etude de la dissolution de la silice biogénique des agrégats. utilisation dans la reconstruction...
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Etude de la dissolution de la silice biogénique des agrégats.
Utilisation dans la reconstruction des flux de sédimentation de la silice
biogénique et du carbone dans la colonne d’eau.
Brivaëla MORICEAU
Supervised by Olivier RAGUENEAU
Introduction
Carbon cycleIntroduction
Deforestation
Combustion
Before the industrial era
The carbon cycle was balanced
Then: intense human activity
Increase of C in the
atmosphere (Berner and Berner 1996, Kump et al. 1999)www.ggl.ulaval.ca/personnel/bourque/s3/cycles.biogeochimiques.html
Atmosphere
Lithosphere
Photosynthesis Respiration
AbsorptionRespiration
Limestone and silicate alteration
Precipitation
Volcanicity
Buried
Biosphere
Hydrosphere
770 GtC
610 GtC
39 000 GtC
55 000 000 GtC
Introduction
Role of the ocean in the carbon cycle
SourcesSinks
Carbon exchanges
TSurface exchange
Physical
pHalcalinity
Chemical
Photosynthesis
Respiration
Biological
The global ocean retards the increase of carbon in the atmosphere
"Les Humeurs de l'Océan" magazine Pour la Science, 1998
Diatoms
Introduction
Biological pump of carbon
40-45% of the PP (Mann 1999)
aggregates and fecal pellets (Turner, 2002; Thornton 2002)
Basis of an efficient food web (Silver et al., 1978)
Important role of diatoms in the biological
pump of carbon
Diatoms
awi-potsdam.de/Carbon/calcif-d.html
Si + C
Influence of Influence of aggregation on aggregation on biogenic silica biogenic silica
(BSiO(BSiO22) ) dissolution? dissolution?
DSi
Si + C
Preservation
Mesopelagic zone
50%
DSi?
Depth of BSiODepth of BSiO22 recycling?recycling? Deep ocean
Euphotic zone
0 m
100 m
1000 m
several months
several years
10-100 years
Geological time scale
Organic carbon fluxes
ORFOIS
Dissolution parameters of
BSiO2
Parameterisation of global models
+ sedimentation rates of the sinking particles
Reconstruction of BSiO2 fluxes
Theoretical water column
Reconstruction of BSiO2 fluxes
In situ
Laboratory experiments
Mechanistic model
Impact of aggregation on
BSiO2 dissolution?
Impact of aggregation on the depth of the
BSiO2 recycling?
Role of diatoms in the Biological pump?
(Si/C)z = (Si/C)0 z0.41
Aggregate
Data base sediment trap
Framework of the PhD
Ragueneau et al. 2002
Which processes are
involved?
Validity of the experimental
measurements?
Semi-mechanistic model
Mechanistic model
AWI Bremerhaven Uta Passow and Michael Garvey
Organic carbon fluxes
Dissolution parameters of
the BSiO2
+ sedimentation rates of the sinking particles
Reconstruction of the BSiO2 fluxes
Theoritical water column
Reconstruction of the BSiO2 fluxes
In situ
Laboratory experiments
Mecanistic model
Impact of aggregation on BSiO2
dissolution?
Impact of aggregation on the depth of the BSiO2 recycling?
Role of diatoms in the Biological pump?
(Si/C)z = (Si/C)0 z0.41
Aggregate
Data base sediment trap
Ragueneau et al. 2002
Which processes are involved?
Validity of the experimental measurements?
Impact of aggregation on
BSiO2 dissolution?
2- Cohesion- TEP (Transparent Exopolymer Particles)
1- Collision- High cell density
- Differential sinking velocity
GLUE
How to make aggregates?
Measurement of the BSiO2 dissolution rate in aggregate: methods
Shanks and Edmondson 1989
12
Skeletonema costatum
3
Chaetoceros decipiens
Talassiosira weissflogii
Settling during 24-48 h
Step 2
4ℓ 1ℓ
Aggregate treatment
Free cell treatment
Step 1
Dissolution
13°C Dark
13°C Dark
roller table
Incubation without
aggregation
13°C Dark
shaker table
Manual transfer of aggregates into artificial seawater (no nutrients)
11
Cell poor medium
artificial seawater (no nutrients)
13°C Dark
shaker table
22
Experiments Measurement of the BSiO2 dissolution rate in aggregate: methods
aggregation
Dissolution Experiment
• BSiO2 • TEP
100 Aggregates
Free cells
Parallel measurements
Parameters that could possibly influence the BSiO2 dissolution
BSiO2 dissolution rate :
Si(OH)4 = f(t) Initial dissolution rate (Greenwood 2001)
Measurement of the BSiO2 dissolution rate in aggregate: methods
• number of bacteria • diatom viability
0
5
10
15
20
25
30
35
40
45
50
0 50 100 150 200 250 300time h
DS
i µM
aggregates 7a
aggregates 7b
Free cells
Moriceau et al. in revision
0
0.02
0.04
0.06
0.08
0.1
0.12
Thalassiosiraweissflogii
Chaetocerosdecipiens
Skeletonemacostatum
Average
BS
iO2
initi
al d
isso
lutio
n ra
te d
-1
freely suspended cells
aggregates
5
1
3
2 2
5
513
13 experiments on aggregates
5 experiments on freely suspended
diatoms3 diatom species
Statistical t-testSignificant decrease of the BSiO2 dissolution
rate
x 20.054 d-1
0.026 d-1
Measurement of the BSiO2 dissolution rate in aggregate: results and discussion
From Moriceau et al., in revision
0
10
20
30
40
50
0 200 400 600
time (hours)
% v
iab
ility
(1) The viability of the cells
Free cells
aggregates
Which parameters could provoke a decrease of the BSiO2 dissolution rate?
Measurement of the BSiO2 dissolution rate in aggregate: results and discussion
Nelson et co-workers (1976)
Evolution of the diatoms viability
coupled0%
10%20%30%40%50%60%70%80%90%
100%
0 200 400 600
time h
% o
f dis
solv
ed
BS
iO2
µM
dissolution experiment on T.
weissflogii
aggregates
Free cells
Number of cells alive Total number of cells
RBSiO2 for cells alive ~ 0Viability could explain the decrease of the BSiO2
dissolution rate in aggregates
Moriceau et al., in revision
From Moriceau et al. in revision
Organic coating
BSiO2
Internal organic matter
(2) Bacteria number
Patrick and Holding (1985)
Bidle and Azam (1999)
Role of bacteria in the BSiO2 dissolution
Measurement of the bacterial number / diatom cell
No possible differentiation between attached and free bacteria
BUT
Bacteria/diatom
0
20
40
60
80
100
120
140
Aggregate free cellsThe number of bacteria per diatom could explain
the decrease of the BSiO2 dissolution rate in
aggregates
Measurement of the BSiO2 dissolution rate in aggregate: results and discussion
(3) DSi concentration
outside aggregates: 5 to 40 µM
inside aggregates: 80 to 250 µM
Van Cappellen and Qiu, 1997b
Solubility of BSiO2 between 4°C and 25°C: 500 - 1800µM (Hurd
and Teyer 1975, Kamatani and Riley 1979, Van Cappellen and Qiu 1997a,b)
Brzezinski and co-workers 1997
DSi inside natural aggregates: 300 µM
DSi inside aggregates could explain the
decrease of the BSiO2 dissolution rate in
aggregates
DSi concentrations in the ocean = 0-200µM and average 70µM (NODC, www.nodc.noaa.gov/OC5/WOA01F) (Tréguer et al., 1995)
Measurement of the BSiO2 dissolution rate in aggregate: results and discussion
DSi
time
BSiO2 or DSi Concentration
Solubility (1200µM at 13°C)
Dissolution rate measured = Dissolution Diffusion+
DSi
Aggregate
3 phases
Free cell
2 phases
Decrease Decrease
0
0.02
0.04
0.06
0.08
0.1
Average
BS
iO2
dis
solu
tion
ra
te d
-1
free cells
aggregates
MODEL
Experimental measurement of the BSiO2 dissolution rate
Measurement of the BSiO2 dissolution rate in aggregate: results and discussion
University of Utrecht Philippe Van Cappellen and Goulven Laruelle
Organic carbon fluxes
Dissolution parameters of
BSiO2
+ sedimentation rates of the sinking particles
Reconstruction of BSiO2 fluxes
Theoritical water column
Reconstruction of BSiO2 fluxes
In situ
Laboratory experiments
Mecanistic model
Impact of aggregation on BSiO2
dissolution?
Impact of aggregation on the depth of the BSiO2 recycling?
Role of diatoms in the Biological pump?
(Si/C)z = (Si/C)0 z0.41
Aggregate Data base
sediment trap
Ragueneau et al. 2002
Which processes are involved?
Validity of the experimental measurements?
Modelling the BSiO2 dissolution in an
aggregate
RBSiO2 = Kdis f(viability,DSiagg)
2²²
1BSiO
aggeff
agg Rr
DSiDr
rrt
DSi
reteff fDD
Modelling an aggregateAggregate = sphere
Modelling an aggregate: model description
r
DSi
Decrease of the DSi diffusion solely
Decrease of the DSi diffusion + BSiO2 dissolution
DissolutionDiffusion
Viability = 0 no cell alive
RBSiO2 DSiagg = DSiext
Decrease of the BSiO2 dissolution solely
?
Moriceau et al. to be submitted a
Model Output
0.00
2.00
4.00
6.00
8.00
10.00
12.00
14.00
16.00
0 100 200 300time h
DS
i ex
t µ
M
S.costatum aggregates 7a
S.costatum aggregates 7b
Internal DSi concenration External DSi concentration
Modelling an aggregate: model description
DSiagg(r = ragg) = DSiext
RBSiO2 viability = 0 ; DSiagg = DSiext
0 0.1
0.20.3
0.4
0
100
200
3000
50
100
150
distance x (cm)time t (hours)
DS
iag
g µ
mo
l L-1
0.4
Freely suspended cells :10 nmol g-1BSiO2 s-1
Decrease of the dissolution rate Decrease of the DSi
diffusion
Moriceau et al. to be submitted a
kdis = 4 nmol g-1BSiO2 s-1 and fret = 150
kdis = 5 nmol g-1BSiO2 s-1 and fret = 125
WHY?
Modelling an aggregate: Diffusion
R2 = 0.7758
0
5000
10000
15000
20000
25000
0 5 10 15Kdis nmolSi s
-1 g-1BSiO2
TE
P µ
g X
eq l-1TEP
Complex composition
Chemical binding
Geometry of the aggregate Dachs and Bayona 1998
Decrease of the diffusion of O2 from
the outside to the inside of the aggregate
DSi
fret = 150 realistic ??
Brzezinski et al. 1997 fret = 20-200Calculation using Fick’s Law fret = 33-600
YES
Moriceau et al. in revision
n
eq
aggviableBSiOdisBSiO DSi
DSifMWBSiOkR
1110
1 622
2
BSiO2 dissolution rate inside an aggregate
Dissolution coefficient
Solubility of the BSiO2
Porosity of an aggregate
Molecular weight of the BSiO2
Number of living cells Total number of cells
BSiO2 concentration
DSi concentration
Modelling an aggregate: decrease of the BSiO2 dissolution
2- RBSiO2 varies with the DSi concentration inside the aggregate
3- RBSiO2 varies with the DSi concentration inside the aggregate and depends on the viability of the aggregated cells
Impact of the high DSiagg and
of the high viability of the aggregated cells
fviable = 0
n
eq
aggviableBSiOdisBSiO DSi
DSifMWBSiOkR
1110
1 622
2
variable
m = 0.5-2
variablefviable = 0.4
0
2
4
6
8
10
12
aggregate free cell
Kd
is n
mo
l g-1
BS
iO2 s
-1
undersaturationdegree
apparent rate
0
2
4
6
8
10
12
aggregate free cell
kd
is n
mo
l g-1
BS
iO2 s
-1
viability
undersaturationdegree
apparent rate
1- DSi concentration inside the aggregate
Kdis = 6 nmol g-1BSiO2 s-1
and fret = 150
2- viability of the cells inside the aggregate
Kdis = 8-10 nmol g-1BSiO2 s-1
and fret = 200-150
Modelling an aggregate: decrease of the BSiO2 dissolution rate
33-66 % of the decrease of the BSiO2 dissolution rate is explained by the viability
16-33 % of the decrease of the BSiO2 dissolution rate is explained by
the high DSi concentration inside the aggregate
From Moriceau et al. to be submitted a
Impact of aggregation on the depth of the BSiO2 recycling?
Organic carbon fluxes
Dissolution parameters of
BSiO2
+ sedimentation rates of the sinking particles
Reconstruction of BSiO2 fluxes
Theoritical water column
Reconstruction of BSiO2 fluxes
In situ
Laboratory experiments
Mecanistic model
Impact of aggregation on BSiO2
dissolution?
Impact of aggregation on the depth of the BSiO2 recycling?
Role of diatoms in the Biological pump?
(Si/C)z = (Si/C)0 z0.41
Aggregate
Data base sediment trap
Ragueneau et al. 2002
Which processes are involved?
Validity of the experimental measurements?
Return to the LEMAR Olivier RAGUENEAU
Validity of the experimental measurements?
0
1000
2000
3000
4000
5000
6000
0% 50% 100%%BSiO2
de
pth
mImpact of the decrease of the
BSiO2 dissolution rate in aggregates
Aggregates s = 100 m d-1
R = 0.026 d-1
Freely suspended cells s = 1 m d-1 Smayda 1970 R = 0.054 d-1 Measured in this study for FC
Aggregates s = 100 m d-1 Alldredge and Gotschalk 1988
R = 0.054 d-1 Measured in this study for FC
25% 50%
BSiO2 flux in the water column: methods
Implication for paleoceanography
Implication for primary productionAggregates form the majority of
the sedimentation flux s
Important impact of the decrease of the BSiO2
dissolution rate in aggregates
Alldredge and Gotschalk 1988
Measured in this study for aggregate
From Turner 2002
Composition of the sedimentation flux
BSiO2 flux in the water column: methods
0
100
200
300
400
500
600
700
800
900
1000
0% 20% 40% 60% 80% 100%
%BSiO2d
epth
m
free cells
aggregates
feaces
Large free cells
total flux
Ragueneau et al., to be submitted
2 groups of particles to reconstruct the BSiO2 fluxes:
Large particles (LP)
Free cells (FC)
Which sites? Our reconstruction implies a known BSiO2 production
BSiO2 flux in the water column: methods
Weight % BSiO2 in sediments : 8000 data pointsAnnual BSiO2 and Corg fluxes in the water column: 200 data points
PAP
SACCAPFPNACC POOZ
APFA
BATS
OSP
EqPac
Reasonable estimates of annual BSiO2 production : 9 data points
SINOPS www.Pangaea.de
Moriceau et al., to be submitted b
0
500
1000
1500
2000
2500
3000
3500
4000
4500
0% 50% 100%%BSiO2
De
pth
m
model % BSiO2
APFP BSiO2 0
1000
2000
3000
4000
5000
6000
0% 50% 100%
%BSiO2 D
epth
m
model % BSiO2
SACC
0
1000
2000
3000
4000
5000
6000
0% 50% 100%%BSiO2
De
pth
m model %BSiO2
OSP
Model output
Kdis fixed
BSiO2 flux in the water column: results and discussion
18%700large
particles
82%5free cell
% BSiO2
S m d-1
36%60large
particles
64%2free cell
% BSiO2
S m d-1
41%700large
particles
59%0.5free cell
% BSiO2
S m d-1
s consistent with the literature
Kdis can be used in models
Repartition can be obtained from the model not from in situ
measurements
Moriceau et al., to be submitted bMoriceau et al., to be submitted b
PAP
SACCAPFP
NACC POOZAPFA
BATSOSP
EqPac
0
1000
2000
3000
4000
5000
0% 50% 100%
%BSiO2
De
pth
m POOZSFC=5SFC=2SFC=1SFC=0.5SFC=0.1
FC sinking rate
Moriceau et al., to be submitted
LP sinking rate
0
1000
2000
3000
4000
5000
0% 50% 100%
%BSiO2
De
pth
m
POOZ
SLP=45
SLP=65
SLP=100
SLP=200
SLP=500
repartition of the BSiO2
0
1000
2000
3000
4000
5000
0% 50% 100%% BSiO2
De
pth
m
POOZ75%FC 25%LP72%FC 28%LP65%FC 35%LP55%FC 45%LP60%FC 40%LP
Moriceau et al., to be submitted
Sensibility tests
Robustness of the model
BSiO2 flux in the water column: results
Moriceau et al., to be submitted
PAP
SACCAPFP
NACC POOZAPFA
BATSOSP
EqPac
With the same BSiO2 Production rate
Different ratios of BSiO2 preserved in sediments
Importance of particle dynamics
POOZNACC
APFA
EqPac
OSP
BATSAPFP
SACC
PAP
0%
10%
20%
30%
40%
50%
0 200 400 600 800
WML
% B
SiO
2 in
teg
rate
d t
o L
P
y = 0.7091x + 0.0099
R2 = 0.7106
0%
10%
20%
30%
40%
50%
0% 10% 20% 30% 40% 50%
%of the BSiO2 production integrated to LP
%B
SiO
2 a
t th
e s
ea
floo
r
• Sedimentation flux intensity depends on the ability of cells to enter into large particles
• Recycling or DSi availability depends on the amount of cells that can stay freely suspended
Sedimentation flux
Particle dynamics
winter mixed layer = 200 m
maximum amount of BSiO2 integrated into large
particles
BSiO2 flux in the water column: results
Moriceau et al., to be submitted bMoriceau et al., to be submitted b
Role of the diatoms in the biological pump?
Still in the LEMAR Still working with Olivier RAGUENEAU
Organic carbon fluxes
Dissolution parameters of
BSiO2
+ sedimentation rates of the sinking particles
Reconstruction of BSiO2 fluxes
Theoritical water column
Reconstruction of BSiO2 fluxes
In situ
Laboratory experiments
Mecanistic model
Impact of aggregation on BSiO2
dissolution?
Impact of aggregation on the depth of the BSiO2 recycling?
Role of diatoms in the Biological pump?
(Si/C)z = (Si/C)0 z0.41
Aggregate
Data base sediment trap
Ragueneau et al. 2002
Which processes are involved?
Validity of the experimental measurements?
Antia et al. (2001)
Suess (1980)Betzer et al. (1984)Pace et al. (1987)Berger et al. (1987)Antia et al. (2001)
Antia and co-workers, 2001
Different methods used to determine the carbon flux
High variability between methods
From BSiO2 fluxes to C fluxes in the water column
How to evaluate the ratio of carbon that could reach the maximum depth of the Wind Mixed Layer (WML)?
Is it possible to reconstruct the carbon flux from the BSiO2 fluxes?
Actual calculation of carbon fluxes problems
YES
Ragueneau et al., 2002
(Si/C)z = (Si/C)0 . z0.41
From BSiO2 fluxes to C fluxes in the water column
0
1000
2000
3000
4000
5000
0% 50% 100%C
De
pth
m
model %C
pooz C
0
1000
2000
3000
4000
5000
6000
0% 50% 100%BSiO2
Dep
th m
model % BSiO2
pooz BSiO2
ZOOM
BSiO2 fluxes different types of particles
Good reconstruction of the C fluxes
Reconstruction of the carbon sedimentation fluxes
0500
10001500200025003000350040004500
0% 50% 100%%BSiO2 %C
De
pth
m
model % BSiO2
APFP BSiO2
model %C
APFP C
0100200300400500600700800900
1000
0% 50% 100% C
De
pth
m
model %C
APFP C
From BSiO2 fluxes to C fluxes in the water column
Ragueneau et al., to be submitted
(Si/C)z = (Si/C)0 z0.41
Moriceau et al., to be submitted b
Ragueneau et al., to be submitted
PAP
SACCAPFP
NACC POOZAPFA
BATSOSP
EqPac
c. POOZ site
0
200
400
600
800
1000
1200
1400
0 0.5 1 1.5 2 2.5 3
POC flux (mol m -2 yr -1)
Dep
th (
m) Traps
Betzer
Suess
Moriceau
Schlitzer
d. SACC site
0
200
400
600
800
1000
1200
1400
0 0.5 1 1.5 2 2.5 3 3.5 4
POC flux (mol m-2 yr-1)
De
pth
(m
)
Traps
Betzer
Suess
Moriceau
Schlitzer
e. OSP site
0
200
400
600
800
1000
1200
1400
0 0.5 1 1.5 2 2.5 3 3.5 4
POC flux (mol m-2 yr-1)
De
pth
(m
) Traps
Betzer
Suess
Moriceau
Schlitzer
f. PAP site
0
200
400
600
800
1000
1200
1400
0 0.5 1 1.5 2 2.5 3 3.5 4
POC flux (mol m -2 yr -1)
Dep
th (
m) Traps
Betzer
Suess
Moriceau
IM (Schlitzer)
Comparison with other methods of
calculation
Our method:
Lower estimation of the carbon flux
From BSiO2 fluxes to C fluxes in the water column
Ragueneau et al., to be submitted
PAP
SACCAPFP
NACC POOZAPFA
BATSOSP
EqPac
(a)
0
0.1
0.2
0.3
0.4
0.5
0 100 200 300 400
PP (g C m-2 yr-1)
e at
100
m
(b)
0
0.1
0.2
0.3
0.4
0.5
0 100 200 300 400
PP (g C m-2 yr-1)
e a
t W
WM
L
0.00
0.05
0.10
0.15
0 1 2 3 4
Suess 1980This study
Betzer et al., 1984Schlitzer et al., 2002 calculated at 133 m
e100m decreases with PP e100m increases with PP
e100m is constant
A trend between eWWML and PP still exists in our study
From BSiO2 fluxes to C fluxes in the water column
Ragueneau et al., to be submitted
Importance of the seasonality
SI = 6 – number of months necessary to reach half of the anual PP
Berger and Wefer, 1990
1 2 3 4 5 6
PP
months
Constant PP SI ~0
Pulsed PP SI ~ 5
Pulsed PP export more than constant PP
50% of annual PP
From BSiO2 fluxes to C fluxes in the water column
0
0.1
0.2
0.3
0.4
0.5
0 100 200 300 400
(c)
y = 0,0289x + 0,0100R2 = 0,75 p = 0,0025
0.00
0.05
0.10
0.15
0 1 2 3 4
SI/(WWML*PP)
e a
t W
WM
L
0
50
100
150
200
0 100 200 300 400 500 600
Export ratio depends on the seasonality index
Aggregation is a seasonal process
Need to study the sedimentation flux in a seasonal time scale
Importance of the seasonality
From BSiO2 fluxes to C fluxes in the water column
Ragueneau et al., to be submitted
Conclusions et perspectives
Organic carbon fluxes
Reconstruction of BSiO2 fluxes
Impact of aggregation
on BSiO2 dissolution?
Impact of aggregation on the depth of the BSiO2
recycling?
Role of diatoms in the Biological
pump?
Dissolution parameters of BSiO2 in the
Aggregate
Which processes are
involved?
Validity of the experimental
measurements?
Organic carbon fluxes
Reconstruction of BSiO2 fluxes
Impact of aggregation on BSiO2 dissolution?
Impact of aggregation on the depth of the BSiO2
recycling?
Role of diatoms in the Biological pump?
Dissolution parameters of BSiO2 in the
Aggregate
Which processes are involved?
Validity of the experimental
measurements?
The BSiO2 dissolution rate is decreased by a factor of 2 for aggregated
diatoms
The decrease of the DSi diffusion coefficient by a factor of 150
The high viability of aggregated cells
The high DSi concentration inside aggregates
The low number of bacteria per diatom
Organic carbon fluxes
Reconstruction of BSiO2 fluxes
aggregation decrease the BSiO2
dissolution by a factor of 2
Impact of aggregation on the depth of the BSiO2
recycling?
Role of diatoms in the Biological pump?
Dissolution of BSiO2 in the
Aggregate
Validity of the experimental
measurements?
The BSiO2 dissolution depth depends on the capacity of the cells to aggregate or to stay freeAggregation influences the depth of the BSiO2 recycling due to aggregate sinking and dissolution rates
YESThe experimental measurements are accurate and can be used in a global
model
Importance of particle dynamics
Organic carbon fluxes
Reconstruction of BSiO2 fluxes
Experimental measurement are accurate
Role of diatoms in the Biological
Pump?Capacity of diatoms to transport carbon
Capacity of diatoms to Protect their carbon
aggregation decrease the BSiO2
dissolution by a factor of 2
Dissolution of BSiO2 in the
Aggregate
Aggregation influences the depth of the BSiO2 recycling due to the
sinking and dissolution rates
Importance of the seasonality
Post Doc CARBALIS
Construction of a semi-mechanistic
model
Construction of a mechanistic model
Post Doc CARBALISCarbon and Ballasts Interactions during Sinking:
an Experimental and Modelling Approach
The overall objective of CARBALIS is to improve our understanding of POC and ballasts
interactions during sinking throughout the mesopelagic and deep layers of the ocean
Experimental phase
Modelling phase
A 3 years Marie Curie Fellowship
Supervised by O. Ragueneau
At Stony Brook University (New York)
At Stony Brook University (New York)
+ At the IUEM
The role of bacteria in the recycling of BSiO2 during sedimentation
Collaboration with C. Tamburini
Coupled experiments: BSiO2 dissolution + C degradationCollaboration with C. Lee, M. Goutx, U. Passow
CARBALIS
Construction of a mechanistic model
Collaboration with R. Armstrong
Use of the mechanistic model in 1D model
Collaboration with P. Pondaven, K. Soetaert
External carbon – BSiO2
Internal carbon – BSiO2
Modelling
Thank You!!Olivier Ragueneau
Uta Passow
Karline Soetaert
Madeleine Goutx
Catherine Jeandel
Marion
Laurent Memery
Morgane gallinari
Michael
Sorcha
Joëlle
Jonathan
Pierro
Pierre U
Matthieu
Aude Leynaert
Sophie
Sabine
Gwen
Géraldine
Eva
Marie
Tristan
Le LEMAR
L’AWI
Gerald
Anja (les 2)
Ma mère
Ma sœur
Béatrice
Ma famille
Loïc
Danielle, Alain et Suzanne
L’IFREMER d’Argenton
L’équipe de BIOZAIR
Christian Tamburini
Cathy
L’équipe de marseille
Philippe Van Cappellen
Goulven Laruelle
Jim greenwood
L’équipe de Si-Web
Les microbios et les poissons
Monique
Bob
Raoul
Julien
Ben
Jacques
Mathieu
Hélène
Anne
Annick
Rudolph
Pascal Morin
Pierre Lecorre
Sandrine
Stephane
Martial
Philippe
Christophe
Aurore
Schumina
Michaela
Et bien d’autres…
Diatoms aggregates
• The dissolution rate of the BSiO2 is 2 times
lower in aggregates
• The diffusion coefficient of the DSi is decreased by 150 in aggregates
• Validity of the experimental measurements
Conclusion
How does aggregation influence the BSiO2
dissolution?
Impact of aggregation on the depth of the BSiO2 recycling?
The depth of the BSiO2 recycling depends on the amount of diatoms that aggregate or stay free
In a model:
Importance of the particle dynamics
Importance of the particle dissolution kinetic
In aggregate BSiO2 dissolution is 2 times lower
Optimum wind mixed layer maximum depth for the formation of large particles: 200 m
Conclusion
Reconstruction of the C fluxes from BSiO2 fluxes
Construction of a semi-mechanistic model
We are able to evaluate the C flux at each depths
We are able to evaluate the export efficiency down to the mixing zone
Conclusion
C-Si interactions during degradation
Intracellular carbon degrades after BSi dissolution?? or with the BSi??
Marker Lipids
Extracellular C-BSi interaction: NSF-CNRS collaboration MedFlux
Organic coating
BSi
Internal organic matter
y = -0,092x + 5,0516
3
4
4
5
5
6
6
0 2 4 6time days
lipid
s µ
M
y = 0,0185x + 4,33373
4
5
6
0 2 4 6time days
lipid
s µM
02468
1012
0 50 100 150time h
Si(
OH
)4
0
5
10
15
20
0 50 100 150time
Si(O
H)4
Particular lipids
DSi
Collect during 16h Collect during 48h
Madeleine GOUTX
Catherine GUIGUE
Plan
• Introduction• Etude de la dissolution de la BSiO2
dans les agrégats de diatomées– Expérimentations– Modèle
• Impact sur les flux de silice• Impact sur les flux de carbone• Conclusion et Perspectives
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-90 -40 10 60
Latitude
TE wi
th EP f
rom La
ws
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
LatitudeTE
with E
P from
Schli
tzer
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0.05
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
CaCO
3 flu
x
0.00
0.25
0.50
0.75
1.00
1.25
1.50
1.75
2.00
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
BSiO
2 flu
x
TE
with
EP
from
Laws
TE
with
EP
from
Schlitz
er
CaCO
3flux
BSiO
2flux
Latitude
LatitudeLatitude
Latitude
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0.15
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0.25
0.30
-90 -40 10 60
Latitude
TE wi
th EP f
rom La
ws
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
LatitudeTE
with E
P from
Schli
tzer
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
CaCO
3 flu
x
0.00
0.25
0.50
0.75
1.00
1.25
1.50
1.75
2.00
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
BSiO
2 flu
x
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
Latitude
TE wi
th EP f
rom La
ws
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
LatitudeTE
with E
P from
Schli
tzer
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
CaCO
3 flu
x
0.00
0.25
0.50
0.75
1.00
1.25
1.50
1.75
2.00
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
BSiO
2 flu
x
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
Latitude
TE wi
th EP f
rom La
ws
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
LatitudeTE
with E
P from
Schli
tzer
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
CaCO
3 flu
x
0.00
0.25
0.50
0.75
1.00
1.25
1.50
1.75
2.00
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
BSiO
2 flu
x
0.00
0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
Latitude
TE wi
th EP f
rom La
ws
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0.05
0.10
0.15
0.20
0.25
0.30
-90 -40 10 60
LatitudeTE
with E
P from
Schli
tzer
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
0.40
0.45
0.50
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
CaCO
3 flu
x
0.00
0.25
0.50
0.75
1.00
1.25
1.50
1.75
2.00
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
BSiO
2 flu
x
TE
with
EP
from
Laws
TE
with
EP
from
Schlitz
er
CaCO
3flux
BSiO
2flux
Latitude
LatitudeLatitude
Latitude
Recent studies using a consequent data base demonstrated the better
efficiency of coccoliths to transport carbon to the deep sea
Coccolithophorids are more efficient
The carbon attached to diatoms could be more labile
Ragueneau et al, 2002
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0.20
0.25
0.30
-90 -40 10 60
Latitude
TE
wit
h E
P fr
om L
aws
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0.05
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0.15
0.20
0.25
0.30
-90 -40 10 60
Latitude
TE
wit
h E
P fr
om S
chli
tzer
0.000.05
0.100.150.20
0.25
0.30
0.350.400.450.50
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
CaC
O3 fl
ux
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0.25
0.50
0.75
1.00
1.25
1.50
1.75
2.00
-90 -70 -50 -30 -10 10 30 50 70 90
Latitude
BSi
O2 fl
ux
TE
wit
h E
P f
rom
Law
s
TE
wit
h E
P f
rom
Sch
litz
er
CaC
O3 f
lux
BS
iO2
flux
Latitude
LatitudeLatitude
LatitudeCoccolithophorids are more
efficientDiatoms are more efficient
The respective role of diatoms and coccolithophorids in the transfer efficiency depend on how the export production is estimated
DSi
Shaking
DSi + number of cells
Aggregates and cell size