translational microbiology laboratory by j. scott vanepps

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J. Scott VanEpps, MD, PhD

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Page 1: Translational Microbiology Laboratory by J. Scott VanEpps

J. Scott VanEpps, MD, PhD

Page 2: Translational Microbiology Laboratory by J. Scott VanEpps

I have no conflicts of interest to disclose

Page 3: Translational Microbiology Laboratory by J. Scott VanEpps

Half of the 2 million annual healthcare-associated infections in the U.S. can be attributed to indwelling medical devices

Devices implanted by EPs Central lines

Endotracheal tubes

Foley catheters

Despite over a decade of effort, infected devices remain the most common cause of healthcare-associated bloodstream infection

Page 4: Translational Microbiology Laboratory by J. Scott VanEpps
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Protection from host defense

Prevent diffusion of humoral factors

Kills neutrophils

Protection from antibiotics

Restricted diffusion

Reduced metabolic activity

Small molecule degradation

Persister cells

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Antimicrobial zinc oxide nanoparticles

Thermal treatment of biofilms in situ

Nanorod-PCR (NR-PCR) for rapid detection of bacteremia

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Pyramids Spheres Plates

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McGuffie et al., Nanomedicine, 2015

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McGuffie et al., Nanomedicine, 2015

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Sturtevant et al., Shock, 2015

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Richardson et al., ASAIO J, 2015

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Richardson et al., ASAIO J, 2015

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Richardson et al., ASAIO J, 2015

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Richardson et al., ASAIO J, 2015

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Chiroplasmonic Nanorod-PCR (NR-PCR) for rapid determination of bacteremia and antibiotic

resistance in sepsis

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Scenario: Septic patient presents to the Emergency Department Fever, confused, elevated heart rate, decreased blood pressure What is the source? What is the bug? Which antibiotic?

Current goal: Administer broad spectrum antibiotics in the first hour De-escalate to targeted therapy ASAP1

Problem: Blood cultures are the current gold standard Long time to result (24-72hrs)2

Low sensitivity and specificity3

Limited viral and fungal identification3

Result: One-size-fits-all Antibiotic resistance (MRSA, VRE) Opportunistic infection (C. dificile) Life threatening side effects (renal and hepatic failure) Undertreatment of critically ill patients

Page 22: Translational Microbiology Laboratory by J. Scott VanEpps

Blood Sample

Culture (12-24hrs)

Speciation (12-24hrs)

Antibiotic Sensitivity (12-24hrs)

NR-PCR (≈3 hrs)Gram +/-

Organism

Targeted therapy

Blood Sample

Antibiotic resistance genes

Targeted therapy

Time to result = 36-72hrs Time to result ≈3 hrs

Organism

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Best limit of detection: 160zM (10-21)

Best time to result: 2 hrs

What next: Compare to blood culture Evaluate CD wavelength vs

transcript length Develop melt curve equivalent Growth in presence of Abx

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VanEpps Lab: Matt McGuffie Usha Kadiyala Rachael Sturtevant Nina Grossman Carolyn Vitale

Younger Lab: Prannda Sharma Ian Richardson Marika Raff

Solomon Lab: Elizabeth Stewart Maria Tianhui Joanne Beckwith

Michael Heung, MD Kotov Lab:

Jin Hong Joong Hwan Bahng Gleiciani Silveira

Yue Wang Green Lab:

Emmanouil Glynos

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NIH NIGMS MCubed MCIRCC SAEM NSF CVC DOD EMF

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