agricultural and environmental microbiology department of microbiology, nutrition and dietetics...
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AGRICULTURAL AND ENVIRONMENTAL MICROBIOLOGYDepartment of Microbiology, Nutrition and Dietetics
• Course syllabus – laboratory exercises• Lecturer: Prof. Vojtěch Rada• Office No.: 221• [email protected]
Course syllabus – laboratory exercises
• Microscopy of bacteria: Negative staining, simple staining
• Microscopy of bacteria: Gram staining• Yeast study: Methylene blue staining• Mould study: Zygomycetes (Mucor, Rhizopus),
Ascomycetes (Eupenicillium) and Deuteromycetes (Penicillium, Aspergillus. Asexual reproduction (conidiospores and sporangiospores)
• Actinomycetes and antibiotics
Course syllabus – laboratory exercises
• Identification of bacteria (staphylococci)• Microbiology of drinking water• Microbiology of milk: fermented milk
products, starter cultures.• Carbon cycle: amylolytic bacteria• Nitrogen cycle: Nitrogen fixing bacteria
(Azotobacter, Rhizobium)
LABORATORY SAFETY
• Do not drink, eat and smoke • Protective clothing• Aseptic technique• Bacteriological loop, needle• Bunsen burner• Bacteriological stains
Brightfield microscopy
• low-power objectives (4-20x) • high-dry objectives (40-60x)• immersion objectives (90-100x)• Resolution limit (0.4 μm) • Magnification (1500x)• Oil immersion technique.
PROTOZA 100 μm
MOULDS AND YEASTS 5 – 10 μm
BACTERIA - COCCI 1 μm
- RODS 1 x 2 – 4 μm
VIRUSES 0,1 μm
Methylene blue staining
• This method distinguish live (colourless) and dead (coloured) cell.
• Saccharomyces cerevisiae – yeast; baker, beer production
Methylene blue staining
• A drop of water is placed in the centre of a slide.
• Two loopful of yeast are transferred to slide• One loopful of methylene blue is added• Examine with dry objectives
YEASTS
budding
Bacteria
COCCICOCCI
staphylococci
diplococci
streptococci
pediococci, tetrades
sarcina
Axis of division
diplococci
staphylococci
sarcinas
tetrades
streptokoky
RODS regular - nonsporing
RODS- regular endospore-forming
Clostridium
Bacillus
plektridium
RODS - curved
spirilla
spirochaeta
vibrio
VIBRIO
SPIROCHAETA
RODS- irregular
mycobacteria
bifidobacteria
Actinomycetes
Negative Staining
• (Background staining)• This method consist of mixing the
microorganisms in a small amount of nigrosine and spreading the mixture over the surface of a slide.
Negative Staining
• Drops of water and nigrosine are placed in the centre of a microscopic slide.
• Remove a small amount of material from between your teeth with a sterile straight toohpick.
• Spread the mixture of water, nigrosine and sample over the slide.
• Allow the slide to air-dry and examine with an oil immersion objective