 13 37 29 18 31 47 38 13,17,18 48 14,15Ht-055 15 13,21 13 29 24 10 13 12 10 13 15 19 15 17 21 12 27 11 12 11 18 17 38,39 20,21.1,23 41 14 40 30 22 33 53 36 12,13,15 58 15Ht-056 15 13,18 14 31 25 11 13 15 10 11 14 17 16 17 21 10 22 10 13 12 17 18 36 21,25.1 41 13 38 27 19 29 48 39 12,13 51 14Ht-057 15 12,18 14 31 25 11 13 14 10 11 14 17 15 17 22 10 22 10 13 12 17 18 36,38 21,24,26.1 42 13 36 26 21 28 48 37 11,13 52 13,14Ht-058 15 11,17 12 28 23 10 12 12 10 14 15 19 15 15 20 11 21 13 13 11 15 16 37,38 19,23,23.1 35 15 39 31 22 34 51 36 14 56 12,14Ht-059 15 14,15 13 29 24 10 11 13 9 11 14 20 15 18 20 12 27 11 13 11 18 18 39 26.1,27.1 43 13 35 31 21 26 48 38 11,12 49 15Ht-060 14 11,11 13 29 24 11 13 13 12 13 15 19 15 18 23 11 21 12 12 10 18 18 34,36 20,24,26.1 37 14 37 29 22 32 48 38 11,13,18 50 15Ht-061 16 11,16 12 28 24 10 14 13 10 12 15 19 17 17 21 12 24 12 11 11 15 18 39,40 22,23.1,27.1 38 14 37 33 23 31 50 39 14,18 57 13,16Ht-062 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 22 12 23 13 11 11 16 18 40 20,24,25.1 36 15 38 30 23 31 51 39 12,15,16 58 13,15Ht-063 16 11,17 12 28 24 10 13 12 10 12 16 19 15 13 22 11 24 12 11 11 15 18 37,39 20,24.1,26.1 39 12 37 32 22 31 49 39 12,15,17 60 14,15Ht-064 13 15,15 12 30 23 10 11 14 11 12 15 19 15 15 19 12 25 12 12 10 19 18 37,39 18.3,23,25 36 16 38 35 19 26 52 35 13,14,17 44 16,17Ht-065 16 12,19 12 31 25 10 13 12 10 11 14 19 14 18 24 12 24 11 13 10 18 17 36,37 20,23,23.1 40 14 37 30 22 33 47 36 11,12,13 53 15Ht-066 17 13,13 13 29 22 10 11 13 10 11 14 16 17 19 21 12 27 12 13 11 19 16 39,40 18,22,26.1 37 14 38 31 22 29 49 39 12,13,17 52 14,16Ht-067 14 15,20 12 29 23 10 14 12 11 12 15 20 13 17 20 12 23 11 13 11 17 18 35,38 21,24,28.1 37 16 38 28 22 36 52 38 14,15 54 13,14Ht-068 14 15,18 12 28 23 10 14 12 11 12 15 20 15 18 20 12 23 11 13 11 18 18 35,39 21,23,25.1 38 16 39 28 20 32 50 37 14,16 54 13,14Ht-069 15 12,21 12 29 24 10 13 13 10 13 14 20 14 18 21 12 25 11 13 11 18 18 36,38 22,23,25.1 39 14 37 32 23 29 53 38 13,15,16 54 14,15Ht-070 15 12,16 12 28 24 11 13 13 10 13 15 19 15 16 24 12 24 14 11 10 15 18 39 22,23.1,25.1 37 14 37 29 24 29 51 40 15,17,18 56 13Ht-071 15 13,13 12 28 23 10 14 13 10 13 15 18 16 15 21 11 24 11 11 11 16 16 37,38 22,23.1 39 14 38 29 22 30 50 39 12,15,18 51 14,15Ht-072 17 13,23 14 31 24 10 13 12 10 12 15 20 14 17 22 12 23 11 12 11 16 16 34,40 20.1,21,25 40 16 42 31 23 33 49 35 13 54 13,14Ht-073 15 13,14 12 26 22 10 14 13 10 12 14 18 15 17 20 12 26 11 12 11 18 16 35,37 20,21,23.1 37 13 37 28 19 29 48 42.2 13 49 14,16Ht-074 16 13,14 12 28 23 10 14 13 10 11 14 16 16 17 21 11 27 11 12 11 19 16 38 22,27.1 38 13 37 31 21 30 49 37 11,16,17 54 14Ht-075 16 14,14 12 27 23 10 12 15 10 13 14 17 16 14 22 12 25 11 13 11 19 16 37,39 21,23,25.1 39 13 35 30 19 28 50 39 13,14,16 50 14,16Ht-076 15 11,16 12 27 21 10 11 12 10 11 14 21 15 17 21 11 27 11 13 9 18 18 33,38 22,23,24.1 39 14 37 32 20 30 44 37 10.2,11,16 54 12,14
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
55
Table 1. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-077 15 13,13 12 27 24 10 14 13 10 12 14 18 15 15 20 12 23 11 11 11 19 18 36,41 22,22.1 39 13 36 29 21 30 48 35 12,16,18 50 15Ht-078 16 12,14 12 28 23 10 12 14 10 11 14 19 15 15 21 12 25 11 13 11 17 17 37,40 20,23,24.1 40 13 35 30 19 27 49 34 13,14,15 50 14,15Ht-079 15 12,16 12 28 24 10 13 13 10 13 14 19 16 17 21 12 24 13 11 11 17 18 39 23,24.1,25.1 34 14 37 31 25 30 51 38 15,16,17 58 13,16Ht-080 16 13,13 12 27 23 10 14 13 10 11 14 18 17 15 19 12 24 11 12 11 18 17 38,40 23,26.1 35 14 37 29 21 29 45 34 12,17,20 51 13,14Ht-081 13 13,19 13 29 25 11 13 13 10 11 14 20 14 16 21 11 24 11 12 11.1 16 21 35,41 21.1,22,23 37 13 39 31 20 34 50 37 15 49 14,18Ht-082 15 11,16 12 28 25 10 13 13 10 13 14 19 15 17 23 12 24 12 11 11 15 17 38,39 22,25.1 37 15 41 30 22 31 49 35 14,16 57 13,16Ht-083 15 16,16 12 29 24 10 13 14 10 10 14 19 14 16 23 12 25 12 13 10 20 15 36,39 18,22.1,23 40 15 40 29 22 27 49 36 7,15,16 50 12,14Ht-084 15 13,13 12 28 22 10 15 13 10 13 14 18 17 15 20 12 24 11 12 11 19 16 37,39 24,25,25.1 38 13 36 29 20 31 49 39 9,13,16 51 14,15Ht-085 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 21 12 23 13 11 11 16 18 39,40 21,24,27.1 37 15 39 31 22 31 50 38 11,15,16 58 13,15Ht-086 15 12,17 12 28 25 11 13 12 10 12 14 19 15 16 22 12 23 13 11 11 16 18 39,40 21,24,27.1 37 15 39 30 21 31 50 39 12,15,16 58 13,15Ht-087 16 12,14 12 28 23 10 12 14 10 12 14 19 15 14 21 11 25 11 13 11 18 18 38,40 20,22.1,24 39 13 37 30 19 27 47 35 11,13,16 51 14,15Ht-088 15 12,13 12 28 23 10 14 13 10 13 14 18 17 15 23 11 24 12 12 11 18 16 37,39 21,22,24.1 37 14 37 28 22 28 49 42 11,18 50 15,17Ht-089 14 12,14 12 29 21 9 12 13 10 11 14 17 15 14 22 13 25 11 13 11 18 15 36 19,25.1 39 13 34 28 18 29 47 36 13,15 49 16Ht-090 15 12,16 13 29 24 10 13 13 10 13 14 19 15 16 24 13 24 12 11 11 15 18 39 20,23,25.1 37 16 40 29 22 31 48 38 14,17 58 13,16Ht-091 15 13,18 14 30 24 10 13 14 10 11 14 18 15 18 23 10 24 10 12 10 20 19 36 20,25.1,28 43 13 37 29 20 26 48 37 12,13,15 51 13,15Ht-092 15 13,23 12 28 25 10 14 12 10 11 15 20 15 17 21 11 23 12 12 11 20 19 37,40 21,25,25.1 39 14 36 29 20 34 48 36 11,13,16 51 13,14Ht-093 15 12,13 12 28 23 10 14 13 10 12 14 17 17 15 23 12 24 11 12 11 18 20 37,39 21,23,23.1 37 14 38 30 21 30 51 38 11,18,19 48 14,16Ht-094 16 11,15 13 32 25 10 11 13 11 10 14 22 15 16 23 13 23 12 12 10 20 21 37,39 20.1,22,24 39 15 38 34 17 31 48 37 9,14,16 52 14,15Ht-095 15 12,16 11 27 24 10 13 13 10 12 15 19 15 16 21 12 24 13 11 11 15 18 38,40 21,25.1,26.1 36 14 38 31 23 31 50 36 14,16,17 61 13,17Ht-096 17 13,15 12 29 23 10 14 13 10 11 14 16 16 18 24 12 26 11 12 11 17 17 38 18,22,27.1 38 12 35 31 22 28 50 36 11,14,19 51 14,16Ht-097 15 12,16 12 29 24 10 13 13 10 12 15 19 15 17 21 12 25 13 11 11 14 19 39 20,25.1,29.1 38 14 38 31 22 28 50 37 13,15,16 59 13,17Ht-098 15 12,16 12 28 24 10 12 13 10 14 15 19 15 17 24 12 24 12 11 11 15 17 37,38 23.1,24.1,25.1 38 14 37 31 21 30 48 39 13,17 60 14,16Ht-099 16 12,14 13 31 24 10 11 13 11 11 14 20 16 15 23 11 24 13 12 10 19 20 37,38 23,23.2,26.1 41 15 39 31 17 28 48 37 11,16,17 50 14,16Ht-100 15 12,16 12 28 24 10 13 13 10 12 15 19 15 18 22 13 24 13 11 11 14 21 40,41 21,24.1,27.1 36 14 37 31 21 32 51 37 13,17 56 14,15Ht-101 17 13,18 13 28 24 10 13 13 10 11 14 20 15 21 22 11 27 11 13 10 18 17 36,38 19,24,25.1 41 15 38 29 20 26 48 36 10,11,14 54 14,15Ht-102 15 13,13 12 28 23 10 14 13 10 11 14 18 18 16 21 11 25 11 12 11 18 15 36,38 21,24,25.1 37 14 38 29 21 31 49 37 11,17,18 50 14,15Ht-103 13 13,14 12 28 24 11 14.1 12 11 12 14 20 15 18 20 12 25 13 12 10 20 20 35,38 23,24,24.1 36 15 38 28 20 33 47 37 13,15,17 53 13Ht-104 15 12,16 12 28 24 11 13 12 10 12 14 19 15 16 21 11 25 14 11 11 16 15 39,40 20,23,25.1 37 15 36 30 27 31 51 37 13,16 59 14,15Ht-105 15 12,17 12 28 24 10 13 13 10 13 15 19 17 15 23 12 26 12 11 11 14 18 40,41 21,27.1 36 14 41 31 20 29 52 33 14,16,17 61 13,16Ht-106 15 13,17 13 30 24 11 13 14 10 12 14 18 15 17 23 11 23 10 12 12 17 20 37,38 21,24.1,25 41 13 39 31 20 26 51 37 11,12,15 50 12,16Ht-107 15 12,17 14 31 22 9 13 14 10 11 16 20 14 17 22 13 23 13 12 15 18 17 37 20,26.1 36 14 37 30 18 29 47 33 14 46 16Ht-108 15 13,18 14 31 24 12 13 14 10 12 14 18 15 17 21 10 22 10 13 13 17 19 37,38 20,24.1,26.1 41 13 37 27 23 27 47 35 11,13.1 51 13,14Ht-109 16 11,16 12 29 25 10 13 12 10 13 15 19 15 16 21 13 26 12 12 11 15 17 39,42 22,24.1,25 37 14 38 28 20 31 49 37 15,16,18 57 13,14Ht-110 15 11,18 13 29 23 10 13 12 11 10 14 20 13 16 23 12 23 11 13 9 17 15 37,39 21,22,22.1 36 13 37 33 21 31 45 36 10,13,16 49 13,14Ht-111 15 13,21 13 28 23 10 13 12 10 13 15 19 15 18 20 11 27 11 12 11 18 18 38,39 20,21.1,25 40 14 39 31 22 33 51 38 12,15 56 15,16Ht-112 15 12,15 12 29 23 10 12 14 10 12 14 17 14 14 22 11 25 11 15 11 19 16 38,39 20,24,25.1 40 13 35 30 19 28 48 33 12,14,16 49 14,15Ht-113 15 12,13 12 29 23 10 14 13 10 12 14 18 17 15 21 10 25 11 12 11 17 17 37,38 22,23 37 14 36 30 20 30 48 37 12,18,19 49 15Ht-114 16 12,15 12 28 23 10 14 13 10 12 14 16 16 19 22 12 27 11 14 11 16 18 36,38 20,24,27.1 35 14 39 32 22 29 51 36 12,14,15 51 13,15Ht-115 15 12,17 12 26 25 10 13 13 10 12 14 19 15 15 22 12 23 14 11 11 15 19 39,40 21,22.1,24 37 16 40 31 22 32 48 39 13,15,16 57 13,14Ht-116 14 12,16 12 28 24 9 14 13 10 14 15 19 16 16 21 12 24 13 10 12 15 20 38,40 22,23.1,26.1 37 15 39 30 22 30 54 36 14,16,18 54 14,15Ht-117 15 12,15 12 29 25 10 13 13 10 12 15 19 15 16 21 12 24 12 12 10 15 19 39 21,24.1,26.1 36 14 38 30 23 30 50 37 13,16,17 55 13,16Ht-118 15 13,13 12 28 22 10 15 13 10 12 14 18 17 15 19 12 24 11 12 11 19 16 37,39 24,25,25.1 38 13 36 29 20 32 49 38 9,13,16 51 14Ht-119 16 12,13 12 29 21 9 12 14 10 12 14 17 15 14 22 13 23 11 12 11 19 16 35,40 20,24.1,27 36 13 35 29 19 31 46 36 13,16,17 48 15,17Ht-120 15 12,17 12 29 24 10 13 13 10 13 15 19 15 16 22 12 25 12 11 11 15 19 38,40 21,26.1 39 14 38 32 22 30 50 37 15,16,17 57 13,16Ht-121 15 12,17 12 29 24 10 13 12 10 12 14 19 15 17 21 13 24 12 11 11 15 19 39 21,22,26.1 38 15 40 31 23 31 53 39 13,16,18 59 13,14Ht-122 15 12,15 13 29 24 10 13 13 10 13 14 19 15 16 23 12 23 13 11 11 15 17 39,40 20,23,24.1 37 15 39 31 24 30 51 39 14,16,18 58 13,17Ht-123 17 11,17 13 29 23 10 11 15 10 10 14 19 15 16 20 11 24 12 13 8 15 18 37,40 21,23,25.1 38 12 36 31 21 30 46 33 13,18,20 49 13Ht-124 17 13,14 12 28 23 10 14 13 10 12 14 16 17 17 21 12 27 12 13 11 19 17 38,39 21,22,26.1 39 13 38 30 21 31 52 37 11,15,17 51 15,17Ht-125 17 14,14 12 28 23 10 14 13 10 11 14 17 15 18 21 11 27 11 12 11 17 17 38,39 21,23.1,24 36 13 37 30 21 30 51 37 12,13,16 52 14,15Ht-126 15 12,13 12 28 23 10 14 13 10 13 14 18 18 14 21 11 25 12 12 11 18 16 37,40 22,25,26.1 36 14 38 30 21 30 49 38 12,19,20 49 14Ht-127 15 12,13 14 31 23 10 14 13 10 12 14 18 17 16 21 12 25 11 12 11 19 16 37,38 23,24.1 38 14 39 29 20 30 49 37 12,17,22 49 14,15Ht-128 15 13,14 12 30 21 9 12 13 10 12 14 17 15 15 21 14 23 11 12 11 18 16 36,39 21,24,27.1 39 13 36 29 18 28 47 35 14 49 15Ht-129 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 22 12 24 13 11 11 16 18 40 22,24,25.1 38 15 40 30 22 31 50 39 12,15,16 57 14,15Ht-130 15 12,14 12 30 23 10 12 14 10 11 14 19 15 14 21 12 25 11 13 11 17 18 37,40 21,22.1,24 40 13 38 30 19 27 47 35 9,13,16 50 14,15Ht-131 15 12,15 12 28 24 10 13 13 10 12 14 19 15 16 21 12 24 13 11 12 14 17 39 22,25.1,26.1 40 13 38 30 19 32 52 37 14,15,16 60 13,17Ht-132 15 13,13 13 29 23 10 14 13 10 10 14 18 17 17 19 12 24 11 12 11 19 17 38 21.1,22,23 39 13 36 29 19 30 47 38 12,17,19 50 14Ht-133 16 12,16 12 28 24 9 13 13 10 11 15 19 15 16 21 11 24 13 11 11 15 19 37,39 20,24.1,26.1 37 14 37 31 23 29 49 38 13,16,17 58 15,16Ht-134 15 12,15 12 29 25 10 13 13 10 13 15 19 15 17 21 12 24 12 13 11 14 19 39,40 21,25.1,26.1 37 14 38 30 21 30 52 38 15,17 58 13,15Ht-135 16 13,20 13 29 24 11 13 12 10 13 15 19 15 17 21 11 27 11 12 11 18 17 38,39 20,21.1,23 41 15 39 31 22 32 53 36 12,13,17 57 15Ht-136 15 12,18 12 28 24 10 13 12 10 12 14 19 15 16 22 11 23 13 11 11 16 18 40 21,24,25.1 37 15 39 30 21 32 50 37 12,15,16 58 13,15Ht-137 15 13,13 12 28 23 10 14 13 10 13 14 18 17 15 21 12 23 11 12 11 19 16 38 20,22,25.1 38 14 38 29 20 30 51 40 12,19 50 14Ht-138 17 14,19 12 27 24 9 13 12 11 12 15 20 15 17 20 10 24 11 12 12 19 18 35,40 20,22.1,24 38 14 36 32 20 33 54 35 11,13,14 54 15,17Ht-139 16 12,21 13 30 25 10 13 12 10 12 14 19 14 19 21 11 24 11 14 10 20 19 36,37 20,26,26.1 37 14 38 31 21 31 50 35 11,13 55 14,16Ht-140 17 12,15 12 28 23 10 14 13 10 12 14 16 18 19 22 12 25 11 14 11 16 18 37,38 20,23,28.1 36 14 39 30 22 31 51 36 12,13,17 51 14,15Ht-141 16 13,14 12 28 23 10 14 13 10 11 14 16 17 17 21 12 25 11 12 13 17 16 38 20,22,28.1 38 14 38 31 21 28 50 37 12,13,18 51 15Ht-142 16 13,14 12 29 23 10 14 13 10 12 14 16 17 19 20 12 28 11 13 11 19 16 37,40 20,21,26.1 35 13 37 31 21 28 49 38 12,13,17 52 15,16Ht-143 15 12,14 12 28 24 10 13 12 10 12 14 19 15 16 22 12 25 12 11 11 15 16 40,41 22,23,23.1 38 15 39 31 22 30 50 39 12,15,17 59 13,16Ht-144 14 12,14 12 27 23 10 14 13 12 12 15 18 15 17 28 13 17 10 12 11 19 18 36,40 20,21,27 38 13 44 28 22 29 47 37 11,16 50 16,18Ht-145 13 11,13 13 29 23 10 13 13 12 12 15 19 15 17 23 13 22 12 13 10 17 18 36 21,24.1,25 37 14 37 29 21 29 47 34 11,14,16 48 13,14Ht-146 15 12,16 12 28 24 10 13 13 10 12 14 19 15 16 21 12 25 13 11 11 15 19 39,41 22,26.1 37 15 38 31 24 33 51 37 17,18 58 13,14Ht-147 15 12,16 12 28 23 10 12 12 10 12 14 19 16 18 19 11 21 11 12 11 16 21 37,39 18,25,27.1 39 15 39 30 22 34 52 38 16,17 55 13,15Ht-148 15 12,13 13 30 23 10 15 13 10 13 14 17 19 15 21 11 25 11 13 11 18 17 37,38 22,23,24.1 35 14 38 29 21 31 49 38 12,16,18 50 14,15Ht-149 17 12,17 14 30 24 10 13 14 10 11 14 18 15 16 21 12 24 11 12 11 21 17 39,41 18,24,24.1 38 14 35 29 21 28 47 35 15,15.3,16 53 13,15Ht-150 15 13,13 12 28 23 10 12 13 10 11 14 18 18 15 19 12 24 11 13 11 18 17 39,40 22,23,24.1 38 13 36 29 20 30 47 37 10,18,20 51 14,15Ht-151 15 13,18 12 28 24 10 12 12 10 12 15 20 15 18 19 12 20 11 12 12 16 18 36,38 20,23,26.1 37 15 39 31 23 34 47 36 15,19 55 15,16Ht-152 16 12,17 14 31 22 9 13 14 10 11 16 20 14 18 21 13 22 12 12 14 19 15 36,38 19,21,24.1 39 14 37 30 18 28 51 35 12,14,18 46 14,18
Table I. continuation . . . .
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
56
Table 1. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-077 15 13,13 12 27 24 10 14 13 10 12 14 18 15 15 20 12 23 11 11 11 19 18 36,41 22,22.1 39 13 36 29 21 30 48 35 12,16,18 50 15Ht-078 16 12,14 12 28 23 10 12 14 10 11 14 19 15 15 21 12 25 11 13 11 17 17 37,40 20,23,24.1 40 13 35 30 19 27 49 34 13,14,15 50 14,15Ht-079 15 12,16 12 28 24 10 13 13 10 13 14 19 16 17 21 12 24 13 11 11 17 18 39 23,24.1,25.1 34 14 37 31 25 30 51 38 15,16,17 58 13,16Ht-080 16 13,13 12 27 23 10 14 13 10 11 14 18 17 15 19 12 24 11 12 11 18 17 38,40 23,26.1 35 14 37 29 21 29 45 34 12,17,20 51 13,14Ht-081 13 13,19 13 29 25 11 13 13 10 11 14 20 14 16 21 11 24 11 12 11.1 16 21 35,41 21.1,22,23 37 13 39 31 20 34 50 37 15 49 14,18Ht-082 15 11,16 12 28 25 10 13 13 10 13 14 19 15 17 23 12 24 12 11 11 15 17 38,39 22,25.1 37 15 41 30 22 31 49 35 14,16 57 13,16Ht-083 15 16,16 12 29 24 10 13 14 10 10 14 19 14 16 23 12 25 12 13 10 20 15 36,39 18,22.1,23 40 15 40 29 22 27 49 36 7,15,16 50 12,14Ht-084 15 13,13 12 28 22 10 15 13 10 13 14 18 17 15 20 12 24 11 12 11 19 16 37,39 24,25,25.1 38 13 36 29 20 31 49 39 9,13,16 51 14,15Ht-085 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 21 12 23 13 11 11 16 18 39,40 21,24,27.1 37 15 39 31 22 31 50 38 11,15,16 58 13,15Ht-086 15 12,17 12 28 25 11 13 12 10 12 14 19 15 16 22 12 23 13 11 11 16 18 39,40 21,24,27.1 37 15 39 30 21 31 50 39 12,15,16 58 13,15Ht-087 16 12,14 12 28 23 10 12 14 10 12 14 19 15 14 21 11 25 11 13 11 18 18 38,40 20,22.1,24 39 13 37 30 19 27 47 35 11,13,16 51 14,15Ht-088 15 12,13 12 28 23 10 14 13 10 13 14 18 17 15 23 11 24 12 12 11 18 16 37,39 21,22,24.1 37 14 37 28 22 28 49 42 11,18 50 15,17Ht-089 14 12,14 12 29 21 9 12 13 10 11 14 17 15 14 22 13 25 11 13 11 18 15 36 19,25.1 39 13 34 28 18 29 47 36 13,15 49 16Ht-090 15 12,16 13 29 24 10 13 13 10 13 14 19 15 16 24 13 24 12 11 11 15 18 39 20,23,25.1 37 16 40 29 22 31 48 38 14,17 58 13,16Ht-091 15 13,18 14 30 24 10 13 14 10 11 14 18 15 18 23 10 24 10 12 10 20 19 36 20,25.1,28 43 13 37 29 20 26 48 37 12,13,15 51 13,15Ht-092 15 13,23 12 28 25 10 14 12 10 11 15 20 15 17 21 11 23 12 12 11 20 19 37,40 21,25,25.1 39 14 36 29 20 34 48 36 11,13,16 51 13,14Ht-093 15 12,13 12 28 23 10 14 13 10 12 14 17 17 15 23 12 24 11 12 11 18 20 37,39 21,23,23.1 37 14 38 30 21 30 51 38 11,18,19 48 14,16Ht-094 16 11,15 13 32 25 10 11 13 11 10 14 22 15 16 23 13 23 12 12 10 20 21 37,39 20.1,22,24 39 15 38 34 17 31 48 37 9,14,16 52 14,15Ht-095 15 12,16 11 27 24 10 13 13 10 12 15 19 15 16 21 12 24 13 11 11 15 18 38,40 21,25.1,26.1 36 14 38 31 23 31 50 36 14,16,17 61 13,17Ht-096 17 13,15 12 29 23 10 14 13 10 11 14 16 16 18 24 12 26 11 12 11 17 17 38 18,22,27.1 38 12 35 31 22 28 50 36 11,14,19 51 14,16Ht-097 15 12,16 12 29 24 10 13 13 10 12 15 19 15 17 21 12 25 13 11 11 14 19 39 20,25.1,29.1 38 14 38 31 22 28 50 37 13,15,16 59 13,17Ht-098 15 12,16 12 28 24 10 12 13 10 14 15 19 15 17 24 12 24 12 11 11 15 17 37,38 23.1,24.1,25.1 38 14 37 31 21 30 48 39 13,17 60 14,16Ht-099 16 12,14 13 31 24 10 11 13 11 11 14 20 16 15 23 11 24 13 12 10 19 20 37,38 23,23.2,26.1 41 15 39 31 17 28 48 37 11,16,17 50 14,16Ht-100 15 12,16 12 28 24 10 13 13 10 12 15 19 15 18 22 13 24 13 11 11 14 21 40,41 21,24.1,27.1 36 14 37 31 21 32 51 37 13,17 56 14,15Ht-101 17 13,18 13 28 24 10 13 13 10 11 14 20 15 21 22 11 27 11 13 10 18 17 36,38 19,24,25.1 41 15 38 29 20 26 48 36 10,11,14 54 14,15Ht-102 15 13,13 12 28 23 10 14 13 10 11 14 18 18 16 21 11 25 11 12 11 18 15 36,38 21,24,25.1 37 14 38 29 21 31 49 37 11,17,18 50 14,15Ht-103 13 13,14 12 28 24 11 14.1 12 11 12 14 20 15 18 20 12 25 13 12 10 20 20 35,38 23,24,24.1 36 15 38 28 20 33 47 37 13,15,17 53 13Ht-104 15 12,16 12 28 24 11 13 12 10 12 14 19 15 16 21 11 25 14 11 11 16 15 39,40 20,23,25.1 37 15 36 30 27 31 51 37 13,16 59 14,15Ht-105 15 12,17 12 28 24 10 13 13 10 13 15 19 17 15 23 12 26 12 11 11 14 18 40,41 21,27.1 36 14 41 31 20 29 52 33 14,16,17 61 13,16Ht-106 15 13,17 13 30 24 11 13 14 10 12 14 18 15 17 23 11 23 10 12 12 17 20 37,38 21,24.1,25 41 13 39 31 20 26 51 37 11,12,15 50 12,16Ht-107 15 12,17 14 31 22 9 13 14 10 11 16 20 14 17 22 13 23 13 12 15 18 17 37 20,26.1 36 14 37 30 18 29 47 33 14 46 16Ht-108 15 13,18 14 31 24 12 13 14 10 12 14 18 15 17 21 10 22 10 13 13 17 19 37,38 20,24.1,26.1 41 13 37 27 23 27 47 35 11,13.1 51 13,14Ht-109 16 11,16 12 29 25 10 13 12 10 13 15 19 15 16 21 13 26 12 12 11 15 17 39,42 22,24.1,25 37 14 38 28 20 31 49 37 15,16,18 57 13,14Ht-110 15 11,18 13 29 23 10 13 12 11 10 14 20 13 16 23 12 23 11 13 9 17 15 37,39 21,22,22.1 36 13 37 33 21 31 45 36 10,13,16 49 13,14Ht-111 15 13,21 13 28 23 10 13 12 10 13 15 19 15 18 20 11 27 11 12 11 18 18 38,39 20,21.1,25 40 14 39 31 22 33 51 38 12,15 56 15,16Ht-112 15 12,15 12 29 23 10 12 14 10 12 14 17 14 14 22 11 25 11 15 11 19 16 38,39 20,24,25.1 40 13 35 30 19 28 48 33 12,14,16 49 14,15Ht-113 15 12,13 12 29 23 10 14 13 10 12 14 18 17 15 21 10 25 11 12 11 17 17 37,38 22,23 37 14 36 30 20 30 48 37 12,18,19 49 15Ht-114 16 12,15 12 28 23 10 14 13 10 12 14 16 16 19 22 12 27 11 14 11 16 18 36,38 20,24,27.1 35 14 39 32 22 29 51 36 12,14,15 51 13,15Ht-115 15 12,17 12 26 25 10 13 13 10 12 14 19 15 15 22 12 23 14 11 11 15 19 39,40 21,22.1,24 37 16 40 31 22 32 48 39 13,15,16 57 13,14Ht-116 14 12,16 12 28 24 9 14 13 10 14 15 19 16 16 21 12 24 13 10 12 15 20 38,40 22,23.1,26.1 37 15 39 30 22 30 54 36 14,16,18 54 14,15Ht-117 15 12,15 12 29 25 10 13 13 10 12 15 19 15 16 21 12 24 12 12 10 15 19 39 21,24.1,26.1 36 14 38 30 23 30 50 37 13,16,17 55 13,16Ht-118 15 13,13 12 28 22 10 15 13 10 12 14 18 17 15 19 12 24 11 12 11 19 16 37,39 24,25,25.1 38 13 36 29 20 32 49 38 9,13,16 51 14Ht-119 16 12,13 12 29 21 9 12 14 10 12 14 17 15 14 22 13 23 11 12 11 19 16 35,40 20,24.1,27 36 13 35 29 19 31 46 36 13,16,17 48 15,17Ht-120 15 12,17 12 29 24 10 13 13 10 13 15 19 15 16 22 12 25 12 11 11 15 19 38,40 21,26.1 39 14 38 32 22 30 50 37 15,16,17 57 13,16Ht-121 15 12,17 12 29 24 10 13 12 10 12 14 19 15 17 21 13 24 12 11 11 15 19 39 21,22,26.1 38 15 40 31 23 31 53 39 13,16,18 59 13,14Ht-122 15 12,15 13 29 24 10 13 13 10 13 14 19 15 16 23 12 23 13 11 11 15 17 39,40 20,23,24.1 37 15 39 31 24 30 51 39 14,16,18 58 13,17Ht-123 17 11,17 13 29 23 10 11 15 10 10 14 19 15 16 20 11 24 12 13 8 15 18 37,40 21,23,25.1 38 12 36 31 21 30 46 33 13,18,20 49 13Ht-124 17 13,14 12 28 23 10 14 13 10 12 14 16 17 17 21 12 27 12 13 11 19 17 38,39 21,22,26.1 39 13 38 30 21 31 52 37 11,15,17 51 15,17Ht-125 17 14,14 12 28 23 10 14 13 10 11 14 17 15 18 21 11 27 11 12 11 17 17 38,39 21,23.1,24 36 13 37 30 21 30 51 37 12,13,16 52 14,15Ht-126 15 12,13 12 28 23 10 14 13 10 13 14 18 18 14 21 11 25 12 12 11 18 16 37,40 22,25,26.1 36 14 38 30 21 30 49 38 12,19,20 49 14Ht-127 15 12,13 14 31 23 10 14 13 10 12 14 18 17 16 21 12 25 11 12 11 19 16 37,38 23,24.1 38 14 39 29 20 30 49 37 12,17,22 49 14,15Ht-128 15 13,14 12 30 21 9 12 13 10 12 14 17 15 15 21 14 23 11 12 11 18 16 36,39 21,24,27.1 39 13 36 29 18 28 47 35 14 49 15Ht-129 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 22 12 24 13 11 11 16 18 40 22,24,25.1 38 15 40 30 22 31 50 39 12,15,16 57 14,15Ht-130 15 12,14 12 30 23 10 12 14 10 11 14 19 15 14 21 12 25 11 13 11 17 18 37,40 21,22.1,24 40 13 38 30 19 27 47 35 9,13,16 50 14,15Ht-131 15 12,15 12 28 24 10 13 13 10 12 14 19 15 16 21 12 24 13 11 12 14 17 39 22,25.1,26.1 40 13 38 30 19 32 52 37 14,15,16 60 13,17Ht-132 15 13,13 13 29 23 10 14 13 10 10 14 18 17 17 19 12 24 11 12 11 19 17 38 21.1,22,23 39 13 36 29 19 30 47 38 12,17,19 50 14Ht-133 16 12,16 12 28 24 9 13 13 10 11 15 19 15 16 21 11 24 13 11 11 15 19 37,39 20,24.1,26.1 37 14 37 31 23 29 49 38 13,16,17 58 15,16Ht-134 15 12,15 12 29 25 10 13 13 10 13 15 19 15 17 21 12 24 12 13 11 14 19 39,40 21,25.1,26.1 37 14 38 30 21 30 52 38 15,17 58 13,15Ht-135 16 13,20 13 29 24 11 13 12 10 13 15 19 15 17 21 11 27 11 12 11 18 17 38,39 20,21.1,23 41 15 39 31 22 32 53 36 12,13,17 57 15Ht-136 15 12,18 12 28 24 10 13 12 10 12 14 19 15 16 22 11 23 13 11 11 16 18 40 21,24,25.1 37 15 39 30 21 32 50 37 12,15,16 58 13,15Ht-137 15 13,13 12 28 23 10 14 13 10 13 14 18 17 15 21 12 23 11 12 11 19 16 38 20,22,25.1 38 14 38 29 20 30 51 40 12,19 50 14Ht-138 17 14,19 12 27 24 9 13 12 11 12 15 20 15 17 20 10 24 11 12 12 19 18 35,40 20,22.1,24 38 14 36 32 20 33 54 35 11,13,14 54 15,17Ht-139 16 12,21 13 30 25 10 13 12 10 12 14 19 14 19 21 11 24 11 14 10 20 19 36,37 20,26,26.1 37 14 38 31 21 31 50 35 11,13 55 14,16Ht-140 17 12,15 12 28 23 10 14 13 10 12 14 16 18 19 22 12 25 11 14 11 16 18 37,38 20,23,28.1 36 14 39 30 22 31 51 36 12,13,17 51 14,15Ht-141 16 13,14 12 28 23 10 14 13 10 11 14 16 17 17 21 12 25 11 12 13 17 16 38 20,22,28.1 38 14 38 31 21 28 50 37 12,13,18 51 15Ht-142 16 13,14 12 29 23 10 14 13 10 12 14 16 17 19 20 12 28 11 13 11 19 16 37,40 20,21,26.1 35 13 37 31 21 28 49 38 12,13,17 52 15,16Ht-143 15 12,14 12 28 24 10 13 12 10 12 14 19 15 16 22 12 25 12 11 11 15 16 40,41 22,23,23.1 38 15 39 31 22 30 50 39 12,15,17 59 13,16Ht-144 14 12,14 12 27 23 10 14 13 12 12 15 18 15 17 28 13 17 10 12 11 19 18 36,40 20,21,27 38 13 44 28 22 29 47 37 11,16 50 16,18Ht-145 13 11,13 13 29 23 10 13 13 12 12 15 19 15 17 23 13 22 12 13 10 17 18 36 21,24.1,25 37 14 37 29 21 29 47 34 11,14,16 48 13,14Ht-146 15 12,16 12 28 24 10 13 13 10 12 14 19 15 16 21 12 25 13 11 11 15 19 39,41 22,26.1 37 15 38 31 24 33 51 37 17,18 58 13,14Ht-147 15 12,16 12 28 23 10 12 12 10 12 14 19 16 18 19 11 21 11 12 11 16 21 37,39 18,25,27.1 39 15 39 30 22 34 52 38 16,17 55 13,15Ht-148 15 12,13 13 30 23 10 15 13 10 13 14 17 19 15 21 11 25 11 13 11 18 17 37,38 22,23,24.1 35 14 38 29 21 31 49 38 12,16,18 50 14,15Ht-149 17 12,17 14 30 24 10 13 14 10 11 14 18 15 16 21 12 24 11 12 11 21 17 39,41 18,24,24.1 38 14 35 29 21 28 47 35 15,15.3,16 53 13,15Ht-150 15 13,13 12 28 23 10 12 13 10 11 14 18 18 15 19 12 24 11 13 11 18 17 39,40 22,23,24.1 38 13 36 29 20 30 47 37 10,18,20 51 14,15Ht-151 15 13,18 12 28 24 10 12 12 10 12 15 20 15 18 19 12 20 11 12 12 16 18 36,38 20,23,26.1 37 15 39 31 23 34 47 36 15,19 55 15,16Ht-152 16 12,17 14 31 22 9 13 14 10 11 16 20 14 18 21 13 22 12 12 14 19 15 36,38 19,21,24.1 39 14 37 30 18 28 51 35 12,14,18 46 14,18
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
57
Table 1. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-153 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 21 13 23 11 12 11 19 15 36,39 19,24.1,25 41 13 35 31 20 27 45 36 14 49 15Ht-154 15 12,16 12 28 24 10 14 13 10 14 15 19 15 16 22 12 24 13 10 12 15 19 38,41 21,24.1,25.1 38 14 38 31 24 30 51 38 15,17 55 13,15Ht-155 15 13,15 12 31 23 10 14 13 10 11 14 18 17 13 21 12 25 11 12 10 19 15 37,40 23,24,26.1 39 13 35 29 21 31 48 37 12,17,19 49 13,14Ht-156 15 13,15 12 31 23 10 14 13 10 11 14 18 17 13 23 12 24 11 12 10 19 15 38,40 22,23,27.1 38 13 35 30 21 30 50 37 12,15,20 49 13,14Ht-157 17 13,14 12 28 23 10 14 14 10 12 14 16 17 17 21 11 26 11 13 11 18 16 37,38 19,23.1,24 36 13 37 31 21 29 51 37 12,15,18 51 14,15Ht-158 15 13,14 12 29 25 10 14 13 10 11 14 18 16 16 19 12 25 11 13 11 19 17 37,39 22,27.1 38 13 35 29 22 33 48 37 11,18 49 14Ht-159 15 14,14 12 28 23 10 14 13 10 11 14 16 16 18 21 12 26 11 12 11 18 16 38 20,24,27.1 34 13 37 31 21 31 51 40 12,17 49 14Ht-160 15 13,15 13 30 23 11 13 13 10 11 16 19 15 15 24 14 25 11 13 12 19 16 37,39 19,22,23 41 13 32 31 20 33 49 36 13,14 46 12,15Ht-161 15 12,19 13 30 25 11 13 15 10 11 14 18 15 18 22 10 22 10 13 13 17 19 36,38 21,24,24.1 42 13 38 27 22 27 46 35 11,13,14 51 13,15Ht-162 12 13,18 13 30 23 10 13 13 8 12 15 20 15 19 20 12 23 11 13 12 16 19 35,39 22,24.1,25 41 12 38 29 22 30 51 36 14,16 50 14Ht-163 15 13,18 12 28 24 10 14 12 11 12 14 20 15 17 20 12 23 12 12 11 19 20 36,38 19,24,24.1 34 16 40 28 19 34 49 36 13,16 53 13Ht-164 15 12,16 12 27 24 10 13 13 10 12 16 19 15 13 21 11 25 12 11 11 14 18 38,40 20,21.1,24.1 37 12 36 31 21 30 49 38 13,16 60 14,15Ht-165 15 12,15 12 28 24 10 13 13 10 12 15 19 16 15 22 11 24 13 11 11 15 17 38,41 21,25.1 38 14 38 30 24 31 49 39 13,16,17 58 13,16Ht-166 15 15,19 14 30 26 10 13 14 10 11 14 18 16 14 21 11 23 11 12 13 16 19 37 21,25,25.1 41 13 38 30 23 29 49 36 11,13,15 50 13Ht-167 15 12,16 12 28 24 11 13 12 10 13 14 19 15 15 21 12 25 12 11 11 16 18 38,40 21,24,27.1 38 15 39 31 22 31 50 37 13,15,17 58 13,16Ht-168 16 12,18 13 31 24 10 13 12 10 11 15 19 15 17 22 12 22 11 15 10 18 18 36,41 21,24,24.1 40 14 37 30 20 32 48 37 13,14 49 14,16Ht-169 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 22 12 23 13 11 11 16 17 40 21,25,25.1 37 15 40 30 22 31 51 38 12,15,16 59 13,15Ht-170 14 12,17 12 28 24 10 14 13 11 13 15 20 15 18 20 12 23 11 12 12 17 19 36,39 19,24,25.1 35 15 39 30 18 32 49 36 11,14,16 48 13,14Ht-171 15 13,18 13 29 25 11 13 14 10 12 14 19 15 16 21 10 24 10 12 12 17 20 38 24.1,26 42 13 36 32 22 27 49 38 12,14 51 17Ht-172 15 12,17 12 28 24 10 13 13 10 11 15 19 15 17 21 12 26 12 11 11 15 19 38,39 21,23.1,27.1 37 14 38 30 21 32 48 36 12,16,18 56 13,16Ht-173 15 12,17 12 28 24 12 13 12 10 12 14 19 15 16 22 12 23 12 11 11 16 18 40 21,24,25.1 37 15 38 30 22 31 51 38 11,15,16 58 13,16Ht-174 15 12,15 12 29 24 10 13 13 10 13 15 19 15 17 22 12 24 14 11 11 15 18 39,40 21,26.1,28.1 37 14 39 32 25 30 50 37 14,15,17 59 13,15Ht-175 13 16,19 13 30 23 10 11 13 10 12 14 20 17 15 22 12 23 12 13 12 19 18 35,38 19,24,24.1 39 13 34 27 22 31 49 37 16,17,19 49 16,17Ht-176 15 13,13 12 28 23 10 14 13 10 13 14 18 16 15 21 12 24 11 12 11 19 16 38 20,23,25.1 37 14 38 29 19 30 50 38 12,19,20 50 14,15Ht-177 15 12,16 12 29 24 11 14 13 10 13 15 19 15 17 24 12 23 12 11 11 15 19 38,41 21,23.1,24.1 37 13 37 31 24 30 48 38 14,16,17 59 13,15Ht-178 15 14,14 12 29 23 10 14 13 10 11 14 16 17 17 20 11 26 11 12 11 18 17 38 21,22,27.1 36 13 37 30 21 30 49 38 12,13,17 54 14,16Ht-179 17 13,19 13 28 26 10 13 12 10 12 14 19 15 21 23 13 24 11 12 10 18 18 36,38 20,24,26.1 37 14 36 30 22 29 50 35 11,12,13 53 13,16Ht-180 15 12,17 12 29 24 11 13 12 10 12 14 19 15 15 21 12 24 13 11 11 13 16 39,40 21,24,25.1 35 15 39 30 23 31 50 39 13,15 60 13,16Ht-181 15 12,15 12 29 25 10 13 14 10 12 15 19 15 16 21 12 24 12 12 11 15 19 39 21,24.1,26.1 37 14 39 30 23 31 52 37 13,15,16 55 13,16Ht-182 14 15,15.2 13 30 25 10 12 12 8 11 14 19 15 16 20 13 21 11 12 12 19 17 35,39 22,24,28 41 14 37 28 20 23 46 37 13,18 43 14Ht-183 12 13,18 14 31 24 10 13 13 10 12 15 20 15 17 21 11 24 11 12 12 15 18 36,39 21,24,24.1 40 12 36 28 23 30 49 36 14,15 49 15,16Ht-184 14 11,14 13 29 24 11 13 13 12 11 14 18 15 16 23 11 23 11 12 10 17 17 35,36 20,25,27.1 37 14 37 29 23 29 48 39 11,16 50 13,14Ht-185 15 12,12 12 27 24 11 13 13 10 12 14 19 15 15 21 12 25 12 11 11 15 17 39 21,22,27.1 36 15 38 32 23 30 48 37 13,15 59 13,16Ht-186 16 13,14 13 29 23 10 14 13 11 11 14 16 17 18 21 13 27 11 12 11 18 16 37,38 21,25,27.1 40 13 37 32 20 29 50 38 12,15,16 52 15Ht-187 15 12,18 12 28 23 10 13 13 10 13 14 19 15 16 21 13 23 12 11 11 15 20 39 22,25,25.1 38 15 39 30 24 32 51 37 15,16,17 58 13,14Ht-188 15 12,16 12 28 24 10 13 13 10 13 14 19 14 16 24 12 25 13 12 11 15 19 39,40 20,23,25.1 37 15 39 29 22 31 48 36 13,15,16 57 14,16Ht-189 15 13,14,16 12 28 24 10 11 12 9 12 16 19 15 19 21 11 23 10 12 9 17 16 40 18,25.1 39 12 34 29 22 29 50 37 11,13,18 48 10Ht-190 13 15,16.2 13 30 25 10 12 12 8 11 14 19 15 16 20 12 21 12 13 12 19 17 35,39 21,24 42 13 36 28 20 23 46 37 14,18,20 43 13,14Ht-191 15 12,13 12 28 23 10 15 13 10 12 14 18 17 14 23 11 24 11 14 11 18 16 37 22,22.1 37 14 39 30 21 30 49 39 12,17,19 50 14,15Ht-192 15 13,17 14 31 24 11 13 15 10 12 14 18 15 18 21 10 22 10 13 13 17 18 37,39 20,26.1 43 13 37 27 23 27 48 35 11,13,13.1 51 13,14Ht-193 15 12,16 14 31 24 10 13 14 10 11 14 18 16 15 21 12 23 11 12 11 20 19 40 24.1 38 14 35 29 20 29 49 35 15.3,16 53 14Ht-194 15 11,15 12 28 21 10 11 12 10 11 14 21 15 17 24 11 26 12 13 9 19 17 33,38 20,21,22,23.1 40 14 37 33 19 29 43 39 9.2,13,17 52 12,15Ht-195 15 13,18 14 30 24 10 14 15 10 11 14 17 15 18 22 10 23 9 13 12 17 19 36,37 20,27,27.1 42 13 36 27 21 28 49 38 11,12,13 54 13,15Ht-196 14 13,14 14 31 24 11 14 13 9 13 14 20 14 20 21 12 28 12 12 11 17 19 36 21,22,24 41 13 37 30 19 33 45 34 10,14,17 49 11,15Ht-197 15 12,16 12 28 24 11 13 12 10 13 14 19 15 16 22 12 25 13 11 11 13 17 39,40 20,23,25.1 36 15 38 30 22 32 49 39 13,15 60 13,16Ht-198 15 13,14 14 31 25 11 11 13 9 12 14 21 15 16 23 12 27 12 11 13 16 18 37,38 21,22 36 12 36 30 19 29 46 39 12,15,17 51 15,17Ht-199 15 12,16 12 28 24 11 13 12 10 13 14 19 15 15 21 11 25 13 11 11 16 17 39,40 20,24,25.1 37 14 36 30 23 32 50 36 14,15 60 13,15Ht-200 15 12,16 12 28 24 10 14 13 10 13 15 19 15 16 22 12 24 12 10 12 15 21 38,41 22,25.1 37 14 38 30 24 30 51 37 15,17,18 55 13,16Ht-201 13 15,15 12 30 23 10 11 13 11 12 15 19 14 16 19 12 25 12 12 10 18 19 36,39 18.2,23,25 37 16 38 34 18 26 52 35 13,14,17 44 16,17Ht-202 15 12,16 12 28 24 10 13 13 10 13 15 19 16 16 24 12 24 12 11 11 15 19 39,40 20,25.1,26.1 38 14 39 31 21 28 52 37 14,16 60 13,16Ht-203 15 12,16 12 28 24 10 13 13 11 14 15 19 16 17 22 11 24 12 11 11 15 20 40 21,25.1 37 14 40 31 21 30 55 38 13,15,16 59 13,17Ht-204 15 11,16 12 28 21 10 11 12 10 11 14 21 14 18 22 11 29 11 13 9 19 19 33,38 22,23,28.1 39 14 37 33 21 31 44 40 9.2,12,16 51 12,15Ht-205 15 12,17 12 28 24 11 13 12 10 12 14 19 15 15 22 13 23 13 11 11 16 18 40 21,22,26.1 37 15 39 30 23 31 50 37 12,15,16 57 13,15Ht-206 15 12,17 12 28 25 10 13 13 10 13 14 19 15 16 21 11 24 13 11 11 16 18 39,43 21,24,24.1 36 15 39 30 22 31 50 38 14,16,17 59 14,17Ht-207 15 13,15 12 28 24 11 13 15 10 12 14 19 15 16 22 12 25 13 10 11 15 19 40,41 20,23,23.1 38 15 39 30 26 28 50 40 12,16 55 13,15Ht-208 15 12,16 11 27 24 10 13 13 10 12 15 19 15 16 21 12 24 13 11 11 13 18 39,41 20,26.1,28.1 38 14 38 30 24 30 49 37 15,16,17 60 13,16Ht-209 12 13,17 14 31 24 10 13 13 10 13 15 20 15 18 21 11 23 11 12 12 15 17 36,39 20,25.1,26 39 12 37 28 23 30 50 36 14,15,16 49 14,16Ht-210 15 11,17 13 30 23 10 11 15 10 11 14 22 16 16 21 11 25 13 12 9 16 19 39 21,24,26.1 38 12 36 33 22 30 48 35 12,16,19 47 15,17Ht-211 15 12,20 12 29 25 10 13 13 10 12 14 20 16 18 21 13 25 12 12 11 20 19 37 23,24 40 14 36 33 22 31 56 38 14,15,16 53 14,16Ht-212 15 12,20 12 28 23 10 13 13 10 11 14 20 14 18 21 12 25 11 12 11 19 18 36,37 21,22.1,24 39 14 36 31 22 30 49 36 13,16,17 56 14,15Ht-213 15 12,12 12 29 24 10 13 13 10 12 15 19 15 16 23 12 24 12 11 11 15 20 38,39 19,24.1,25.1 37 14 38 31 22 30 47 37 13,16,17 60 15,16Ht-214 13 15,15.2 13 30 25 10 12 12 8 12 14 19 15 18 20 12 21 11 13 12 19 18 37,40 22,24,26 40 14 37 29 19 23 48 38 15,17,18 44 13,14Ht-215 13 11,12 13 31 22 10 14 14 10 12 14 20 16 14.1 21 11 22 12 12 10 19 19 37 21.1 38 13 35 30 21 29 45 35 9,12,15 49 19Ht-216 15 12,20 13 29 23 10 13 13 9 12 15 16 15 16 21 11 27 11 13 12 18 16 37 20,26.1 39 14 36 33 21 29 47 33 14,15 50 14,15Ht-217 16 12,19 12 30 24 10 13 13 10 11 14 21 15 18 21 12 25 11 12 11 19 17 36,37 22,23.1,25 38 15 38 31 23 33 50 39 13,15 53 14,15Ht-218 15 13,15 12 28 23 10 14 13 10 11 14 16 17 16 21 11 26 11 12 11 20 17 36,38 21,22,29.1 36 13 37 30 21 29 50 38 12,13,16 49 16Ht-219 15 12,16 12 27 24 10 13 13 10 13 16 19 15 13 21 12 24 12 12 11 14 20 39 22,23.1,24.1 37 12 35 30 20 30 47 37 13,16,19 60 15Ht-220 15 12,13 12 28 24 10 13 14 10 12 14 19 15 16 21 12 23 13 11 11 15 20 39 21,23,25.1 38 15 40 31 23 31 47 39 11,16 60 13,16Ht-221 15 12,15 12 29 21 9 12 14 10 11 14 17 15 15 21 12 23 11 12 11 17 15 36,40 21,24,26.1 41 13 37 29 17 27 47 37 12,14,16 48 14,17Ht-222 15 12,17 12 29 23 10 13 13 10 12 14 19 16 16 21 12 22 11 11 11 16 20 38,40 22,23,23.1 36 15 39 31 25 31 53 39 13,16,17 56 13,15Ht-223 14 15,19 12 28 23 10 14 12 11 12 15 20 15 16 20 12 23 11 13 11 17 18 35,39 20,23,27.1 37 16 39 28 20 33 51 38 13,14,15 54 14Ht-224 14 13,16 12 28 23 9 11 12 9 11 15 20 15 17 21 11 23 11 12 10 17 18 36,40 21,22,24.1 40 14 36 32 20 30 48 37 11,13,16 47 13,15Ht-225 15 12,17 12 27 23 10 15 13 11 10 14 17 17 15 21 11 23 12 12 11 17 17 39,40 22,23,25.1 35 14 36 31 22 30 50 36 13,15,18 50 14,15Ht-226 15 13,16 12 28 24 10 13 13 10 13 15 20 16 17 21 12 24 12 11 11 14 19 39,40 22,25.1,26.1 37 14 37 33 22 31 50 36 14,16,19 57 13,15Ht-227 15 12,14 12 29 21 9 12 14 10 11 14 17 15 14 22 13 23 11 13 9 19 16 35,40 19,24,26.1 38 13 36 31 18 28 46 38 10,13,14 49 14,16Ht-228 16 14,15 12 28 23 10 14 13 10 11 14 16 17 19 21 13 27 12 12 11 18 16 38 21,22,25.1 40 13 38 30 21 29 49 38 12,13,16 51 13,15
Table I. continuation . . . .
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
58
Table 1. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-153 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 21 13 23 11 12 11 19 15 36,39 19,24.1,25 41 13 35 31 20 27 45 36 14 49 15Ht-154 15 12,16 12 28 24 10 14 13 10 14 15 19 15 16 22 12 24 13 10 12 15 19 38,41 21,24.1,25.1 38 14 38 31 24 30 51 38 15,17 55 13,15Ht-155 15 13,15 12 31 23 10 14 13 10 11 14 18 17 13 21 12 25 11 12 10 19 15 37,40 23,24,26.1 39 13 35 29 21 31 48 37 12,17,19 49 13,14Ht-156 15 13,15 12 31 23 10 14 13 10 11 14 18 17 13 23 12 24 11 12 10 19 15 38,40 22,23,27.1 38 13 35 30 21 30 50 37 12,15,20 49 13,14Ht-157 17 13,14 12 28 23 10 14 14 10 12 14 16 17 17 21 11 26 11 13 11 18 16 37,38 19,23.1,24 36 13 37 31 21 29 51 37 12,15,18 51 14,15Ht-158 15 13,14 12 29 25 10 14 13 10 11 14 18 16 16 19 12 25 11 13 11 19 17 37,39 22,27.1 38 13 35 29 22 33 48 37 11,18 49 14Ht-159 15 14,14 12 28 23 10 14 13 10 11 14 16 16 18 21 12 26 11 12 11 18 16 38 20,24,27.1 34 13 37 31 21 31 51 40 12,17 49 14Ht-160 15 13,15 13 30 23 11 13 13 10 11 16 19 15 15 24 14 25 11 13 12 19 16 37,39 19,22,23 41 13 32 31 20 33 49 36 13,14 46 12,15Ht-161 15 12,19 13 30 25 11 13 15 10 11 14 18 15 18 22 10 22 10 13 13 17 19 36,38 21,24,24.1 42 13 38 27 22 27 46 35 11,13,14 51 13,15Ht-162 12 13,18 13 30 23 10 13 13 8 12 15 20 15 19 20 12 23 11 13 12 16 19 35,39 22,24.1,25 41 12 38 29 22 30 51 36 14,16 50 14Ht-163 15 13,18 12 28 24 10 14 12 11 12 14 20 15 17 20 12 23 12 12 11 19 20 36,38 19,24,24.1 34 16 40 28 19 34 49 36 13,16 53 13Ht-164 15 12,16 12 27 24 10 13 13 10 12 16 19 15 13 21 11 25 12 11 11 14 18 38,40 20,21.1,24.1 37 12 36 31 21 30 49 38 13,16 60 14,15Ht-165 15 12,15 12 28 24 10 13 13 10 12 15 19 16 15 22 11 24 13 11 11 15 17 38,41 21,25.1 38 14 38 30 24 31 49 39 13,16,17 58 13,16Ht-166 15 15,19 14 30 26 10 13 14 10 11 14 18 16 14 21 11 23 11 12 13 16 19 37 21,25,25.1 41 13 38 30 23 29 49 36 11,13,15 50 13Ht-167 15 12,16 12 28 24 11 13 12 10 13 14 19 15 15 21 12 25 12 11 11 16 18 38,40 21,24,27.1 38 15 39 31 22 31 50 37 13,15,17 58 13,16Ht-168 16 12,18 13 31 24 10 13 12 10 11 15 19 15 17 22 12 22 11 15 10 18 18 36,41 21,24,24.1 40 14 37 30 20 32 48 37 13,14 49 14,16Ht-169 15 12,17 12 28 24 11 13 12 10 12 14 19 15 16 22 12 23 13 11 11 16 17 40 21,25,25.1 37 15 40 30 22 31 51 38 12,15,16 59 13,15Ht-170 14 12,17 12 28 24 10 14 13 11 13 15 20 15 18 20 12 23 11 12 12 17 19 36,39 19,24,25.1 35 15 39 30 18 32 49 36 11,14,16 48 13,14Ht-171 15 13,18 13 29 25 11 13 14 10 12 14 19 15 16 21 10 24 10 12 12 17 20 38 24.1,26 42 13 36 32 22 27 49 38 12,14 51 17Ht-172 15 12,17 12 28 24 10 13 13 10 11 15 19 15 17 21 12 26 12 11 11 15 19 38,39 21,23.1,27.1 37 14 38 30 21 32 48 36 12,16,18 56 13,16Ht-173 15 12,17 12 28 24 12 13 12 10 12 14 19 15 16 22 12 23 12 11 11 16 18 40 21,24,25.1 37 15 38 30 22 31 51 38 11,15,16 58 13,16Ht-174 15 12,15 12 29 24 10 13 13 10 13 15 19 15 17 22 12 24 14 11 11 15 18 39,40 21,26.1,28.1 37 14 39 32 25 30 50 37 14,15,17 59 13,15Ht-175 13 16,19 13 30 23 10 11 13 10 12 14 20 17 15 22 12 23 12 13 12 19 18 35,38 19,24,24.1 39 13 34 27 22 31 49 37 16,17,19 49 16,17Ht-176 15 13,13 12 28 23 10 14 13 10 13 14 18 16 15 21 12 24 11 12 11 19 16 38 20,23,25.1 37 14 38 29 19 30 50 38 12,19,20 50 14,15Ht-177 15 12,16 12 29 24 11 14 13 10 13 15 19 15 17 24 12 23 12 11 11 15 19 38,41 21,23.1,24.1 37 13 37 31 24 30 48 38 14,16,17 59 13,15Ht-178 15 14,14 12 29 23 10 14 13 10 11 14 16 17 17 20 11 26 11 12 11 18 17 38 21,22,27.1 36 13 37 30 21 30 49 38 12,13,17 54 14,16Ht-179 17 13,19 13 28 26 10 13 12 10 12 14 19 15 21 23 13 24 11 12 10 18 18 36,38 20,24,26.1 37 14 36 30 22 29 50 35 11,12,13 53 13,16Ht-180 15 12,17 12 29 24 11 13 12 10 12 14 19 15 15 21 12 24 13 11 11 13 16 39,40 21,24,25.1 35 15 39 30 23 31 50 39 13,15 60 13,16Ht-181 15 12,15 12 29 25 10 13 14 10 12 15 19 15 16 21 12 24 12 12 11 15 19 39 21,24.1,26.1 37 14 39 30 23 31 52 37 13,15,16 55 13,16Ht-182 14 15,15.2 13 30 25 10 12 12 8 11 14 19 15 16 20 13 21 11 12 12 19 17 35,39 22,24,28 41 14 37 28 20 23 46 37 13,18 43 14Ht-183 12 13,18 14 31 24 10 13 13 10 12 15 20 15 17 21 11 24 11 12 12 15 18 36,39 21,24,24.1 40 12 36 28 23 30 49 36 14,15 49 15,16Ht-184 14 11,14 13 29 24 11 13 13 12 11 14 18 15 16 23 11 23 11 12 10 17 17 35,36 20,25,27.1 37 14 37 29 23 29 48 39 11,16 50 13,14Ht-185 15 12,12 12 27 24 11 13 13 10 12 14 19 15 15 21 12 25 12 11 11 15 17 39 21,22,27.1 36 15 38 32 23 30 48 37 13,15 59 13,16Ht-186 16 13,14 13 29 23 10 14 13 11 11 14 16 17 18 21 13 27 11 12 11 18 16 37,38 21,25,27.1 40 13 37 32 20 29 50 38 12,15,16 52 15Ht-187 15 12,18 12 28 23 10 13 13 10 13 14 19 15 16 21 13 23 12 11 11 15 20 39 22,25,25.1 38 15 39 30 24 32 51 37 15,16,17 58 13,14Ht-188 15 12,16 12 28 24 10 13 13 10 13 14 19 14 16 24 12 25 13 12 11 15 19 39,40 20,23,25.1 37 15 39 29 22 31 48 36 13,15,16 57 14,16Ht-189 15 13,14,16 12 28 24 10 11 12 9 12 16 19 15 19 21 11 23 10 12 9 17 16 40 18,25.1 39 12 34 29 22 29 50 37 11,13,18 48 10Ht-190 13 15,16.2 13 30 25 10 12 12 8 11 14 19 15 16 20 12 21 12 13 12 19 17 35,39 21,24 42 13 36 28 20 23 46 37 14,18,20 43 13,14Ht-191 15 12,13 12 28 23 10 15 13 10 12 14 18 17 14 23 11 24 11 14 11 18 16 37 22,22.1 37 14 39 30 21 30 49 39 12,17,19 50 14,15Ht-192 15 13,17 14 31 24 11 13 15 10 12 14 18 15 18 21 10 22 10 13 13 17 18 37,39 20,26.1 43 13 37 27 23 27 48 35 11,13,13.1 51 13,14Ht-193 15 12,16 14 31 24 10 13 14 10 11 14 18 16 15 21 12 23 11 12 11 20 19 40 24.1 38 14 35 29 20 29 49 35 15.3,16 53 14Ht-194 15 11,15 12 28 21 10 11 12 10 11 14 21 15 17 24 11 26 12 13 9 19 17 33,38 20,21,22,23.1 40 14 37 33 19 29 43 39 9.2,13,17 52 12,15Ht-195 15 13,18 14 30 24 10 14 15 10 11 14 17 15 18 22 10 23 9 13 12 17 19 36,37 20,27,27.1 42 13 36 27 21 28 49 38 11,12,13 54 13,15Ht-196 14 13,14 14 31 24 11 14 13 9 13 14 20 14 20 21 12 28 12 12 11 17 19 36 21,22,24 41 13 37 30 19 33 45 34 10,14,17 49 11,15Ht-197 15 12,16 12 28 24 11 13 12 10 13 14 19 15 16 22 12 25 13 11 11 13 17 39,40 20,23,25.1 36 15 38 30 22 32 49 39 13,15 60 13,16Ht-198 15 13,14 14 31 25 11 11 13 9 12 14 21 15 16 23 12 27 12 11 13 16 18 37,38 21,22 36 12 36 30 19 29 46 39 12,15,17 51 15,17Ht-199 15 12,16 12 28 24 11 13 12 10 13 14 19 15 15 21 11 25 13 11 11 16 17 39,40 20,24,25.1 37 14 36 30 23 32 50 36 14,15 60 13,15Ht-200 15 12,16 12 28 24 10 14 13 10 13 15 19 15 16 22 12 24 12 10 12 15 21 38,41 22,25.1 37 14 38 30 24 30 51 37 15,17,18 55 13,16Ht-201 13 15,15 12 30 23 10 11 13 11 12 15 19 14 16 19 12 25 12 12 10 18 19 36,39 18.2,23,25 37 16 38 34 18 26 52 35 13,14,17 44 16,17Ht-202 15 12,16 12 28 24 10 13 13 10 13 15 19 16 16 24 12 24 12 11 11 15 19 39,40 20,25.1,26.1 38 14 39 31 21 28 52 37 14,16 60 13,16Ht-203 15 12,16 12 28 24 10 13 13 11 14 15 19 16 17 22 11 24 12 11 11 15 20 40 21,25.1 37 14 40 31 21 30 55 38 13,15,16 59 13,17Ht-204 15 11,16 12 28 21 10 11 12 10 11 14 21 14 18 22 11 29 11 13 9 19 19 33,38 22,23,28.1 39 14 37 33 21 31 44 40 9.2,12,16 51 12,15Ht-205 15 12,17 12 28 24 11 13 12 10 12 14 19 15 15 22 13 23 13 11 11 16 18 40 21,22,26.1 37 15 39 30 23 31 50 37 12,15,16 57 13,15Ht-206 15 12,17 12 28 25 10 13 13 10 13 14 19 15 16 21 11 24 13 11 11 16 18 39,43 21,24,24.1 36 15 39 30 22 31 50 38 14,16,17 59 14,17Ht-207 15 13,15 12 28 24 11 13 15 10 12 14 19 15 16 22 12 25 13 10 11 15 19 40,41 20,23,23.1 38 15 39 30 26 28 50 40 12,16 55 13,15Ht-208 15 12,16 11 27 24 10 13 13 10 12 15 19 15 16 21 12 24 13 11 11 13 18 39,41 20,26.1,28.1 38 14 38 30 24 30 49 37 15,16,17 60 13,16Ht-209 12 13,17 14 31 24 10 13 13 10 13 15 20 15 18 21 11 23 11 12 12 15 17 36,39 20,25.1,26 39 12 37 28 23 30 50 36 14,15,16 49 14,16Ht-210 15 11,17 13 30 23 10 11 15 10 11 14 22 16 16 21 11 25 13 12 9 16 19 39 21,24,26.1 38 12 36 33 22 30 48 35 12,16,19 47 15,17Ht-211 15 12,20 12 29 25 10 13 13 10 12 14 20 16 18 21 13 25 12 12 11 20 19 37 23,24 40 14 36 33 22 31 56 38 14,15,16 53 14,16Ht-212 15 12,20 12 28 23 10 13 13 10 11 14 20 14 18 21 12 25 11 12 11 19 18 36,37 21,22.1,24 39 14 36 31 22 30 49 36 13,16,17 56 14,15Ht-213 15 12,12 12 29 24 10 13 13 10 12 15 19 15 16 23 12 24 12 11 11 15 20 38,39 19,24.1,25.1 37 14 38 31 22 30 47 37 13,16,17 60 15,16Ht-214 13 15,15.2 13 30 25 10 12 12 8 12 14 19 15 18 20 12 21 11 13 12 19 18 37,40 22,24,26 40 14 37 29 19 23 48 38 15,17,18 44 13,14Ht-215 13 11,12 13 31 22 10 14 14 10 12 14 20 16 14.1 21 11 22 12 12 10 19 19 37 21.1 38 13 35 30 21 29 45 35 9,12,15 49 19Ht-216 15 12,20 13 29 23 10 13 13 9 12 15 16 15 16 21 11 27 11 13 12 18 16 37 20,26.1 39 14 36 33 21 29 47 33 14,15 50 14,15Ht-217 16 12,19 12 30 24 10 13 13 10 11 14 21 15 18 21 12 25 11 12 11 19 17 36,37 22,23.1,25 38 15 38 31 23 33 50 39 13,15 53 14,15Ht-218 15 13,15 12 28 23 10 14 13 10 11 14 16 17 16 21 11 26 11 12 11 20 17 36,38 21,22,29.1 36 13 37 30 21 29 50 38 12,13,16 49 16Ht-219 15 12,16 12 27 24 10 13 13 10 13 16 19 15 13 21 12 24 12 12 11 14 20 39 22,23.1,24.1 37 12 35 30 20 30 47 37 13,16,19 60 15Ht-220 15 12,13 12 28 24 10 13 14 10 12 14 19 15 16 21 12 23 13 11 11 15 20 39 21,23,25.1 38 15 40 31 23 31 47 39 11,16 60 13,16Ht-221 15 12,15 12 29 21 9 12 14 10 11 14 17 15 15 21 12 23 11 12 11 17 15 36,40 21,24,26.1 41 13 37 29 17 27 47 37 12,14,16 48 14,17Ht-222 15 12,17 12 29 23 10 13 13 10 12 14 19 16 16 21 12 22 11 11 11 16 20 38,40 22,23,23.1 36 15 39 31 25 31 53 39 13,16,17 56 13,15Ht-223 14 15,19 12 28 23 10 14 12 11 12 15 20 15 16 20 12 23 11 13 11 17 18 35,39 20,23,27.1 37 16 39 28 20 33 51 38 13,14,15 54 14Ht-224 14 13,16 12 28 23 9 11 12 9 11 15 20 15 17 21 11 23 11 12 10 17 18 36,40 21,22,24.1 40 14 36 32 20 30 48 37 11,13,16 47 13,15Ht-225 15 12,17 12 27 23 10 15 13 11 10 14 17 17 15 21 11 23 12 12 11 17 17 39,40 22,23,25.1 35 14 36 31 22 30 50 36 13,15,18 50 14,15Ht-226 15 13,16 12 28 24 10 13 13 10 13 15 20 16 17 21 12 24 12 11 11 14 19 39,40 22,25.1,26.1 37 14 37 33 22 31 50 36 14,16,19 57 13,15Ht-227 15 12,14 12 29 21 9 12 14 10 11 14 17 15 14 22 13 23 11 13 9 19 16 35,40 19,24,26.1 38 13 36 31 18 28 46 38 10,13,14 49 14,16Ht-228 16 14,15 12 28 23 10 14 13 10 11 14 16 17 19 21 13 27 12 12 11 18 16 38 21,22,25.1 40 13 38 30 21 29 49 38 12,13,16 51 13,15
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
59
Table 1. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-229 16 13,16 12 29 23 10 14 13 10 12 14 16 17 18 21 10 28 11 13 11 16 16 36,38 21,25,26.1 35 13 36 31 24 29 49 37 11,14,18 51 14,15Ht-230 15 13,18 13 30 26 10 13 15 10 11 14 18 15 18 22 11 22 10 12 12 17 20 36,37 22,25,26.1 39 13 39 27 24 26 48 39 11,13,15 52 14,15Ht-231 15 12,16 12 29 24 10 13 13 10 13 15 19 15 18 21 12 24 13 11 11 14 18 39 22,25.1,27.1 36 14 36 33 21 31 51 39 14,16,17 57 13,15Ht-232 15 11,16 12 29 24 10 13 14 10 12 15 19 16 17 22 12 24 13 12 11 14 19 39 22,26.1,27.1 35 14 37 31 21 32 47 38 14,16,17 55 12,16Ht-233 16 14,15 12 28 23 10 14 13 10 11 14 16 17 19 21 13 27 12 12 11 17 16 38 21,22,25.1 40 13 38 30 22 29 49 38 12,13,16 52 13,15Ht-234 15 12,16 12 28 24 10 13 13 10 13 15 19 15 16 22 12 25 12 11 11 14 20 40 21,24.1 37 14 38 31 23 30 49 33 12,15,16 57 13,16Ht-235 15 12,15 12 28 24 10 14 13 10 15 15 19 15 16 22 12 24 12 10 12 15 21 38,41 22,24.1,26.1 38 14 38 31 21 30 50 37 15,16 55 13,15Ht-236 15 11,16 13 31 25 9 13 15 10 0 15 20 15 18 21 11 22 11 13 14 19 20 35,37 23,23.1,25.1 39 13 38 33 20 29 49 38 12,14,16 45 14,15Ht-237 15 12,16 12 28 24 10 13 13 10 13 14 19 15 17 23 12 24 13 11 10 15 18 40,41 23,26.1 38 15 38 33 22 30 50 38 14,15,16 58 14,17Ht-238 12 13,18 14 31 23 10 13 13 10 12 15 20 15 18 20 12 23 11 12 12 16 18 35,40 22,22.1,25 39 12 36 29 22 32 50 36 13,15,16 51 14,15Ht-239 15 11,17 12 29 21 11 11 12 10 10 14 21 15 20 24 11 27 11 13 9 20 19 34,38 19,21,23.1 39 14 37 34 21 31 43 38 9,12,18 55 12,13Ht-240 15 11,17 13 30 23 10 11 15 10 11 14 21 15 17 22 11 24 12 12 9 16 18 36,38 21,24.1 35 12 34 32 23 31 46 33 13,15,17 46 14,15Ht-241 15 15,17 12 28 24 10 13 14 10 12 14 19 15 17 23 12 26 14 12 11 20 14 37 18,24,24.1 42 15 40 32 22 27 50 34 8,12,18 49 12,15Ht-242 16 12,14 12 28 23 10 14 13 10 12 14 16 17 19 21 12 29 12 13 12 18 16 38 23,24,25.1 34 13 36 30 20 30 49 36 11,12,16 50 14,16Ht-243 16 12,19 12 28 26 10 13 13 10 12 14 19 16 20 22 11 26 11 12 10 17 18 36,38 20,22,22.1 40 14 36 30 19 32 52 39 9,10,13 53 15Ht-244 15 13,16 12 28 24 10 13 13 10 13 15 20 15 16 24 12 24 12 11 11 15 18 37,39 21,24.1,25.1 39 14 38 31 21 31 48 40 13,17,18 59 13,16Ht-245 15 12,14 12 29 22 9 12 13 10 11 14 17 16 14 23 12 23 11 12 11 18 17 36,41 20,24.1,26 41 13 36 24 18 28 47 35 13,15 49 15Ht-246 15 11,16 11 27 21 10 11 12 10 11 14 21 15 20 21 11 26 11 12 9 19 17 33,38 19,20,25.1 36 14 36 33 20 29 44 39 10.2,13,18 53 12,13Ht-247 14 12,17 12 28 24 10 13 12 11 12 15 19 16 15 21 12 25 11 12 11 16 17 34,39 23,25,25.1 37 15 36 33 20 30 49 34 12,14 55 13Ht-248 15 15,20 13 28 24 10 13 14 10 12 14 19 16 16 22 11 22 11 12 12 17 19 37,38 21,24,24.1 40 13 36 29 23 30 47 37 10,12,14 50 12,14Ht-249 15 12,19 12 28 24 10 13 12 11 11 14 18 14 17 22 11 25 11 13 10 18 18 36,38 21,23.1,24 39 15 38 31 22 33 49 38 8,12,14 51 14,15Ht-250 16 12,16 12 27 23 10 12 14 10 12 14 18 15 14 21 13 24 11 13 10 19 17 37,40 22,23,24.1 39 13 35 30 19 28 48 34 13,14,15 50 14,16Ht-251 15 13,14 12 28 23 10 14 13 10 12 14 16 16 20 21 13 28 12 13 11 20 16 37,39 20,22,25.1 38 13 36 31 20 30 48 39 12,15,16 52 13,15Ht-252 16 12,14 13 29 23 10 14 13 10 12 14 18 18 16 20 12 24 11 12 11 20 17 36,37 21,23.1 36 13 37 31 19 31 50 37 12,17,18 50 14Ht-253 16 11,14 13 31 23 11 11 13 11 10 14 20 16 16 23 12 23 12 12 10 19 17 37,38 21,23.1,25 40 15 38 32 17 31 48 35 10,13,15 50 15,16Ht-254 16 13,15 12 28 23 10 14 13 10 11 14 16 17 19 21 12 26 11 12 11 17 16 38,39 19,24,27.1 38 13 37 31 21 28 50 35 12,14,18 50 14,16Ht-255 15 12,14 12 27 23 10 14 10 11 11 15 18 15 16 27 14 23 11 12 11 19 17 38,40 20,21,27 38 13 41 30 21 30 48 35 11,16,19 50 16,17Ht-256 14 11,13 13 29 23 10 14 13 10 12 14 19 16 14 24 12 22 11 12 10 18 17 37 26.1 37 13 35 32 23 27 44 35 13,15 50 13Ht-257 15 12,21 12 30 24 11 13 13 10 11 14 20 13 19 21 11 25 11 12 11 19 18 38 23.1,24 38 14 37 31 23 34 53 36 12,13,15 54 14Ht-258 17 13,14 12 28 23 10 14 13 10 11 14 16 15 13 21 12 27 11 12 11 17 16 38 24 37 13 37 31 21 29 54 38 12,14,16 52 15Ht-259 15 14,14 12 27 22 10 15 13 10 11 14 16 16 20 21 12 27 11 12 11 18 17 38,39 20,25,26.1 38 13 37 30 21 30 48 40 12,13,16 53 14,16Ht-260 15 13,14 12 27 23 10 14 13 10 11 14 16 16 18 21 12 27 11 13 11 17 16 37 20,23,23.1 39 13 36 32 21 29 49 40 12,14,16 52 14,15Ht-261 15 12,16 12 28 24 10 13 13 10 12 14 19 15 15 22 12 23 14 12 11 15 19 38,39 21,22,22.1 37 16 40 30 22 33 48 39 13,15,16 59 13,15Ht-262 15 12,21 12 28 24 10 13 13 10 11 14 20 15 18 21 12 26 11 13 11 19 18 36,37 19,22,22.1 40 15 38 31 24 33 52 37 13,17 54 14Ht-263 15 15,22 13 29 25 10 13 14 10 12 14 18 16 16 22 11 24 7 12 12 17 16 36,38 20,24,26.1 41 13 37 29 19 28 47 33 11,14 51 14,16Ht-264 16 12,15 12 28 24 10 13 13 10 13 14 19 15 16 22 12 25 12 11 11 15 19 40 21,23,26.1 38 15 40 30 23 30 51 37 16,17 59 14,17Ht-265 13 13,20 13 30 25 10 13 13 10 12 15 20 14 18 24 11 25 11 13 11.1 16 17 37,39 21,27.1,28 37 13 37 28 20 33 49 37 13,16 50 17,18Ht-266 15 13,14 13 31 22 10 14 13 10 12 14 18 12 15 20 13 26 11 12 13 19 16 33,40 19,25.1 38 13 38 28 22 30 53 39 13,17 51 14Ht-267 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 23 12 22 11 12 11 18 16 36,40 20,24,25 39 13 35 29 18 29 46 37 13,14,15 49 15,16Ht-268 15 13,13 12 28 24 10 14 13 10 11 14 17 17 15 19 12 21 11 11 11 18 18 40,42 20,23,24.1 37 13 35 30 20 30 48 39 10,18,20 51 14,17Ht-269 15 13,18 13 30 25 11 13 15 10 11 14 17 15 18 21 10 22 10 14 10 16 19 36,38 22,27.1,28 41 13 38 27 22 28 49 38 11,12,13 51 13,14Ht-270 15 13,18 13 31 25 11 13 14 10 12 14 19 15 16 22 10 24 10 12 13 17 20 39 24,24.1 41 13 36 32 21 28 48 37 12,13 52 17Ht-271 16 13,14 12 28 23 10 15 13 10 11 14 16 18 17 21 11 28 11 14 11 16 14 36,38 20,22,27.1 35 13 37 32 21 30 48 37 11,15,18 50 13,16Ht-272 15 12,16 12 27 25 10 13 13 10 13 16 19 15 13 21 11 24 12 12 10 14 17 39 21,23.1,25.1 36 12 35 30 21 30 49 38 13,16,18 58 16Ht-273 15 10,14 12 27 23 10 14 13 10 11 14 18 16 17 19 11 24 11 12 11 18 17 38 21,23.1 37 12 34 29 21 30 48 38 12,17,18 52 13,14Ht-274 14 13,19 13 29 22 10 13 13 9 12 15 16 15 16 21 12 34 11 12 14 17 17 36,38 19,23.1,24 41 15 36 33 22 31 47 37 15,17 52 15,16Ht-275 15 12,16 12 29 25 10 13 13 10 12 15 19 15 18 21 12 24 13 11 11 13 19 39,40 20.1,21,25.1 35 14 38 29 21 32 50 37 15,16,17 59 14,17Ht-276 15 12,16 12 28 24 11 14 13 10 12 15 19 15 16 21 12 24 12 10 12 15 19 38,40 23,24.1,25.1 36 14 38 31 24 30 51 38 14,17 54 13,15Ht-277 16 11,12 14 30 24 11 14 13 10 10 14 18 14 18 20 11 21 13 12 11 19 18 35 23 36 13 35 30 22 29 43 30 11,12,15 50 14Ht-278 16 13,14 12 28 23 10 14 13 11 12 14 16 15 17 22 13 27 12 14 12 18 17 38 23,27.1 32 13 35 32 22 29 48 38 10,12,16 51 14,17Ht-279 15 15,16 12 28 24 10 13 14 10 13 14 19 15 16 22 12 26 12 12 10 20 14 37,38 18,23.1,24 41 16 41 31 23 28 51 33 8,11,18 50 12,15Ht-280 15 12,15 12 28 24 10 13 13 10 14 15 19 16 17 23 12 24 12 11 11 15 19 40 21,26.1,29.1 37 14 39 31 22 30 54 38 14,15,16 59 13,17Ht-281 15 12,13 13 31 23 11 14 13 10 13 14 18 17 15 19 12 24 12 12 11 20 19 38,40 21,22,25.1 39 13 36 30 23 32 47 40 12,17,18 50 14,15Ht-282 15 13,13 12 28 23 10 14 13 10 11 14 18 18 15 19 11 23 11 12 11 20 18 39,41 21,24.1 38 13 37 29 19 30 47 39 13,19 51 14Ht-283 13 11,12 13 30 22 10 14 14 10 10 14 19 16 14.1 21 11 22 12 14 10 20 18 37 23.1 38 13 35 30 22 30 46 34 9,12,14 47 16Ht-284 15 13,19 12 28 24 10 14 12 11 12 14 20 14 18 20 12 24 11 12 11 17 18 34,39 22,23,25.1 39 15 37 27 18 32 48 37 10,13,15 54 13,14Ht-285 15 11,16 11 27 21 10 11 12 10 11 14 21 15 19 21 11 26 11 12 9 19 17 33,38 18,20,24.1 36 14 36 33 21 29 45 38 9.2,12,18 53 12,13Ht-286 15 12,16 12 28 25 10 13 13 10 14 15 19 15 16 21 12 25 12 12 12 14 17 40 22,23.1,25.1 39 14 38 31 24 30 47 37 14,16 58 14,15Ht-287 15 12,16 12 28 24 10 13 13 10 12 15 19 16 16 21 12 24 13 12 11 14 19 39,40 20,24.1 37 14 37 32 23 30 50 36 15,16,18 57 13,16Ht-288 15 12,16 12 28 24 10 13 13 10 12 15 19 15 17 21 11 23 12 11 10 16 17 38,39 21,25.1,28.1 36 14 36 30 21 31 51 38 13,15,16 60 14,16Ht-289 16 12,19 14 30 24 10 13 14 10 12 14 18 15 15 21 12 23 11 12 11 23 17 38,41 19,24,26.1 39 14 36 29 22 29 48 35 13.3,14,16 53 13,15Ht-290 15 12,16 12 28 24 11 13 12 10 13 14 19 15 16 22 11 25 13 11 11 16 19 38,41 18,22.1,24 37 15 37 31 28 31 51 36 15,16 61 14,16Ht-291 15 12,19 12 27 24 10 13 12 11 12 15 20 15 16 20 12 25 12 12 11 17 18 34,40 22,23,25.1 42 15 36 31 23 31 48 39 10,13,16 56 13,16Ht-292 15 14,14 12 29 21 9 14 14 10 11 14 17 15 15 22 12 23 11 12 10 16 15 36,41 21,23,28.1 39 13 35 29 19 29 46 39 11,15,16 48 14,16Ht-293 17 13,15 12 28 23 10 14 13 10 11 14 16 17 18 23 12 26 11 12 11 17 17 38,39 18,22,27.1 38 12 36 32 21 28 51 36 11,14,19 51 14,16Ht-294 12 14,15 14 30 23 11 13 12 10 11 15 23 15 19 21 12 24 12 12 10 18 15 34,35 21,22 40 12 36 31 18 31 48 36 13,20 47 14.2,15.2Ht-295 15 13,18 14 31 24 11 13 15 10 12 14 18 15 17 21 10 22 10 13 13 17 18 37,38 20,25.1 41 13 37 27 23 27 47 35 11,13,13.1 51 13,14Ht-296 15 12,17 12 28 24 10 13 13 10 12 16 19 15 17 21 12 25 12 11 11 15 17 39,40 22,24.1,27.1 36 14 37 30 23 30 47 39 14,16,18 57 13,18Ht-297 12 14,15 14 30 23 11 14 12 10 11 15 23 15 19 21 12 24 12 12 10 18 15 34 20,22,25.1 40 12 36 30 18 31 47 39 13,14,18 47 13.2,15.2Ht-298 15 10,16 12 28 21 10 11 12 10 12 14 21 16 18 23 11 28 12 12 9 18 18 32,38 21,24.1 41 15 37 30 21 29 45 37 9.2,13,17 53 12,14Ht-299 16 12,14 12 29 22 9 12 13 10 11 14 17 16 13 23 13 23 12 12 11 18 15 36,40 20,23.1,27 39 13 36 30 18 29 46 35 13,15 49 15
Table 1. continuation . . . .
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
60
Table 1. Y-STI haplotype data of 299 Filipino samples.
DY
S19
DY
S385
a/b
DY
S389
I
DY
S389
II
DY
S390
DY
S391
DY
S392
DY
S393
DY
S438
DY
S439
DY
S437
DY
S448
DY
S456
DY
S458
DY
S635
YG
ATA
H4
DY
S481
DY
S533
DY
S549
DY
S643
DY
S570
DY
S576
DY
F387
S1
DY
F399
S1
DY
S518
DY
S526
a
DY
S526
b
DY
S626
DY
S627
DY
S449
DY
S547
DY
S612
DY
F403
S1a
DY
F403
S1b
DY
F404
S1
Ht-229 16 13,16 12 29 23 10 14 13 10 12 14 16 17 18 21 10 28 11 13 11 16 16 36,38 21,25,26.1 35 13 36 31 24 29 49 37 11,14,18 51 14,15Ht-230 15 13,18 13 30 26 10 13 15 10 11 14 18 15 18 22 11 22 10 12 12 17 20 36,37 22,25,26.1 39 13 39 27 24 26 48 39 11,13,15 52 14,15Ht-231 15 12,16 12 29 24 10 13 13 10 13 15 19 15 18 21 12 24 13 11 11 14 18 39 22,25.1,27.1 36 14 36 33 21 31 51 39 14,16,17 57 13,15Ht-232 15 11,16 12 29 24 10 13 14 10 12 15 19 16 17 22 12 24 13 12 11 14 19 39 22,26.1,27.1 35 14 37 31 21 32 47 38 14,16,17 55 12,16Ht-233 16 14,15 12 28 23 10 14 13 10 11 14 16 17 19 21 13 27 12 12 11 17 16 38 21,22,25.1 40 13 38 30 22 29 49 38 12,13,16 52 13,15Ht-234 15 12,16 12 28 24 10 13 13 10 13 15 19 15 16 22 12 25 12 11 11 14 20 40 21,24.1 37 14 38 31 23 30 49 33 12,15,16 57 13,16Ht-235 15 12,15 12 28 24 10 14 13 10 15 15 19 15 16 22 12 24 12 10 12 15 21 38,41 22,24.1,26.1 38 14 38 31 21 30 50 37 15,16 55 13,15Ht-236 15 11,16 13 31 25 9 13 15 10 0 15 20 15 18 21 11 22 11 13 14 19 20 35,37 23,23.1,25.1 39 13 38 33 20 29 49 38 12,14,16 45 14,15Ht-237 15 12,16 12 28 24 10 13 13 10 13 14 19 15 17 23 12 24 13 11 10 15 18 40,41 23,26.1 38 15 38 33 22 30 50 38 14,15,16 58 14,17Ht-238 12 13,18 14 31 23 10 13 13 10 12 15 20 15 18 20 12 23 11 12 12 16 18 35,40 22,22.1,25 39 12 36 29 22 32 50 36 13,15,16 51 14,15Ht-239 15 11,17 12 29 21 11 11 12 10 10 14 21 15 20 24 11 27 11 13 9 20 19 34,38 19,21,23.1 39 14 37 34 21 31 43 38 9,12,18 55 12,13Ht-240 15 11,17 13 30 23 10 11 15 10 11 14 21 15 17 22 11 24 12 12 9 16 18 36,38 21,24.1 35 12 34 32 23 31 46 33 13,15,17 46 14,15Ht-241 15 15,17 12 28 24 10 13 14 10 12 14 19 15 17 23 12 26 14 12 11 20 14 37 18,24,24.1 42 15 40 32 22 27 50 34 8,12,18 49 12,15Ht-242 16 12,14 12 28 23 10 14 13 10 12 14 16 17 19 21 12 29 12 13 12 18 16 38 23,24,25.1 34 13 36 30 20 30 49 36 11,12,16 50 14,16Ht-243 16 12,19 12 28 26 10 13 13 10 12 14 19 16 20 22 11 26 11 12 10 17 18 36,38 20,22,22.1 40 14 36 30 19 32 52 39 9,10,13 53 15Ht-244 15 13,16 12 28 24 10 13 13 10 13 15 20 15 16 24 12 24 12 11 11 15 18 37,39 21,24.1,25.1 39 14 38 31 21 31 48 40 13,17,18 59 13,16Ht-245 15 12,14 12 29 22 9 12 13 10 11 14 17 16 14 23 12 23 11 12 11 18 17 36,41 20,24.1,26 41 13 36 24 18 28 47 35 13,15 49 15Ht-246 15 11,16 11 27 21 10 11 12 10 11 14 21 15 20 21 11 26 11 12 9 19 17 33,38 19,20,25.1 36 14 36 33 20 29 44 39 10.2,13,18 53 12,13Ht-247 14 12,17 12 28 24 10 13 12 11 12 15 19 16 15 21 12 25 11 12 11 16 17 34,39 23,25,25.1 37 15 36 33 20 30 49 34 12,14 55 13Ht-248 15 15,20 13 28 24 10 13 14 10 12 14 19 16 16 22 11 22 11 12 12 17 19 37,38 21,24,24.1 40 13 36 29 23 30 47 37 10,12,14 50 12,14Ht-249 15 12,19 12 28 24 10 13 12 11 11 14 18 14 17 22 11 25 11 13 10 18 18 36,38 21,23.1,24 39 15 38 31 22 33 49 38 8,12,14 51 14,15Ht-250 16 12,16 12 27 23 10 12 14 10 12 14 18 15 14 21 13 24 11 13 10 19 17 37,40 22,23,24.1 39 13 35 30 19 28 48 34 13,14,15 50 14,16Ht-251 15 13,14 12 28 23 10 14 13 10 12 14 16 16 20 21 13 28 12 13 11 20 16 37,39 20,22,25.1 38 13 36 31 20 30 48 39 12,15,16 52 13,15Ht-252 16 12,14 13 29 23 10 14 13 10 12 14 18 18 16 20 12 24 11 12 11 20 17 36,37 21,23.1 36 13 37 31 19 31 50 37 12,17,18 50 14Ht-253 16 11,14 13 31 23 11 11 13 11 10 14 20 16 16 23 12 23 12 12 10 19 17 37,38 21,23.1,25 40 15 38 32 17 31 48 35 10,13,15 50 15,16Ht-254 16 13,15 12 28 23 10 14 13 10 11 14 16 17 19 21 12 26 11 12 11 17 16 38,39 19,24,27.1 38 13 37 31 21 28 50 35 12,14,18 50 14,16Ht-255 15 12,14 12 27 23 10 14 10 11 11 15 18 15 16 27 14 23 11 12 11 19 17 38,40 20,21,27 38 13 41 30 21 30 48 35 11,16,19 50 16,17Ht-256 14 11,13 13 29 23 10 14 13 10 12 14 19 16 14 24 12 22 11 12 10 18 17 37 26.1 37 13 35 32 23 27 44 35 13,15 50 13Ht-257 15 12,21 12 30 24 11 13 13 10 11 14 20 13 19 21 11 25 11 12 11 19 18 38 23.1,24 38 14 37 31 23 34 53 36 12,13,15 54 14Ht-258 17 13,14 12 28 23 10 14 13 10 11 14 16 15 13 21 12 27 11 12 11 17 16 38 24 37 13 37 31 21 29 54 38 12,14,16 52 15Ht-259 15 14,14 12 27 22 10 15 13 10 11 14 16 16 20 21 12 27 11 12 11 18 17 38,39 20,25,26.1 38 13 37 30 21 30 48 40 12,13,16 53 14,16Ht-260 15 13,14 12 27 23 10 14 13 10 11 14 16 16 18 21 12 27 11 13 11 17 16 37 20,23,23.1 39 13 36 32 21 29 49 40 12,14,16 52 14,15Ht-261 15 12,16 12 28 24 10 13 13 10 12 14 19 15 15 22 12 23 14 12 11 15 19 38,39 21,22,22.1 37 16 40 30 22 33 48 39 13,15,16 59 13,15Ht-262 15 12,21 12 28 24 10 13 13 10 11 14 20 15 18 21 12 26 11 13 11 19 18 36,37 19,22,22.1 40 15 38 31 24 33 52 37 13,17 54 14Ht-263 15 15,22 13 29 25 10 13 14 10 12 14 18 16 16 22 11 24 7 12 12 17 16 36,38 20,24,26.1 41 13 37 29 19 28 47 33 11,14 51 14,16Ht-264 16 12,15 12 28 24 10 13 13 10 13 14 19 15 16 22 12 25 12 11 11 15 19 40 21,23,26.1 38 15 40 30 23 30 51 37 16,17 59 14,17Ht-265 13 13,20 13 30 25 10 13 13 10 12 15 20 14 18 24 11 25 11 13 11.1 16 17 37,39 21,27.1,28 37 13 37 28 20 33 49 37 13,16 50 17,18Ht-266 15 13,14 13 31 22 10 14 13 10 12 14 18 12 15 20 13 26 11 12 13 19 16 33,40 19,25.1 38 13 38 28 22 30 53 39 13,17 51 14Ht-267 15 12,14 12 29 21 9 12 13 10 11 14 17 15 14 23 12 22 11 12 11 18 16 36,40 20,24,25 39 13 35 29 18 29 46 37 13,14,15 49 15,16Ht-268 15 13,13 12 28 24 10 14 13 10 11 14 17 17 15 19 12 21 11 11 11 18 18 40,42 20,23,24.1 37 13 35 30 20 30 48 39 10,18,20 51 14,17Ht-269 15 13,18 13 30 25 11 13 15 10 11 14 17 15 18 21 10 22 10 14 10 16 19 36,38 22,27.1,28 41 13 38 27 22 28 49 38 11,12,13 51 13,14Ht-270 15 13,18 13 31 25 11 13 14 10 12 14 19 15 16 22 10 24 10 12 13 17 20 39 24,24.1 41 13 36 32 21 28 48 37 12,13 52 17Ht-271 16 13,14 12 28 23 10 15 13 10 11 14 16 18 17 21 11 28 11 14 11 16 14 36,38 20,22,27.1 35 13 37 32 21 30 48 37 11,15,18 50 13,16Ht-272 15 12,16 12 27 25 10 13 13 10 13 16 19 15 13 21 11 24 12 12 10 14 17 39 21,23.1,25.1 36 12 35 30 21 30 49 38 13,16,18 58 16Ht-273 15 10,14 12 27 23 10 14 13 10 11 14 18 16 17 19 11 24 11 12 11 18 17 38 21,23.1 37 12 34 29 21 30 48 38 12,17,18 52 13,14Ht-274 14 13,19 13 29 22 10 13 13 9 12 15 16 15 16 21 12 34 11 12 14 17 17 36,38 19,23.1,24 41 15 36 33 22 31 47 37 15,17 52 15,16Ht-275 15 12,16 12 29 25 10 13 13 10 12 15 19 15 18 21 12 24 13 11 11 13 19 39,40 20.1,21,25.1 35 14 38 29 21 32 50 37 15,16,17 59 14,17Ht-276 15 12,16 12 28 24 11 14 13 10 12 15 19 15 16 21 12 24 12 10 12 15 19 38,40 23,24.1,25.1 36 14 38 31 24 30 51 38 14,17 54 13,15Ht-277 16 11,12 14 30 24 11 14 13 10 10 14 18 14 18 20 11 21 13 12 11 19 18 35 23 36 13 35 30 22 29 43 30 11,12,15 50 14Ht-278 16 13,14 12 28 23 10 14 13 11 12 14 16 15 17 22 13 27 12 14 12 18 17 38 23,27.1 32 13 35 32 22 29 48 38 10,12,16 51 14,17Ht-279 15 15,16 12 28 24 10 13 14 10 13 14 19 15 16 22 12 26 12 12 10 20 14 37,38 18,23.1,24 41 16 41 31 23 28 51 33 8,11,18 50 12,15Ht-280 15 12,15 12 28 24 10 13 13 10 14 15 19 16 17 23 12 24 12 11 11 15 19 40 21,26.1,29.1 37 14 39 31 22 30 54 38 14,15,16 59 13,17Ht-281 15 12,13 13 31 23 11 14 13 10 13 14 18 17 15 19 12 24 12 12 11 20 19 38,40 21,22,25.1 39 13 36 30 23 32 47 40 12,17,18 50 14,15Ht-282 15 13,13 12 28 23 10 14 13 10 11 14 18 18 15 19 11 23 11 12 11 20 18 39,41 21,24.1 38 13 37 29 19 30 47 39 13,19 51 14Ht-283 13 11,12 13 30 22 10 14 14 10 10 14 19 16 14.1 21 11 22 12 14 10 20 18 37 23.1 38 13 35 30 22 30 46 34 9,12,14 47 16Ht-284 15 13,19 12 28 24 10 14 12 11 12 14 20 14 18 20 12 24 11 12 11 17 18 34,39 22,23,25.1 39 15 37 27 18 32 48 37 10,13,15 54 13,14Ht-285 15 11,16 11 27 21 10 11 12 10 11 14 21 15 19 21 11 26 11 12 9 19 17 33,38 18,20,24.1 36 14 36 33 21 29 45 38 9.2,12,18 53 12,13Ht-286 15 12,16 12 28 25 10 13 13 10 14 15 19 15 16 21 12 25 12 12 12 14 17 40 22,23.1,25.1 39 14 38 31 24 30 47 37 14,16 58 14,15Ht-287 15 12,16 12 28 24 10 13 13 10 12 15 19 16 16 21 12 24 13 12 11 14 19 39,40 20,24.1 37 14 37 32 23 30 50 36 15,16,18 57 13,16Ht-288 15 12,16 12 28 24 10 13 13 10 12 15 19 15 17 21 11 23 12 11 10 16 17 38,39 21,25.1,28.1 36 14 36 30 21 31 51 38 13,15,16 60 14,16Ht-289 16 12,19 14 30 24 10 13 14 10 12 14 18 15 15 21 12 23 11 12 11 23 17 38,41 19,24,26.1 39 14 36 29 22 29 48 35 13.3,14,16 53 13,15Ht-290 15 12,16 12 28 24 11 13 12 10 13 14 19 15 16 22 11 25 13 11 11 16 19 38,41 18,22.1,24 37 15 37 31 28 31 51 36 15,16 61 14,16Ht-291 15 12,19 12 27 24 10 13 12 11 12 15 20 15 16 20 12 25 12 12 11 17 18 34,40 22,23,25.1 42 15 36 31 23 31 48 39 10,13,16 56 13,16Ht-292 15 14,14 12 29 21 9 14 14 10 11 14 17 15 15 22 12 23 11 12 10 16 15 36,41 21,23,28.1 39 13 35 29 19 29 46 39 11,15,16 48 14,16Ht-293 17 13,15 12 28 23 10 14 13 10 11 14 16 17 18 23 12 26 11 12 11 17 17 38,39 18,22,27.1 38 12 36 32 21 28 51 36 11,14,19 51 14,16Ht-294 12 14,15 14 30 23 11 13 12 10 11 15 23 15 19 21 12 24 12 12 10 18 15 34,35 21,22 40 12 36 31 18 31 48 36 13,20 47 14.2,15.2Ht-295 15 13,18 14 31 24 11 13 15 10 12 14 18 15 17 21 10 22 10 13 13 17 18 37,38 20,25.1 41 13 37 27 23 27 47 35 11,13,13.1 51 13,14Ht-296 15 12,17 12 28 24 10 13 13 10 12 16 19 15 17 21 12 25 12 11 11 15 17 39,40 22,24.1,27.1 36 14 37 30 23 30 47 39 14,16,18 57 13,18Ht-297 12 14,15 14 30 23 11 14 12 10 11 15 23 15 19 21 12 24 12 12 10 18 15 34 20,22,25.1 40 12 36 30 18 31 47 39 13,14,18 47 13.2,15.2Ht-298 15 10,16 12 28 21 10 11 12 10 12 14 21 16 18 23 11 28 12 12 9 18 18 32,38 21,24.1 41 15 37 30 21 29 45 37 9.2,13,17 53 12,14Ht-299 16 12,14 12 29 22 9 12 13 10 11 14 17 16 13 23 13 23 12 12 11 18 15 36,40 20,23.1,27 39 13 36 30 18 29 46 35 13,15 49 15
Salvador et al.: Filipino Y-STR DNA VariationSpecial Issue on Genomics
61
DYS19 Count Frequency
12 6 0.02007
13 13 0.04348
14 17 0.05686
15 202 0.67559
16 43 0.14381
17 18 0.06020
GD 0.51548
DYS385 a/b Count Frequency
10, 14 1 0.0033410, 16 1 0.0033411, 11 1 0.0033411, 12 3 0.0100311, 13 3 0.0100311, 14 3 0.0100311, 15 3 0.0100311, 16 10 0.0334411, 17 7 0.0234111, 18 1 0.0033412, 12 3 0.0100312, 13 15 0.0501712, 14 20 0.0668912, 15 19 0.0635512, 16 38 0.1270912, 17 25 0.0836112, 18 5 0.0167212, 19 7 0.0234112, 20 4 0.0133812, 21 4 0.0133813, 13 19 0.0635513, 14 20 0.06689
13, 14, 16 1 0.0033413, 15 10 0.0334413, 16 5 0.0167213, 17 3 0.0100313, 18 17 0.0568613, 19 6 0.0200713, 20 4 0.0133813, 21 2 0.0066913, 23 2 0.0066914, 14 7 0.0234114, 15 5 0.0167214, 17 1 0.0033414, 18 1 0.0033414, 19 2 0.0066915, 15 2 0.00669
15, 15.2 3 0.0100315, 16 2 0.00669
15, 16.2 1 0.0033415, 17 1 0.0033415, 18 1 0.0033415, 19 3 0.0100315, 20 4 0.0133815, 22 1 0.0033416, 16 1 0.0033416, 19 2 0.00669
GD 0.950214361
Table II. Alleles, allele counts, allele frequencies, and gene diversity (GD) indices for each marker unit.
DYS389 I Count Frequency
11 6 0.02007
12 203 0.67893
13 65 0.21739
14 25 0.08361
GD 0.48603
DYS389 II Count Frequency
26 2 0.00669
27 27 0.09030
28 135 0.45151
29 67 0.22408
30 35 0.11706
31 32 0.10702
32 1 0.00334
GD 0.71496
DYS390 Count Frequency
21 22 0.07358
22 13 0.04348
23 97 0.32441
24 119 0.39799
25 44 0.14716
26 4 0.01338
GD 0.70959
DYS391 Count Frequency
9 22 0.07358
10 219 0.73244
11 55 0.18395
12 3 0.01003
GD 0.42560
DYS392 Count Frequency
11 27 0.09030
12 32 0.10702
13 148 0.49498
14 82 0.27425
14.1 1 0.00334
15 9 0.03010
GD 0.66147
DYS393 Count Frequency
10 1 0.00334
12 68 0.22742
13 172 0.57525
14 41 0.13712
15 17 0.05686
GD 0.59732
DYS438 Count Frequency
8 6 0.02007
9 8 0.02676
10 253 0.84615
11 28 0.09365
12 4 0.01338
GD 0.27488
DYS439 Count Frequency
10 12 0.04027
11 99 0.33221
12 125 0.41946
13 51 0.17114
14 10 0.03356
15 1 0.00336
GD 0.68392
DYS437 Count Frequency
13 1 0.00334
14 208 0.69565
15 81 0.27090
16 9 0.03010
GD 0.44324
DYS448 Count Frequency
16 30 0.10033
17 32 0.10702
18 57 0.19064
19 121 0.40468
20 42 0.14047
21 13 0.04348
22 2 0.00669
23 2 0.00669
GD 0.27488 0.75920
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DYS456 Count Frequency
12 1 0.00334
13 3 0.01003
14 24 0.08027
15 170 0.56856
16 52 0.17391
17 35 0.11706
18 10 0.03344
19 4 0.01338
GD 0.62703
DYS458 Count Frequency
13 9 0.03010
14 20 0.06689
14.1 2 0.00669
15 49 0.16388
16 81 0.27090
17 63 0.21070
18 49 0.16388
19 17 0.05686
20 6 0.02007
21 3 0.01003
GD 0.82209
DYS635 Count Frequency
19 19 0.06355
20 32 0.10702
21 135 0.45151
22 59 0.19732
23 32 0.10702
24 17 0.05686
25 1 0.00334
27 2 0.00669
28 1 0.00334
30 1 0.00334
GD 0.72939
YGATAH4 Count Frequency
10 20 0.06689
11 85 0.28428
12 156 0.52174
13 33 0.11037
14 5 0.01672
GD 0.63215
DYS481 Count Frequency
17 2 0.00669
20 1 0.00334
21 11 0.03679
22 24 0.08027
23 62 0.20736
24 89 0.29766
25 55 0.18395
26 22 0.07358
27 24 0.08027
28 6 0.02007
29 2 0.00669
34 1 0.00334
GD 0.81713
DYS533 Count Frequency
7 1 0.00334
9 1 0.00334
10 22 0.07358
11 137 0.45819
12 86 0.28763
13 45 0.15050
14 7 0.02341
GD 0.68097
DYS549 Count Frequency
10 6 0.02007
11 75 0.25084
12 142 0.47492
13 64 0.21405
14 10 0.03344
15 2 0.00669
GD 0.66638
DYS643 Count Frequency
8 1 0.00334
9 15 0.05017
10 39 0.13043
11 185 0.61873
11.1 3 0.01003
12 42 0.14047
13 10 0.03344
14 3 0.01003
15 1 0.00334
GD 0.57851
DYS570 Count Frequency
13 4 0.01338
14 16 0.05351
15 50 0.16722
16 42 0.14047
17 52 0.17391
18 52 0.17391
19 58 0.19398
20 23 0.07692
21 1 0.00334
23 1 0.00334
GD 0.84804
DYS576 Count Frequency
14 4 0.01338
15 16 0.05351
16 48 0.16054
17 66 0.22074
18 81 0.27090
19 56 0.18729
20 21 0.07023
21 6 0.02007
22 1 0.00334
GD 0.81136
DYF387S1 Count Frequency
32, 38 1 0.00334
33, 38 6 0.02007
33, 39 1 0.00334
33, 40 1 0.00334
34 1 0.00334
34, 35 1 0.00334
34, 36 1 0.00334
34, 38 1 0.00334
34, 39 2 0.00669
34, 40 2 0.00669
35 2 0.00669
35, 36 2 0.00669
35, 37 2 0.00669
35, 38 4 0.01338
35, 39 7 0.02341
35, 40 4 0.01338
35, 41 1 0.00334
36 6 0.02007
36, 37 12 0.04013
36, 38 24 0.08027
36, 39 10 0.03344
36, 40 7 0.02341
36, 41 6 0.02007
37 12 0.04013
37, 38 21 0.07023
37, 39 23 0.07692
37, 40 11 0.03679
37, 41 1 0.00334
38 16 0.05351
38, 39 19 0.06355
38, 40 13 0.04348
38, 41 7 0.02341
39 19 0.06355
39, 40 25 0.08361
39, 41 5 0.01672
39, 42 1 0.00334
39, 43 1 0.00334
40 13 0.04348
40, 41 6 0.02007
40, 42 1 0.00334
41 1 0.00334
GD 0.95423
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DYF399S1 Count Frequency
18, 20, 24.1 1 0.00334
18, 22, 26.1 1 0.00334
18, 22, 27.1 2 0.00669
18, 22.1, 23 1 0.00334
18, 22.1, 24 1 0.00334
18, 23.1, 24 1 0.00334
18, 24, 24.1 2 0.00669
18, 25, 27.1 1 0.00334
18, 25.1 1 0.00334
18.2, 23, 25 1 0.00334
18.3, 23, 25 1 0.00334
19, 20, 25.1 1 0.00334
19, 20, 27 1 0.00334
19, 21, 23.1 1 0.00334
19, 21, 24.1 1 0.00334
19, 22, 22.1 1 0.00334
19, 22, 23 1 0.00334
19, 22, 28.1 1 0.00334
19, 23, 23.1 1 0.00334
19, 23.1, 24 2 0.00669
19, 24, 24.1 3 0.01003
19, 24, 25.1 2 0.00669
19, 24, 26.1 2 0.00669
19, 24, 27.1 1 0.00334
19, 24.1 1 0.00334
19, 24.1, 25 1 0.00334
19, 24.1, 25.1 1 0.00334
19, 25.1 2 0.00669
19.1, 20, 25 1 0.0033420, 21, 22, 23,
23.1 1 0.00334
20, 21, 22, 23.1 1 0.00334
20, 21, 23.1 1 0.00334
20, 21, 25 1 0.00334
20, 21, 26.1 1 0.00334
20, 21, 27 2 0.00669
20, 21.1, 23 2 0.00669
20, 21.1, 24.1 1 0.00334
20, 21.1, 25 1 0.00334
20, 22, 22.1 1 0.00334
20, 22, 24.1 2 0.00669
20, 22, 25.1 3 0.01003
20, 22, 27.1 1 0.00334
20, 22, 28.1 1 0.00334
20, 22.1, 24 2 0.00669
20, 23, 23.1 3 0.01003
20, 23, 24.1 3 0.01003
DYF399S1 Count Frequency
20, 23, 25.1 6 0.02007
20, 23, 26.1 2 0.00669
20, 23, 27.1 1 0.00334
20, 23, 28.1 1 0.00334
20, 23.1, 24 1 0.00334
20, 23.1, 27 1 0.00334
20, 24, 25 1 0.00334
20, 24, 25.1 3 0.01003
20, 24, 26.1 4 0.01338
20, 24, 27.1 2 0.00669
20, 24.1 3 0.01003
20, 24.1, 26 1 0.00334
20, 24.1, 26.1 3 0.01003
20, 24.1, 27 1 0.00334
20, 25 1 0.00334
20, 25, 26.1 2 0.00669
20, 25, 27.1 1 0.00334
20, 25.1 2 0.00669
20, 25.1, 26 2 0.00669
20, 25.1, 26.1 1 0.00334
20, 25.1, 28 1 0.00334
20, 25.1, 29.1 1 0.00334
20, 26, 26.1 2 0.00669
20, 26.1 3 0.01003
20, 26.1, 28.1 1 0.00334
20, 27, 27.1 1 0.00334
20.1, 21, 25 1 0.00334
20.1, 21, 25.1 1 0.00334
20.1, 22, 24 1 0.00334
21, 22 2 0.00669
21, 22, 22.1 2 0.00669
21, 22, 24 1 0.00334
21, 22, 24.1 2 0.00669
21, 22, 25.1 3 0.01003
21, 22, 26.1 3 0.01003
21, 22, 27.1 2 0.00669
21, 22, 29.1 1 0.00334
21, 22.1 1 0.00334
21, 22.1, 24 5 0.01672
21, 22.1, 26 1 0.00334
21, 23, 23.1 1 0.00334
21, 23, 25.1 4 0.01338
21, 23, 26.1 3 0.01003
21, 23, 27.1 2 0.00669
21, 23, 28.1 1 0.00334
21, 23.1 2 0.00669
DYF399S1 Count Frequency
21, 23.1, 24 3 0.01003
21, 23.1, 24.1 1 0.00334
21, 23.1, 25 1 0.00334
21, 23.1, 25.1 1 0.00334
21, 23.1, 27.1 1 0.00334
21, 24 1 0.00334
21, 24, 24.1 5 0.01672
21, 24, 25.1 4 0.01338
21, 24, 26.1 5 0.01672
21, 24, 27.1 4 0.01338
21, 24, 28.1 1 0.00334
21, 24.1 6 0.02007
21, 24.1, 25 2 0.00669
21, 24.1, 25.1 3 0.01003
21, 24.1, 26.1 2 0.00669
21, 24.1, 27.1 1 0.00334
21, 25, 25.1 3 0.01003
21, 25, 26.1 2 0.00669
21, 25, 27.1 1 0.00334
21, 25.1 3 0.01003
21, 25.1, 26.1 2 0.00669
21, 25.1, 28.1 1 0.00334
21, 26.1 2 0.00669
21, 26.1, 28.1 1 0.00334
21, 26.1, 29.1 1 0.00334
21, 27.1 2 0.00669
21, 27.1, 28 1 0.00334
21.1 1 0.00334
21.1, 22, 23 2 0.00669
22, 22.1 2 0.00669
22, 22.1, 25 1 0.00334
22, 23 2 0.00669
22, 23, 23.1 3 0.01003
22, 23, 24.1 6 0.02007
22, 23, 25.1 4 0.01338
22, 23, 27.1 1 0.00334
22, 23, 28.1 1 0.00334
22, 23.1 1 0.00334
22, 23.1, 24 1 0.00334
22, 23.1, 24.1 1 0.00334
22, 23.1, 25 1 0.00334
22, 23.1, 25.1 2 0.00669
22, 23.1, 26.1 1 0.00334
22, 23.1, 27.1 1 0.00334
22, 24, 25.1 1 0.00334
22, 24, 26 1 0.00334
22, 24, 28 1 0.00334
DYF399S1 Count Frequency
22, 24, 30.1 1 0.00334
22, 24.1 2 0.00669
22, 24.1, 25 4 0.01338
22, 24.1, 26.1 1 0.00334
22, 24.1, 27.1 1 0.00334
22, 25, 25.1 1 0.00334
22, 25, 26.1 2 0.00669
22, 25.1 2 0.00669
22, 25.1, 26.1 2 0.00669
22, 25.1, 27.1 1 0.00334
22, 26.1 1 0.00334
22, 26.1, 27.1 1 0.00334
22, 27.1 2 0.00669
22, 27.1, 28 2 0.00669
23 1 0.00334
23, 23.1, 25.1 1 0.00334
23, 23.2, 26.1 1 0.00334
23, 24 1 0.00334
23, 24, 24.1 4 0.01338
23, 24, 25.1 2 0.00669
23, 24, 26.1 1 0.00334
23, 24.1 1 0.00334
23, 24.1, 25 1 0.00334
23, 24.1, 25.1 2 0.00669
23, 25, 25.1 1 0.00334
23, 26.1 2 0.00669
23, 27.1 1 0.00334
23.1 1 0.00334
23.1, 24 1 0.00334
23.1, 24.1, 25.1 1 0.00334
24 1 0.00334
24, 24.1 1 0.00334
24, 25, 25.1 2 0.00669
24.1 1 0.00334
24.1, 26 1 0.00334
25 1 0.00334
26.1 1 0.00334
26.1, 27.1 1 0.00334
GD 0.99535
Table II. continuation . . . .
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DYS518 Count Frequency
32 1 0.00334
34 6 0.02007
35 16 0.05351
36 35 0.11706
37 66 0.22074
38 64 0.21405
39 42 0.14047
40 29 0.09699
41 26 0.08696
42 10 0.03344
43 3 0.01003
44 1 0.00334
GD 0.85340
DYS526a Count Frequency
12 19 0.06355
13 110 0.36789
14 100 0.33445
15 57 0.19064
16 12 0.04013
17 1 0.00334
GD 0.71318
DYS526b Count Frequency
32 1 0.00334
34 9 0.03010
35 29 0.09699
36 58 0.19398
37 68 0.22742
38 72 0.24080
39 38 0.12709
40 16 0.05351
41 5 0.01672
42 2 0.00669
44 1 0.00334
GD 0.82575
DYS626 Count Frequency
24 1 0.00334
26 1 0.00334
27 14 0.04682
28 21 0.07023
29 58 0.19398
30 84 0.28094
31 70 0.23411
32 24 0.08027
33 20 0.06689
34 4 0.01338
35 2 0.00669
GD 0.81307
DYS627 Count Frequency
17 6 0.02007
17.2 1 0.00334
18 19 0.06355
19 29 0.09699
20 39 0.13043
21 72 0.24080
22 69 0.23077
23 42 0.14047
24 16 0.05351
25 3 0.01003
26 1 0.00334
27 1 0.00334
28 1 0.00334
GD 0.83796
DYS449 Count Frequency
23 3 0.01003
24 1 0.00334
26 8 0.02676
27 14 0.04682
28 28 0.09365
29 51 0.17057
30 76 0.25418
31 62 0.20736
32 28 0.09365
33 16 0.05351
34 9 0.03010
35 1 0.00334
36 2 0.00669
GD 0.84173
DYS547 Count Frequency
43 3 0.01003
44 7 0.02341
45 8 0.02676
46 14 0.04682
47 38 0.12709
48 59 0.19732
49 55 0.18395
50 48 0.16054
51 39 0.13043
52 13 0.04348
53 8 0.02676
54 5 0.01672
55 1 0.00334
56 1 0.00334
GD 0.86472
DYS612 Count Frequency
30 1 0.00334
31.2 1 0.00334
32 1 0.00334
33 9 0.03010
34 11 0.03679
35 34 0.11371
36 49 0.16388
37 70 0.23411
38 65 0.21739
39 44 0.14716
40 12 0.04013
42 1 0.00334
42.2 1 0.00334
GD 0.83536
DYF403S1a Count Frequency
10, 11, 14 1 0.00334
10, 12, 14 1 0.00334
10, 12, 16 1 0.00334
10, 13, 14 1 0.00334
10, 13, 15 2 0.00669
10, 13, 16 3 0.01003
10, 14, 17 1 0.00334
10, 18, 20 2 0.00669
10, 19 1 0.00334
10.2, 11, 16 1 0.00334
10.2, 12, 16 1 0.00334
10.2, 12, 18 1 0.00334
10.2, 13, 18 1 0.00334
11, 12 1 0.00334
11, 12, 13 5 0.01672
11, 12, 14 2 0.00669
11, 12, 15 2 0.00669
11, 12, 16 1 0.00334
11, 13 4 0.01338
11, 13, 13.1 2 0.00669
11, 13, 14 2 0.00669
11, 13, 15 2 0.006689
11, 13, 16 3 0.0100334
11, 13, 18 2 0.006689
11, 13.1 1 0.0033445
11, 14 3 0.0100334
11, 14, 16 2 0.006689
11, 14, 18 1 0.0033445
11, 14, 19 2 0.006689
11, 15, 16 5 0.0167224
11, 15, 17 1 0.0033445
11, 15, 18 1 0.0033445
11, 16 4 0.0133779
11, 16, 17 3 0.0100334
11, 16, 19 1 0.0033445
11, 17, 18 1 0.0033445
11, 17, 19 1 0.0033445
11, 18 2 0.006689
11, 18, 19 1 0.0033445
12, 13 3 0.0100334
12, 13, 14 2 0.006689
12, 13, 15 3 0.0100334
12, 13, 16 8 0.0267559
12, 13, 17 5 0.0167224
12, 13, 18 1 0.0033445
12, 14 2 0.006689
12, 14, 15 1 0.0033445
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DYF403S1a Count Frequency
12, 14, 16 5 0.0167224
12, 14, 18 2 0.006689
12, 15 1 0.0033445
12, 15, 16 11 0.0367893
12, 15, 17 3 0.0100334
12, 15, 18 2 0.006689
12, 15, 20 1 0.0033445
12, 16 1 0.0033445
12, 16, 17 1 0.0033445
12, 16, 18 3 0.0100334
12, 16, 19 1 0.0033445
12, 17 3 0.0100334
12, 17, 18 3 0.0100334
12, 17, 19 3 0.0100334
12, 17, 20 1 0.0033445
12, 17, 22 1 0.0033445
12, 18 1 0.0033445
12, 18, 19 1 0.0033445
12, 18, 20 1 0.0033445
12, 19 1 0.0033445
12, 19, 20 2 0.006689
12, 19, 23 1 0.0033445
13 4 0.0133779
13, 14 5 0.0167224
13, 14, 15 4 0.0133779
13, 14, 16 2 0.006689
13, 14, 17 2 0.006689
13, 14, 18 1 0.0033445
13, 15 8 0.0267559
13, 15, 16 9 0.0301003
13, 15, 17 3 0.0100334
13, 15, 18 1 0.0033445
13, 16 4 0.0133779
13, 16, 17 8 0.0267559
13, 16, 18 2 0.006689
13, 16, 19 1 0.0033445
13, 17 6 0.0200669
13, 17, 18 2 0.006689
13, 18 1 0.0033445
13, 18, 20 1 0.0033445
13, 18, 22 1 0.0033445
13, 19 1 0.0033445
13, 20 1 0.0033445
13.3, 14, 16 1 0.0033445
14 4 0.0133779
14, 15 4 0.0133779
14, 15, 16 6 0.0200669
DYF403S1a Count Frequency
14, 15, 17 2 0.006689
14, 15, 18 1 0.0033445
14, 16 6 0.0200669
14, 16, 17 7 0.0234114
14, 16, 18 3 0.0100334
14, 16, 19 1 0.0033445
14, 17 3 0.0100334
14, 18 2 0.006689
14, 18, 20 1 0.0033445
15 2 0.006689
15, 15.3, 16 1 0.0033445
15, 16 3 0.0100334
15, 16, 17 5 0.0167224
15, 16, 18 2 0.006689
15, 17 3 0.0100334
15, 17, 18 4 0.0133779
15, 19 1 0.0033445
15.3, 16 1 0.0033445
16 1 0.0033445
16, 17 2 0.006689
16, 17, 19 1 0.0033445
17, 18 1 0.0033445
7, 15, 16 1 0.0033445
8, 11, 18 1 0.0033445
8, 12, 14 1 0.0033445
8, 12, 18 1 0.0033445
8, 15, 16 1 0.0033445
9, 10, 13 1 0.0033445
9, 12, 14 1 0.0033445
9, 12, 15 1 0.0033445
9, 12, 18 1 0.0033445
9, 13, 16 3 0.0100334
9, 14, 16 1 0.0033445
9, 20, 22 1 0.0033445
9.2, 12, 16 1 0.0033445
9.2, 12, 18 1 0.0033445
9.2, 13, 17 2 0.006689
GD 0.99044
DYF403S1b Count Frequency
43 2 0.00669
44 4 0.01338
45 1 0.00334
46 5 0.01672
47 6 0.02007
48 8 0.02676
49 31 0.10368
50 49 0.16388
51 43 0.14381
52 21 0.07023
53 18 0.06020
54 16 0.05351
55 13 0.04348
56 10 0.03344
57 15 0.05017
58 20 0.06689
59 21 0.07023
60 13 0.04348
61 3 0.01003
GD 0.91479
DYF404S1 Count Frequency
10 1 0.00334
11, 13 1 0.00334
11, 15 1 0.00334
12, 13 5 0.01672
12, 14 6 0.02007
12, 15 5 0.01672
12, 16 3 0.01003
13 10 0.03344
13, 14 29 0.09699
13, 15 33 0.11037
13, 16 32 0.10702
13, 17 6 0.02007
13, 18 2 0.00669
13.2, 15.2 1 0.00334
14 29 0.09699
14, 15 40 0.13378
14, 16 24 0.08027
14, 17 8 0.02676
14, 18 2 0.00669
14.2, 15.2 1 0.00334
15 21 0.07023
15, 16 15 0.05017
15, 17 7 0.02341
16 6 0.02007
16, 17 4 0.01338
16, 18 1 0.00334
17 3 0.01003
17, 18 1 0.00334
19 1 0.00334
8, 13 1 0.00334
GD 0.92413
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Table III. Pairwise FST values (below diagonal) and associated p-values (above diagonal) among 13 populations based on the same set of 34 Y-STR markers at significant level = 0.05.
Population Spain_Spanish Italy_Italian Hungary_Hungarian
Lithiuania_Lithuanian Latvia_Latvian Estonia_
EstonianNetherlands_
Dutch S.Africa_Xhosa Japan_Japanese Philippines_Filipino
Singapore_Chinese
Singapore_Indian
Singapore_Malay
Spain_Spanish * 0.34947 0.00000 0.00000 0.00000 0.00000 0.02673 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Italy_Italian 0.00123 * 0.14662 0.00168 0.00188 0.00079 0.03059 0.00000 0.00000 0.00000 0.00000 0.0001 0.00000
Hungary_Hungarian 0.02342 0.00586 * 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Lithiuania_Lithuanian 0.07283 0.03594 0.03609 * 0.61964 0.00218 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Latvia_Latvian 0.07406 0.03936 0.03525 0.00000 * 0.00257 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Estonia_Estonian 0.07386 0.04232 0.04641 0.01647 0.01223 * 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Netherlands_Dutch 0.0078 0.01383 0.03065 0.07548 0.07705 0.06912 * 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
S.Africa_Xhosa 0.14614 0.12511 0.11137 0.13237 0.136 0.1398 0.15709 * 0.00000 0.00000 0.00000 0.00000 0.00000
Japan_Japanese 0.10058 0.07523 0.07801 0.10399 0.10197 0.0978 0.10663 0.13725 * 0.00000 0.00000 0.00000 0.00000
Philippines_Filipino 0.06659 0.04448 0.06266 0.08694 0.08683 0.07877 0.08049 0.11844 0.06979 * 0.00000 0.00000 0.00000
Singapore_Chinese 0.07012 0.05319 0.06572 0.09119 0.09181 0.08257 0.08598 0.11849 0.07843 0.02379 * 0.00000 0.00000
Singapore_Indian 0.04651 0.02367 0.0249 0.04991 0.05141 0.05617 0.06097 0.10039 0.06607 0.05312 0.04676 * 0.00000
Singapore_Malay 0.05896 0.03706 0.05207 0.07339 0.0728 0.0628 0.07506 0.09759 0.05462 0.01019 0.01978 0.03967 *
p-values in bold and italics represent insignificant difference before and after applying the Bonferroni adjustment, respectively.
Table IV. AMOVA results for different Y-STR panels in the 13* populations.
Percentage of variation (%)
Within populations Among populations within groups Among groups
PPY 85.10 2.20 12.71
Yfiler 87.91 2.01 10.08
SMMY 88.39 1.69 9.80
RMY 96.20 0.82 2.98
Maximal 96.24 1.28 6.09
*13 population data were grouped according to their geographic position:Eastern Europe: Lithuania, Latvia, Estonia, HungaryWestern Europe: Spain, Italy, NetherlandsSoutheast Asia: Philippines, Singapore (Chinese), Singapore (Malay)South Asia: Singapore (Indian)East Asia: JapanSouth Africa: South Africa
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Table III. Pairwise FST values (below diagonal) and associated p-values (above diagonal) among 13 populations based on the same set of 34 Y-STR markers at significant level = 0.05.
Population Spain_Spanish Italy_Italian Hungary_Hungarian
Lithiuania_Lithuanian Latvia_Latvian Estonia_
EstonianNetherlands_
Dutch S.Africa_Xhosa Japan_Japanese Philippines_Filipino
Singapore_Chinese
Singapore_Indian
Singapore_Malay
Spain_Spanish * 0.34947 0.00000 0.00000 0.00000 0.00000 0.02673 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Italy_Italian 0.00123 * 0.14662 0.00168 0.00188 0.00079 0.03059 0.00000 0.00000 0.00000 0.00000 0.0001 0.00000
Hungary_Hungarian 0.02342 0.00586 * 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Lithiuania_Lithuanian 0.07283 0.03594 0.03609 * 0.61964 0.00218 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Latvia_Latvian 0.07406 0.03936 0.03525 0.00000 * 0.00257 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Estonia_Estonian 0.07386 0.04232 0.04641 0.01647 0.01223 * 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Netherlands_Dutch 0.0078 0.01383 0.03065 0.07548 0.07705 0.06912 * 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
S.Africa_Xhosa 0.14614 0.12511 0.11137 0.13237 0.136 0.1398 0.15709 * 0.00000 0.00000 0.00000 0.00000 0.00000
Japan_Japanese 0.10058 0.07523 0.07801 0.10399 0.10197 0.0978 0.10663 0.13725 * 0.00000 0.00000 0.00000 0.00000
Philippines_Filipino 0.06659 0.04448 0.06266 0.08694 0.08683 0.07877 0.08049 0.11844 0.06979 * 0.00000 0.00000 0.00000
Singapore_Chinese 0.07012 0.05319 0.06572 0.09119 0.09181 0.08257 0.08598 0.11849 0.07843 0.02379 * 0.00000 0.00000
Singapore_Indian 0.04651 0.02367 0.0249 0.04991 0.05141 0.05617 0.06097 0.10039 0.06607 0.05312 0.04676 * 0.00000
Singapore_Malay 0.05896 0.03706 0.05207 0.07339 0.0728 0.0628 0.07506 0.09759 0.05462 0.01019 0.01978 0.03967 *
p-values in bold and italics represent insignificant difference before and after applying the Bonferroni adjustment, respectively.
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