The Station Biologique de Roscoff. A brief introduction

Ecole de bioinformatique Aviesan,

Roscoff, 14 -18 janvier 2013

UMR 7144

Adaptation et diversité en milieu

marin

F. Lallier(INEE)

USR 3151

Molécules et cibles

thérapeutiques

S. Ruchaud(INSB)

EI 937, FR 2424, OSU Roscoff B. Kloareg

CNRS (INEE, INSB, INSU) and UPMC

UMR 7139

Végétaux marins et

biomolécules

C. Boyen(INSB, INC)

UMR 7150

Mer et Santé

P. Cormier(INSB)

Station biologique de Roscoff (CNRS and Station biologique de Roscoff (CNRS and UPMC): structural organization UPMC): structural organization

Permanent staff = 159, including 41 researchers (CNRS, Inserm, Ifremer) and 22 lecturers and professors (UPMC)

Main missions of SBRMain missions of SBR

Research in marine biology and ecology Teaching, training and outreach Long term monitoring of marine ecosystems Host scientists and students, including for non-resident users Contribute to territorial development

Science, education and innovation keywords: the evolution Science, education and innovation keywords: the evolution of life, marine biodiversity, ecosystems and bio-resourcesof life, marine biodiversity, ecosystems and bio-resources

0 1 500 3 000 4 500 6 000750Meters

1 : 60 000

AstanAstan

EstacadeEstacade

BlosconBloscon

Ar PourvernAr Pourvern

Barre des FlotsBarre des Flots

Pierre NoirePierre Noire

Rivière de Rivière de MorlaixMorlaix

DuonsDuons

land plants

glaucophytes

green algae red algae

Archaeplastida

haptophytes

Alveolates

Chromalveolates

Stramenopiles

fungi

animals

Amoebozoa

Ophistokonts

Excavata

Rhizaria

apicomplexans

dinoflagellates

oomycetes

diatoms

brown algae

Unikonts

cryptophytes

Many major lineages do not have terrestrial Many major lineages do not have terrestrial representativesrepresentatives

They are a major asset for evolutionary biology. They also They are a major asset for evolutionary biology. They also feature unique primary or secundary metabolitesfeature unique primary or secundary metabolites

The omics revolution. Marine biologists and The omics revolution. Marine biologists and ecologists now have access to all of the componants ecologists now have access to all of the componants of life, from genes to metabolites, and bioinformatics of life, from genes to metabolites, and bioinformatics

are geared to analyse this huge input of new data. are geared to analyse this huge input of new data.

c/o P. Potin, SBRoscoff

Contribution of genomics to marine sciencesContribution of genomics to marine sciencesc/o Catherine Boyen, SB Roscoffc/o Catherine Boyen, SB Roscoff

Genomics

Environmental

Structural Functional

Environment and Climate change,

Adaptation

Management of Marine Resources

Gene mining for Health and Biotech

Marine genomics allows to draw global conclusions about our surrounding environment and to take a holistic approach to ocean management

Evolution of life. Structure and functioning

of marine diversity

La Station biologique de Roscoff porte trois La Station biologique de Roscoff porte trois projets du Programme Investissements projets du Programme Investissements d’Avenir : d’Avenir : - Centre National de Ressources Biologiques Centre National de Ressources Biologiques marinesmarines (EMBRC-France) : Infrastructure (EMBRC-France) : Infrastructure Nationale en Biologie-Santé et Nationale en Biologie-Santé et IRIR-TGIR-TGIR- Idéalg : Biotechnologies et Bioressources- Idéalg : Biotechnologies et Bioressources- Océanomics : Biotechnologies et - Océanomics : Biotechnologies et Bioressources. Bioressources.

Elle est aussi associée à GreenStars (IEED) et à l’Institut Elle est aussi associée à GreenStars (IEED) et à l’Institut Français de Bioinformatique (INBS), ainsi qu’aux instruments Français de Bioinformatique (INBS), ainsi qu’aux instruments d’excellence de l’UPMC (SATT LuTech, IdEx Paris Sorbonne d’excellence de l’UPMC (SATT LuTech, IdEx Paris Sorbonne

Universités).Universités).

OO Villefranche/mer Laboratoire Arago Banyuls/mer

Station Biologique de Roscoff

Centre National de Ressources Biologiques Marines Centre National de Ressources Biologiques Marines ((Infrastructure Nationale en Biologie et Santé = EMBRC-FranceInfrastructure Nationale en Biologie et Santé = EMBRC-France) )

Access to this resource requires the culturing or raising of a variety of micro- and macro-organisms. EMBRC - France will give access to as many as 250 macro-organisms, almost covering the whole range of the eukarotic tree of life.

Torpedo marmorata

www.natuurlijkmooi.net

Phallusia mammillata

www.marlin.ac.uk/imgs/o_parliv.jpg

Paracentrotus lividus

Ciona intestinalis

Access to the marine biological resourcesAccess to the marine biological resources

Sepia officinalis

Scyliorhinus canicula

Ectocarpus siliculosus

Chondrus crispus

Tjärno-KristinebergTjärno-Kristineberg

Roscoff Roscoff

BanyulsBanyuls

NaplesNaples FaroFaro

ObanOban

VillefrancheVillefranche

PlymouthPlymouth

HeraklionHeraklion

St AndrewsSt Andrews

BremenBremen

EMBLEMBL

BergenBergen

De plus, implication de la SBR dans De plus, implication de la SBR dans Elixir Elixir et dans et dans EU-OpenscreenEU-Openscreen

EMBRCEMBRC: Marine biological laboratories are now recognized : Marine biological laboratories are now recognized as as strategicstrategic research infrastructures in Europe ( research infrastructures in Europe (ESFRIESFRI) )

Une formation de haut niveau pour répondre aux défis de la recherche et de l’innovation en biologie et écologie.

Licence Biologie-Mathématiquesen partenariat avec Agrocampus Ouest 1600 heures d’enseignement, 1300h SBR + 300 heures Agrocampus OuestPromotions 2011-2012 = 24 étudiants (L2, 15 étudiants, L2, 10 étudiants) à terme, promotions de 20 étudiants chacune Coordination : L1 Pascal Riera, L2 Arnaud Tanguy, L3 Patrick Cormier et J.Y. Toullec