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UK PubMed CentralImplementation and Support
Rob Rowbotham, British Library
Ross MacIntyre, MIMAS, The University of Manchester
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What is UKPMC?
The UK-version of PubMed Central Offers the PubMed Central collection of ~1,000,000
full-text life science articles, freely available online irrespective of library holdings
US and UKPMC mirror each other’s content
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Who provides UKPMC?
The British Library together with the University of Manchester and the European Bioinformatics Institute
The service is hosted by MIMAS, the national academic data centre
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Who funds UKPMC?
The development of UKPMC is funded by principal funders of biomedical research in the UK
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Overview
UKPMC Implementation
UKPMC Manuscript Submission System (UKMSS)
XML Conversion suppliers
Loading and managing grantees data
Setting up the help desk
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UKPMC Implementation
UKMSS
OA
Document Ingest
Researchers
Authors
Publishers
XML, XML, HTMLHTML
SGML, SGML, XML, XML, HTMLHTML
Free public access
PDF, MS PDF, MS WordWord
PDFPDF
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UKPMC = pPMC + SQL Database1st Production Instance
pPMC Web Application
PMC at NCBI
pPMC Database and Utilities
pPMCCollector
(C++)
SQL Database
NCBI Entrez
XMLArticle and
Table of ContentsXSLT
IIS(C++ CGI
and MSXML 4.0
SP2)
User
pPMC Modules
pPMC Loader
(C++ and Xerces)
Legend
NCBI Hosted Modules
Local Modules
pPMC Module
Database Data Flow
XSLT Transform
pPMC webUtil(C++)
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Google and the sitemap hiatus
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UKPMC Manuscript Submission System
Two routes to get manuscripts in to UKPMC:
1. Direct via publisher
e.g. publish in an open access journal
costs associated with ‘open access’ publishing met from research funding
2. Author - upload a copy of the final manuscript via the UK Manuscript Submission System
UK Manuscript Submission System
Go Live 8th January 2007
Distribution of usernames and passwords
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XML Conversion service suppliers
UKMSS submissions accepted in various formats – mainly PDF and MS Word
Documents are converted to XML using specialist conversion service
Suppliers selected Oct 2006 – contract start 1st Jan 2007
Selection criteria – price, quality, speed, service level
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Grantee Data Load
8 Funding bodies lead by Wellcome Trust
Grant data supplied - 9000+ Users, 16000+ Grants in total
Load to the UKMSS Admin system
Distribution of usernames and passwords
Updates
Phase 2 – Implementation of Microsoft CRM
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The Help Desk
Core responsibilities:
XML Conversion service QA Help Desk support
Recruitment of staff
Training
Other tasks/Documentation
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Contact us
UKPMC helpdesk [email protected] / 01937 546699 further information available @ ukpmc.ac.uk
We welcome feedback, we want to improve our service with your comments