d1t1 overview of the theoretical foundations for ecological niche models

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The BAM Diagram: A Useful Heuristic A. Townsend Peterson University of Kansas

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Page 1: D1T1 overview of the theoretical foundations for ecological niche models

The BAM Diagram: A Useful Heuristic

A. Townsend PetersonUniversity of Kansas

Page 2: D1T1 overview of the theoretical foundations for ecological niche models
Page 3: D1T1 overview of the theoretical foundations for ecological niche models

Charles Elton – niche as role in communities

G. Evelyn Hutchinson – multidimensional ecological niches,

bionomic versus scenopoetic variables

Page 4: D1T1 overview of the theoretical foundations for ecological niche models
Page 5: D1T1 overview of the theoretical foundations for ecological niche models
Page 6: D1T1 overview of the theoretical foundations for ecological niche models
Page 7: D1T1 overview of the theoretical foundations for ecological niche models

GEOGRAPHY – THE DISTRIBUTION

Page 8: D1T1 overview of the theoretical foundations for ecological niche models

The Area of Distribution

G Physiological requirements

(Abiotic)

A

Favorable bioticenvironment

(Biotic)B

Accessible to dispersal(Movements)

M

Page 9: D1T1 overview of the theoretical foundations for ecological niche models

The A and B Circles

• Physiological requirements

• Non-reactive variables. Uncoupled

• Roughly independent of the interactions

• Low “resolution”

• Biotic requirements and impacts. Resource consumption, interactions, competitors, predators...

• Variables interactive, dynamically coupled

• High resolution

A B

Page 10: D1T1 overview of the theoretical foundations for ecological niche models

A Useful and Forgotten Distinction of Hutchinson (1978)

• Scenopoetic variables. Non-interacting, slowly changing from a species point of view. Define conditions

• Bionomic variables. Coupled, fast changing. Define regulation

• Hutchinson´s useful distinction was quickly forgotten and then reinvented by Austin, Begon, Jackson & Overpeck, Meszena and others.

Page 11: D1T1 overview of the theoretical foundations for ecological niche models

M = Barriers

Page 12: D1T1 overview of the theoretical foundations for ecological niche models

Abiotic niche

Biotic interactionsAccessibility

Classic BAM Configuration

Page 13: D1T1 overview of the theoretical foundations for ecological niche models

Abiotic niche

Biotic interactionsAccessibility

Biotic interactions

Accessibility

Abiotic nicheHow HutchinsonSaw the World

Page 14: D1T1 overview of the theoretical foundations for ecological niche models

Hutchinson needs to get

out and travel a bit!

Page 15: D1T1 overview of the theoretical foundations for ecological niche models
Page 16: D1T1 overview of the theoretical foundations for ecological niche models

Abiotic niche

Biotic interactionsAccessibility

Abiotic niche

Biotic interactions

Accessibility

Wallace’s World

Page 17: D1T1 overview of the theoretical foundations for ecological niche models

Demonstration of M Effects

• Clear demonstration of the importance of dispersal limitation on species’ distributions

• Invasive species – originally confined to a native distributional area

• Some transport (often human-mediated) expands M

• Distribution expands accordingly

Page 18: D1T1 overview of the theoretical foundations for ecological niche models

Abiotic niche

Biotic interactionsAccessibility

Area presenting appropriate combinations of abiotic and biotic conditions (= potential distribution)

Actual geographic distribution(abiotic and biotic conditions fulfilled,accessible to dispersers)

Page 19: D1T1 overview of the theoretical foundations for ecological niche models
Page 20: D1T1 overview of the theoretical foundations for ecological niche models

Aedes albopictus

• Known as the “Asian Tiger Mosquito”

• Invader; fastest spreading mosquito in the world

• Aggressive daytime biter and pest

• Known to transmit Dengue, La Crosse, St. Louis, Eastern Equine, Ross River, Rift Valley, and West Nile Viruses

Page 21: D1T1 overview of the theoretical foundations for ecological niche models

Aedes albopictus

Present predicted distribution, native range in Asia

Page 22: D1T1 overview of the theoretical foundations for ecological niche models

Aedes albopictus:USA invasion

Projected Asian niche into USA present to create invasion risk-map. How well did GARP perform...

Page 23: D1T1 overview of the theoretical foundations for ecological niche models

Aedes albopictus: USA invasion

Page 24: D1T1 overview of the theoretical foundations for ecological niche models

Aedes albopictus: world risk-map

Page 25: D1T1 overview of the theoretical foundations for ecological niche models
Page 26: D1T1 overview of the theoretical foundations for ecological niche models

Abiotic niche

Biotic interactionsAccessibility

BAM and Eltonian Noise

Abiotic niche

Biotic interactions

Accessibility

Page 27: D1T1 overview of the theoretical foundations for ecological niche models
Page 28: D1T1 overview of the theoretical foundations for ecological niche models

ENVIRONMENT

Page 29: D1T1 overview of the theoretical foundations for ecological niche models

Five Goals of Niche Modeling?

1. ESTIMATE THE FUNDAMENTAL NICHE2. ESTIMATE THE FUNDAMENTAL NICHE3. ESTIMATE THE FUNDAMENTAL NICHE4. ESTIMATE THE FUNDAMENTAL NICHE5. ESTIMATE THE FUNDAMENTAL NICHE

Page 30: D1T1 overview of the theoretical foundations for ecological niche models

How Would the Fundamental Niche Look?

• In any one dimension, expected to be unimodal

• In multiple dimensions, expected to be convex• So, simple models are probably better• Need to take sampling and incomplete

representation into account carefully

Page 31: D1T1 overview of the theoretical foundations for ecological niche models

http://d1vn86fw4xmcz1.cloudfront.net/content/royptb/367/1596/1665/F1.large.jpg

Page 32: D1T1 overview of the theoretical foundations for ecological niche models
Page 33: D1T1 overview of the theoretical foundations for ecological niche models
Page 34: D1T1 overview of the theoretical foundations for ecological niche models

The Area of Distribution

G Physiological requirements

(Abiotic)

A

Favorable bioticenvironment

(Biotic)B

Accessible to dispersal(Movements)

M

Page 35: D1T1 overview of the theoretical foundations for ecological niche models
Page 36: D1T1 overview of the theoretical foundations for ecological niche models

Fundamental niche

Existing fundamental

niche

Realized ecological

niche

Page 37: D1T1 overview of the theoretical foundations for ecological niche models
Page 38: D1T1 overview of the theoretical foundations for ecological niche models

Can EVOLVE Will change with any

range difference

Page 39: D1T1 overview of the theoretical foundations for ecological niche models

?

?

Page 40: D1T1 overview of the theoretical foundations for ecological niche models
Page 41: D1T1 overview of the theoretical foundations for ecological niche models

SUMMARY

Page 42: D1T1 overview of the theoretical foundations for ecological niche models
Page 43: D1T1 overview of the theoretical foundations for ecological niche models

Assess levels of spatial autocorrelation in environmental data, adjust input point data accordingly

Estimate ecological niche (various algorithms)

Evaluation reality of model transfer results, when possible

Transfer to other situations—time and space

Project niche model to geographic space

Model calibration, adjusting parameters to maximize quality

Collate primary biodiversity data documenting occurrences

Process environmental layers to be maximally relevant to distributional ecology of species in question

Collate GIS database of relevant environmental data layers

Assess BAM scenario for species in question; avoid M-limited situations

Saupe et al. 2012. Variation in niche and distribution model performance: The need for a priori assessment of key causal factors. Ecological Modelling, 237–238, 11-22.

Estimate M as area of analysis in study

Barve et al. 2011. The crucial role of the accessible area in ecological niche modeling and species distribution modeling. Ecological Modelling, 222, 1810-1819.

Assess extrapolation (MESS and MOP)

KU Ecological Niche Modeling Group. 2013. Constraints on interpretation of ecological niche models by limited environmental ranges on calibration areas. In preparation.

Model evaluationPeterson et al. 2008. Rethinking receiver operating characteristic analysis applications in ecological niche modelling. Ecological Modelling, 213, 63-72.

Model thresholdingPeterson et al. 2007. Transferability and model evaluation in ecological niche modeling: A comparison of GARP and Maxent. Ecography, 30, 550-560.

Assess spatial precision of occurrence data, adjust inclusion of data (obs and env) accordingly

General Methodological Summary: Peterson et al. (2011) Ecological Niches and Geographic Distributions, Princeton University Press, Princeton.

Refine estimate of current distribution via land use, etc.

Reduce dimensionality

Compare present and future to assess effects of change