a systematic analysis of the association studies between
TRANSCRIPT
©IndianAcademyofSciences
RESEARCH ARTICLE
A systematic analysis of the association studies between CASP8 D302Hpolymorphisms and breast cancer risk
YINLIANG ZHANG1, WEI LI1,2, YI HONG1,2, GUOYING WU1,2, KAN HE1,2∗ and DAHAI LIU1,2∗
1School of Life Sciences, Anhui University, Hefei City, Anhui 230601, People’s Republic of China2Center for Stem Cell and Translational Medicine, Anhui University, Hefei City, Anhui 230601, People’s Republic of
China
Abstract
Caspase 8 (CASP8) is a regulator of apoptosis, whose genetic variation has been reported to be associated with the riskof various cancers. Especially, the single-nucleotide polymorphism (SNP) rs1045485, which generates the substitutionD302H in CASP8, is likely to be associated with breast cancer. Several previous studies have reported the associationof CASP8 D302H polymorphism with breast cancer; however, the results are inconsistent. To validate the associationbetween CASP8 D302H polymorphism and breast cancer risk, we performed an updated meta-analysis of 18 studiesincluding 27,807 cases and 32,332 controls. We tested the overall association between this SNP and breast cancersusceptibility and stratified subgroups based on countries where cases are from. We confirmed a significant correlationbetween CASP8 D302H polymorphism and the reduced breast cancer susceptibility in population from UK, Germanyand Poland, but no significant association was observed in other countries, such as Finland or USA. Our findingsindicate the relationship of SNP CASP8 D302H and breast cancer would not be universal but only be sensitive in someparticular European countries. The genetic difference for diverse countries may be useful in individual and precisionmedicine or health.
[He K., Li W., Zhang Y., Hong Y., Wu G. and Liu D. 2017 A systematic analysis of the association studies between CASP8 D302Hpolymorphisms and breast cancer risk. J. Genet. 96, 283–289]
Introduction
CASP8 encodes a member of the cysteine–aspartic acidprotease (caspase) family, which is a cysteine peptidasethat can activate various cellular proteases or proteinsleading to apoptosis through the Fas cell surface deathreceptor (FAS)/FAS ligand (FASLG)-mediated apopto-sis pathway. CASP8 is located on chromosome 2q33-34,harbouring 10 exons that span ∼30 kb, in which therewere at least 168 single-nucleotide polymorphisms (SNPs),mostly rare or noncoding. Several studies have evalu-ated the associations between some of these CASP8 SNPsand risk of various cancers (Pittman et al. 2008; Ramuset al. 2008; Couch et al. 2009; Lubahn et al. 2010). Twofunctional SNPs, rs3834129 named as six-nucleotide inser-tion/deletion (−652 6N ins/del) in the promoter regionand rs1045485 named as D302H in the coding region of
*For correspondence. E-mail: Kan He, [email protected];Dahai Liu, [email protected] Zhang and Wei Li contributed equally to this work.
Keywords. breast cancer; caspase 8; rs1045485 polymorphism; meta-analysis.
CASP8, are both thought to be important in cancer aeti-ology. The SNP rs3834129 is considered to be associatedwith susceptibility to multiple cancers, while the effect ofSNP rs1045485 is mainly associated with the risk of breastcancer (Sun et al. 2007).
Previous studies on the association between rs1045485polymorphism and breast cancer indicate an inconsistentresult. Several studies observed a significant association(MacPherson et al. 2004a; Cox et al. 2007; Long et al.2013), while some other studies showed no associationor even no polymorphism (Guan et al. 2014; Michailidouet al. 2015). Recent meta-analysis study pooled the resultfrom four case–control studies, including 18,791 breastcancer cases and 20,318 controls of Caucasians (Sergen-tanis and Economopoulos 2010). Another meta-analysisstudy including cases of various cancer diseases showedthat rs1045485 was found to be only associated with breast
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Yinliang Zhang et al.
cancer risk (Ji et al. 2014). Thus, we conducted an updatedmeta-analysis by adding the latest data, avoiding sam-ple overlapping and stratifying subgroups with the aimof gaining a more reliable evaluation of the associationbetween rs1045485 polymorphism and breast cancer sus-ceptibility. Here, we performed a large-scale meta-analysisincluding 60,139 individuals (27,807 cases and 32,332 con-trols) fromEuropean countries,USAandAustralia, aimedto find the exact relationship between SNP rs1045485 andbreast cancer risk across different countries.
Materials and methods
Eligibility of relevant studies
All original articles published inEnglish that examined theassociation of the rs1045485 polymorphism with breastcancer (published before June 2015) were considered forour meta-analysis. The PubMed and Web of Science weresearched to identify appropriate studies. The followingcombinations of terms were used in our database searches:(‘breast cancer’) and (‘rs1045485’ or ‘CASP8 D302H’).Further, the searches were supplemented by referencescited in other papers. The flowchart of our analysis isshown in figure 1.
To include relevant studies in this meta-analysis, thefollowing criteria were used: (i) studies assessed link-age of rs1045485 polymorphism with breast cancer risk;(ii) female breast cancer patients / breast cancer casesshould be diagnosed explicitly; (iii) controls should beunrelated cancer-free individuals / case–control design;and (iv) reported in English. When multiple reports hadoverlapping sample populations, only the study withlargest sample size was retained.
Figure 1. The flowchart of our analysis.
The studies were excluded if: (i) data were reused onthe same polymorphism; (ii) control genotype distribu-tions were not in Hardy–Weinberg equilibrium (HWE);and (iii) incomplete reporting of genotype frequencies.
Data extraction
For each eligible study, the following information wasextracted: the first author, year of publication, ethnicityof participants, source of controls, number of genotypedcases/controls, method for quality control of genotypingresult. The data were primarily extracted from tables andsupplemented by significant information presented in textsand/or figures.
Statistical analysis
For each study, the HWEwas assessed in controls. The χ2
goodness of fit is used to test deviation fromHWE. Studieswere considered to deviate from HWE at P < 0.05 (GuoandThompson 1992). The inconsistency index, I 2 was cal-culated to evaluate the variation among studies owing toheterogeneity (0–25%, no heterogeneity; 25–50%, moder-ate heterogeneity; 50–75%, large heterogeneity; 75–100%,extreme heterogeneity) (Higgins et al. 2003). The datawerecombined using logistic regression with the fixed-effectspooling model if there was no or moderate heterogeneities(I 2 < 50%). Alternatively, the random effects model wasused (I 2 > 50%). Sensitivity analysis was performed byexcluding one study at a time to determine the corre-sponding magnitude of the weight of each study to thesummary results. The most biologically fit genetic modelwas selected according to the comprehensive effect of thegene using logistic regression. The association betweenrs1045485 polymorphism and breast cancer risk was eval-uated using the odds ratio (OR) and the 95% confidenceinterval (CI). Funnel plots used to observe the publica-tion bias were complemented with Egger’s regression andBegg’s rank correlation test (P > 0.10). The statisticalanalyses were performed using STATA ver. 11.2 (StataCorporation, Texas, USA).
Results and discussion
Study characteristics
Six articles including 22 studies were identified to meet theinclusion criteria, and the details are provided in table 1.We thoroughly reviewed these articles to detect overlap-ping samples. Shephard et al. (2009) used a staged-studydesign from three datasets from UK, Germany and Utah.Study of German dataset by Shephard et al. (2009) andFrank et al. (2005) consisted the same breast cancer casesand controls of German patients. Hence, we included onlythe study by Shephard et al. (2009) and Cox et al. (2007),which included data from 14 studies. Study of UK datasetby Shephard et al. (2009), study of Sheffield dataset byCox
284 Journal of Genetics, Vol. 96, No. 2, June 2017
A systematic analysis
Table
1.Cha
racteristics
ofstud
iesinclud
edin
thismeta-an
alysis.
Case
Con
trol
MAF
HWEPvalue
Reference
Region
Stud
yGG
CG
CC
GG
CG
CC
Case(%
)Con
trol
(%)
Cam
paet
al.(2011)
Europ
ean
dUSA
BPC3
6414
1539
110
8834
2345
197
21.8
24.1
0.004
Shepha
rdet
al.(2009)
UK
SBCS
896
292
17839
314
2727.1
31.2
0.708
German
yGC-H
BOC
275
764
815
260
2323.7
27.9
0.672
USA
UBCS
557
130
15338
7410
22.8
22.3
0.019
Sigu
rdsonet
al.(2007)
USA
RT
660
185
7802
232
2223.4
26.1
0.283
Cox
etal.(2007)
Australia
ABCFS/kC
onFaB
1117
307
2243
314
28
24.3
27.1
0.339
UK
BBC
440
135
843
514
215
25.9
29.1
0.407
German
yGENIC
A466
122
11464
137
1524.0
27.1
0.206
German
yHBCS
771
205
15745
246
1523.7
27.4
0.295
Finland
Helsink
i68
013
58
712
160
518
.319
.40.212
UK
ICR_F
BCS
772
238
1210
8235
231
25.6
28.3
0.706
Finland
Kuo
pio
374
703
349
800
17.0
18.6
0.033
USA
MayoClin
ic600
176
14603
201
2425.8
30.1
0.151
Poland
Poland
1590
430
251714
555
4523.5
27.9
0.993
UK
SEARCH
3117
827
663330
949
8123.9
25.5
0.164
UK
Sheffield
∗672
212
14675
265
2426.7
32.5
0.739
Sweden
SASB
AC
1164
328
201139
310
3724.3
25.8
0.005
Spain
CNIO
403
9714
417
137
824
.327
.20.387
USA
USR
T∗
578
158
7783
224
2023.1
25.7
0.398
Frank
etal.(2005)
German
yFrank
’s∗275
764
815
260
2323.7
27.9
0.672
MacPherson
etal.(2004b)
UK
Sheffield
∗718
221
15675
265
2426.3
32.5
0.739
UK
EastAng
lia14
6835
822
1591
450
4121
.825
.60.168
∗ Excludedfrom
meta-an
alysisforlargeov
erlapp
ingwithotherstud
y.
Journal of Genetics, Vol. 96, No. 2, June 2017 285
Yinliang Zhang et al.
et al. (2007) and MacPherson et al. (2004a) were found toshare common sample sources of north-European originand resident in the Sheffield area. Therefore, only the studybyShephard et al. (2009), which had the largest sample sizeand latest data was used in our meta-analysis. Studies bySigurdson et al. (2007) and Cox et al. (2007) were found toshare common sample sources of US radiologic technol-ogists, and the study by Sigurdson et al. (2007) was usedin our meta-analysis because of the slightly larger sam-ple size. Finally, 18 studies including 27,807 breast cancercases and 32,332 controls were used in our meta-analysis.We checkedHWEof each studyanddivided them into sub-groups based on the controls that are deviated fromHWE.
Heterogeneity and model
All heterogeneity statistic I 2 values were found to be<25% in the present study, which indicated that theappropriate pooling model should have fixed effects. Fur-ther, using a suitable underlying genetic model in geneticassociation studies is crucial for combining data bio-logically rather than statistically. Previous studies listedthe association under different genetic models, but with-out a best fit model, here we carefully selected themost likely genetic model for representing the associ-ation between CASP8 D302H and breast cancer. The
estimated OR(CC vs GG), OR(CG vs GG) and OR(CC vs CG)
values were 0.73 (95% CI: 0.64–0.83), 0.90 (95% CI: 0.86–0.94) and0.81 (95%CI: 0.71–0.93), respectively.Accordingto the methodology for genetic model selection developedby Thakkinstian et al. (2005), the genetic model was mostlikely to be codominant. After the sensitivity analysis, noindividual study was found to affect the overall resultsrobustly, which implied the magnitude of the summaryevaluation.
Gene effect
Theoverall results of the genetic analysis indicated a signif-icant association between CASP8 D302H and a reducedbreast cancer risk (OR = 0.89, 95% CI: 0.86–0.92) (fig-ures 2 and 3).
To test whether the studies whose controls were not inHWEaffect thepooling result,we stratified two subgroups.Significant association between breast cancer risk andCASP8 D302H are shown in both the subgroups whoseHWE P values were >0.05 (OR = 0.87, 95% CI: 0.84–0.91) and<0.05 (OR = 0.91, 95%CI: 0.86–0.96) (figure 2),indicating that if the studies are in HWE, those could beneglected in this study. To gather asmuch data aswe could,we included the studies no matter if its controls were inHWE.
Figure 2. Stratified analysis based on HWE for the association between rs1045485 polymorphism and breast cancer risk using acodominant genetic model.
286 Journal of Genetics, Vol. 96, No. 2, June 2017
A systematic analysis
Figure 3. Stratified analysis based on the country of sources for the association between rs1045485 polymorphism and breast cancerrisk using a codominant genetic model.
We then performed the stratified analysis according tothe cases from different countries. Significant associationwas observed in the studies of UK (OR = 0.89, 95%CI: 0.84–0.95), Germany (OR = 0.85, 95% CI: 0.75–0.97) and Poland (OR = 0.82, 95%CI: 0.72–0.93). Campaet al. (2011) performed amultiethnicity case–control studywithin the National Cancer Institute’s Breast and ProstateCancer Cohort Consortium (BPC3), including Euro-peandescent, Latino,African-American,Asian-American
(mostly of Japanese origin) and Native Hawaiian. There-fore, we identified it as multiethnicity, not included inUSA or any European countries. Result shows significantassociation in this study. However, in Australia, Finland,Spain, Sweden andUSA, there is no significant associationbetween CASP8 D302H and breast cancer risk (figure 3).No heterogeneity was found between groups or betweenstudies. Hence, the association between CASP8 D302Hand breast cancer risk may be country-variable.
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Previously, Sergentanis and Economopoulos (2010)investigated four studies of association between CASP8D302H and breast cancer risk, the summary of each studywas pooled into ameta-analysis by using dominantmodel,but without distinguishing the countries where cases werefrom.Overall result indicates that theCASP8D302Hpoly-morphism may be associated with reduced breast cancerrisk in Caucasian population (OR = 0.87, 95% CI: 0.83–0.92). A case–control study in Han Chinese populationfound no polymorphism of CASP8 D302H (Guan et al.2014). A recent study in African-American populationshowed that CASP8 D302H were deviated from Hardy–Weinberg test and had a Minor Allele Frequency (MAF)< 5% in African-ancestry populations and it was notreplicated in all the previous studies of African-ancestrypopulations (Long et al. 2013). Therefore, the associationbetween CASP8 D302H and breast cancer risk may onlyoccur in some specific countries.While meta-analysis shed light on the trend of associ-
ation between SNP and disease risk, gene–environmentinteractions have the potential to reveal the biological pro-cesses leading to disease, identify the most relevant riskfactors, and improve the accuracy of epidemiological riskmodels. Travis et al. (2010) tested gene–environment inter-actions in a large prospective UK cohort, studying theeffects of 12 polymorphisms, including CASP8 D302H,in relation to 10 established environmental risk factors(age at menarche, parity, age at first birth, breastfeeding,menopausal status, age at menopause, use of hormonereplacement therapy, body-mass index, height and alco-hol consumption). Results showed that the risks of breastcancer associated with CASP8 D302H do not vary signifi-cantly withmost of the established environmental risk fac-tors, except for alcohol consumption. Replication studiesforCASP8D302Hand alcohol consumption are reported,suggesting CASP8 D302H is a complicated SNP andworth more investigation to explore the plausible biologi-cal mechanisms that can explain this association (Nickelset al. 2013; Fletcher and Dudbridge 2014). Some of theunderlying causes that can partly explain the differencesobserved by country may be as follows: weak association,statistical power issues in some countries, possible differ-ent distribution of breast cancer subtypes in the differentcountries, possible gene–environment interaction, etc.The publication bias was accessed using Begg’s (P =
0.495) and Egger’s (P = 0.517) tests. The funnel plot dis-played a symmetric shape (figure 4), indicating the absenceof a publication bias for both positive and negative ornonsignificant findings from published studies.In conclusion, CASP8 has long been considered as
a breast cancer susceptibility gene, at least 168 SNPshave been reported for CASP8, mostly rare or noncod-ing. Here, we provide a comprehensive meta-analysis onCASP8 D302H polymorphism, also known as rs1045485,including 27,807 cases and 32,332 controls fromEuropeancountries, USA and Australia. An overall trend indicates
Figure 4. Begg’s funnel plot displaying a symmetric shape. Thehorizontal axis represents the standard error of OR value, andthe vertical axis represents the OR value of each study.
a protective effect of the polymorphism. This is in accor-dance with previous ones, which had been performed onsmaller number of studies (Breast Cancer Association2006; Janssens et al. 2009). However, a recentGWAS studydetects no association between rs1045485 and breast can-cer risk in European women (Michailidou et al. 2015). Toaddress this problem, we gathered as many studies as wecould and divided them into subgroups by the countrieswhere cases were from.Stratified analysis implies the protective association
seems to pertain only to a part of Caucasian, who weremainly resident in UK, Germany and Poland. To the peo-ple who are from Finland, Spain, Sweden, Australia andUSA, no significant association is observed. In addition,rs1045485 lacks polymorphism in Chinese and African-American population, suggesting that the associationbetween CASP8 D302H and breast cancer risk may becountry-sensitive, the fact which may be due to the effectof gene–environment interaction (Long et al. 2013; Guanet al. 2014).Since, the early investigations were taken place in
populations of UK or Germany, many follow-up stud-ies focussed on these two countries too. Eventhough,we already excluded some large overlapping studies, themajority source data are still from UK or Germany. Onone hand, the lack of CASP8 D302H polymorphismin ethnicity other than Caucasians should be confirmedby genotyping in other ethnicity. On the other hand, inCaucasians, or in European descent, detailed investiga-tion should be performed to explain why the differencesoccurred in same ethnic group who lived in different coun-tries. The difference in the MAF and different LinkageDisequilibrium (LD) structure in these populations mayalso partly explain the difference between ethnic groupsfor the association between rs1045485 and breast can-cer risk. According to the study of Michailidou et al.(2015), increasing the size of the population can signifi-cantly improve the test results and obtain a deeper andclearer view of the function of CASP8 D302H.
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Acknowledgements
We acknowledge financial support by the ScientificResearch Foundation and Academic and Technology Lead-ers Introduction Project, and 211 Project of Anhui University(10117700023, 02303203-32030081), and The Student ResearchTraining Programme of Anhui University (J18520131), andNat-ural Science Foundation Project of Anhui Province (1508085MH189, 1508085QC63) as well as The Education RevitalizationProject ofAnhui Province: StemCell andTranslationalMedicine(Y05201374).
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Received 6 June 2016, in revised form 22 August 2016; accepted 26 August 2016Unedited version published online: 29 August 2016
Final version published online: 17 June 2017
Corresponding editor: L. S. Shashidhara
Journal of Genetics, Vol. 96, No. 2, June 2017 289