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2054-13
Structure and Dynamics of Hydrogen-Bonded Systems
Chick WILSON
26 - 27 October 2009
Chemistry Dept., West CHEM Research Sch.University of Glasgow, Joseph Black Building.
Glasgow G12 8QQU.K.
The Evolution of Hydrogen Bonds in Molecular Materials under ChangingExternal Conditions by Neutron Diffraction and Complementary Methods
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The Evolution of Hydrogen Bonds in Molecular Materials under Changing External Conditions by Neutron Diffraction and Complementary Methods
Chick WilsonDepartment of Chemistry and WestCHEM Research School, University of Glasgow
Structure and Dynamics of Hydrogen Bonded Systems, ICTP Trieste, October 2009
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The Problem
• Even Excellent experiments can lead to ambiguous interpretation
• We use multi-condition X-ray and neutron diffraction (usually single crystal), including high resolution X-ray
• But we can still have ambiguities
• We also constrain our systems to be in the solid state
• Can modern computational chemistry methods help us to understand better our experiments?
Schmidtmann et al, CrystEngComm, 2007, 9, 743
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One Concept: Evolving Molecules in the Hall of Mirrors
Structural Evolution• Materials whose structure or properties change with
external variables
Materials• Molecules or molecular complexes with “tuneable”
atoms – often protons
Our “Laboratory”• We work in the solid-state – periodic
crystalline arrays – The Hall of MirrorsTechniques• Crystallisation – self-assembly in the
solid-state• Variable condition diffraction – X & n• Solid-state quantum chemical
calculations
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Pushing the Limits of Diffraction Techniques
• X-ray single crystal diffractionStrong focus on variable temperature for examining evolving structures
• Neutron Single crystal diffractionMultiple condition, shorter data collection times
• High throughput X-ray diffractionPowder and single crystal
• High throughput neutron single crystalExploiting new instrumentation
• Neutron powder diffractionJust becoming possible for these materials
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Motifs with Predictable (and tuneable?) HB Properties?
• COOH dimers – Disorder
• Short, strong HB – Transfer, Migration
• Proton sponges –Proton Transfer
• “bifurcated” motifs
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An old favourite* - proton migration in urea-phosphoric acid150K
Δ~0.07Å
350KΔ~0, centred
“H…O”
“O–H”
VT neutron diffraction
Neutron, 15K O-H, 1.158Å O...O, 2.41Å H…O, 1.267Å
Plane-wave DFT O-H, 1.105Å O...O, 2.42Å H…O, 1.329ÅIsolated molecule O-H, 1.004Å O...O, 2.65Å H…O, 1.604Å
Computational Chemistry of the short HB
* But still not fully understood!Wilson & Morrison, Chem Phys Letters, 2002, 362, 85
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Raise the stakes, raise the Temperature (MD-DFT)
UPA PW-DFT MD
-0.1-0.05
00.050.1
0.150.2
0.25
0 100 200 300 400
Temperature (K)
Del
ta (A
ngst
rom
s)
calculatedexperimental
0 100 200 300 4001.0
1.2
1.4
1.6
1.8
2.0
2.2
2.4
2.6
Timestep (ps)
Dis
tanc
e (Å
)
40K
0 100 200 300 400
1.0
1.2
1.4
1.6
1.8
2.0
2.2
2.4
2.6
Timestep (ps)
Dis
tanc
e (Å
)337K
Morrison et al, JACS, 2005, 127, 4042
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Imaging Hydrogen Bonds in UPA: added value from X/n
Joint X-n Analysisof proton/electron density
evolution in hydrogen bonds
Parkin, Harte, Goeta & WilsonNew J Chem, 2004, 28, 718-721
Migration can also be followed by XRD - and additional information obtained
about the nature of the electron density in the HB
0.9
1
1.1
1.2
1.3
1.4
100 150 200 250 300 350
T /K
O5-
H1
bond
leng
th /Å
Refined neutron bond length Refined X-ray bond-length X-ray fourier peak position
Urea-phosphoric acid / uronium phosphate
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Position of proton in the short N-H…O HB tuned by
chemistry and by
temperature
Designing Molecular Complexes for proton migration
Pentachlorophenol: Methylpyridines
Steiner, Majerz & Wilson, Chem Comm, 2000, 1231Angewandte Chemie, 2001, 40, 2651
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First observed centred N-H-O HBobtained by thermal tuning at 95K
Temperature tuning of proton migration
Steiner, Majerz & Wilson, Angewandte Chemie, 2001, 40, 2651
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O211O
281
DMANH+
N-H-N
d-CP
O211O28
1
DMANH+
N-H-N
d-CP
A continuum in the hydrogen bond of a proton sponge complex
1,8-bis(dimethylamino)naphthalene and 4,5-dichlorophthalic acid
From proton disorder to proton migration?
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and “migration”?
DMAN:DCP – only X-ray data so far – ambiguous!
Disorder/transfer?
Tempting, but unproven and
unsubstantiated – VT neutron collected
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O1
C1
N7
I8
C2
N2
O22O21
C6O62
1.2
1.45
T = 340K
Picric acid forms charge transfer complexes with many organic compounds, some of which also exhibit thermochromism
2-iodoanilinium picrate: colour change at ~320K
Application to physical changesT = 300K
O1
C1
N7
I8
C2
N2
O22O21
C6O62
0.85
1.8
Only obvious structural change on thermochromicPT is an apparent H migration..
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Look for disorder, find migration – isonicotinamidium formate
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Potassium hydrogen maleate – centred HB
p
T
200K
50K
2kbar 4kbar
125K
300K
Wilson, Thomas & Morrison, Chem Phys Letters, 2003, 381, 102
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Crystal Engineering – Predictable HB Motifs?
• COOH dimers; carboxylic acids
• Bifurcated HB
• HB-matching – Etter, Aakeroy• [Short, strong HB]• Metal-mediated• Supramolecular synthons
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Designing Molecular Complexes for HB proton transfer
Chloranilic acid:Methylpyridines(lutidines, picolines)
• Supramolecular motifs (different in 1:1 & 2:1 complexes)
Adam et al, CrystEngComm, in press
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Chloranilic acid:n.Methylpyridine complexes
Adam et al, CrystEngComm, in press
Hydrogen bonded hydrogen almost always transferred – charge/resonance assisted HB
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Designing Molecular Complexes: pKa matching?
Pentachlorophenol:Lutidine• pKa matching to “predict proton transfer?• Pattern difficult to discern in solid-state
Schmidtmann & WilsonCrystEngComm, 2008, 10, 177
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Designing Molecular Complexes for proton disorder in HB
Tuning proton disorder • 4-dimethylaminobenzoic acid (4DMBA)
• Proton disorder in native structure
Parkin et alCryst Growth Design2007, 7, 531
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4-dimethylaminobenzoic acid (4DMBA)
Different disorder patterns in molecular complexes 4DMBA-4DMBA:35DNB-35DNB
with 3,5-dinitrobenzoic acid4DMBA NO disorder
BUT the 3,5-dinitrobenzoic acid DOES show disorder
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Asymmetry only introduced in the solid state - in the local crystalline environment
H disorder/transfer in solid-state HB dimers
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Modelling Disordered Protons: from T dependence to ΔE
Modelling of HB H atom in carboxylic acid dimers clearly breaks down at higher T– second (disordered, tautomeric) site
Clearly a split site
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Modelling Disordered Protons: from T dependence to ΔE
Site occupancies can be modelled in simple Van’t Hoff
model and Energy Asymmetry extracted
This allows us to establish a Tautomerism energy scale in HB
carboxylic acid dimers
Experimentally, and...
Wilson et al, Chem Phys Letts, 1996, 253, 103 & New J Chem, 2006, 30, 979
BA - Energy asymm -ΔH=–0.50(4)kJmol-1
Fully ordered <20K
Cl-BA - AsymmΔH=–1.3kJmol-1
Fully ordered <80K
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100K 170K
240K 295K
VT XRD: 2,4,6-trimethylbenzoic acid
tmba, ΔH = –2.5(3) kJ.mol–1
Wilson & GoetaAngew Chemie, 2004, 43, 2095
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Computing the Asymmetry in H-transfer tautomerisation
Benzoic AcidComputed asymmetry = 0.46 kJ.mol-1cf NMR 0.4-0.65; neutron diffraction 0.50 kJ.mol-1
-4893.05
-4893.04
-4893.03
-4893.02
-4893.01
-4893.00
2.49 2.51 2.53 2.55 2.57 2.59 2.61
d(O-H...O) (A)
TE/c
ell (
eV)
Energies of low and high E tautomers
Middlemiss et al, CrystEngComm, 2007, 9, 777
Can solid state, periodic computation do the same?
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A second example of promising agreement
Middlemiss et al, CrystEngComm, 2007, 9, 777
-0.050-0.045-0.040-0.035-0.030-0.025-0.020-0.015-0.010-0.0050.000
2.50 2.52 2.54 2.56 2.58 2.60
d(O-H...O) (A)
TE/c
ell (
eV)
p-chloro-benzoic acidComputed asymmetry = 1.15 kJ.mol-1cf NMR 1.5; neutron diffraction 1.60 kJ.mol-1
0.000
0.002
0.004
0.006
0.008
0.010
0.012
0 2 4 6 8 10
Torsion Angle
ΔE
(eV/
mol
ecul
e)
Iso MolCrystal Torsion
angle also
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Co-operative hydrogen bonding?
Relative Energies of tautomeric forms
Form I0 kJ.mol–1
Form II~+50 kJ.mol–1
Form III+8.6 kJ.mol–1
Parkin et al, Acta Cryst, 2007, B63, 303
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Screening for subtle proton behaviour – VT neutron
Potential tautomerism / cooperative hydrogen bonding in dihydroxybenzoic acids
Adam et al, New J Chem, in press
Neutron diffraction supports the computational
conclusion that only one tautomer should be
expected in these T ranges
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Neutron and Theoretical Deformation
Adam et al, New J Chem, in press
H
H
H
H
C
C
C
C C
C
O O
O
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An energy scale for polymorphism
Schmidtmann et al, CrystEngComm, 2007, 9, 743& J Phys Chem A, in press
CRYSTAL03B3PW91, 6-31G**Energy difference, Form I favoured over form II by 3.41 kJ.mol–1
Serious ambiguity in “good” SX X-ray
“cis”
“trans”
Polymorphism in molecular complexes of isonicotinamide and oxalic acid
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Conclusions – Next Steps
• Modern computational methods can underpin our careful multi-condition X-ray, neutron, etc experiments
• Interrogating both experiment and calculations allows questions not accessible by each alone to be asked
So… it’s all solved - No• Still must benchmark any models through reproducing
experimental findings• Still “semi-empirical” choice of theoretical method,
functional, etc• Some answers still “wrong”, some models
inconsistent between good theoretical methods• Eventual aim – towards prediction of property in the
molecular solid-state from structure – proton transfer, conduction, optical activity, colour, etc.
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The Team
The Glasgow GroupMartin Adam, Suzanne Harte, Lorreta Lawton, Alan Martin, Craig Martin, Derek Middlemiss, Andy O’Neill, Andy Parkin, Marc Schmidtmann, Lynne Thomas, Craig Wales and the rest!
Visiting students (school, undergraduate)Adam Jibson, Jennifer Kennedy, Bobby McTaggart, Caitlin Newlands
And many othersColleagues in Glasgow, U. Western Australia, Natural History Museum, CCDC, CPOSS, Edinburgh, Bradford, Durham, TU Munich, Wroclaw, Warsaw, etc
FundingEPSRC, CCLRC-STFC, CMSD, Nuffield Foundation, Oxford Cryosystems, Rigaku, University of Glasgow
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Ferromagnetism and spin transitions in Prussian Blue
Middlemiss & Wilson, Phys Rev B, 2008, 77, 155129
Previous ferromagnetic coupling model based on J2, ignores J1
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Calculation of spin densities
CRYSTAL03Hybrid functionals
Varying HF content – vary F0 from 30 to 100%
Middlemiss & Wilson, Phys Rev B, 2008, 77, 155129
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Critical Temperatures and Coupling Constants
Middlemiss & Wilson, Phys Rev B, 2008, 77, 155129
J1, more significant contribution to FM coupling than J2
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Hydrogen-bonded copper pyrazine coordination polymer
Middlemiss et al, Chem Phys Letters, 2008, 459, 119
[CuII(HF2)(pyz)2]BF4 (pyz = pyrazine)
−1.0 −0.5 0.0 0.5 1.0x (a.u.)
0.000
0.005
0.010
0.015
0.020
E(x
) (a
.u.)
0.0
0.5
1.0
1.5
ψ(x
)
p
d
p
d
−1.0 −0.5 0.0 0.5 1.0x (a.u.)
2.930
2.940
2.950
2.960J py
z/kB(K
)
0.005
0.010
0.015
0.020
0.025
J FH
F/k
B(K
)