the biosharing portal - linking databases, data standards and policies in the life, biomedical and...

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Peter McQuilton @drosophilic/@biosharing The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences RDA 9 th Plenary, IGAD meeting, 5-7 April 2017, Barcelona, Spain

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Page 1: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Peter McQuilton@drosophilic/@biosharing

The BioSharing portal - linking databases, data standards and

policies in the life, biomedical and environmental sciences

RDA 9th Plenary, IGAD meeting, 5-7 April 2017, Barcelona, Spain

Page 2: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

• A web-based, curated and searchable portal that monitors the

development and evolution of standards, their use in

databases and the adoption of both in data policies,

to inform and educate

Page 3: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Complex and evolving landscape

Data policies by funders, journals and other organizations

Databases, tools and services

Content standards

Formats Terminologies Guidelines

Models/Formats = Conceptual

model, conceptual schema,

exchange formats

Terminologies = Controlled

vocabularies, taxonomies,

thesauri, ontologies etc.

Guidelines = Minimum information

reporting requirements, checklists

Page 4: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Content standards

Data policies by funders, journals and other organizations

Databases, tools and services

Formats Terminologies Guidelines

By grass-rootsgroups, e.g.:

By standard organizations, e.g.:

Complex and evolving landscape

Page 5: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Helping users make

the right decision

My funder’s data policy recommends the use of established standards, but which are widely endorsed and applicable to my crop data?

We need a standard for sharing farm data, what’s out there and who should we talk to?

I have some old rice genomic data in format X, which is now deprecated; what format has replaced X?

What databases are heavily supported in the community that we should recommend to our authors?

Page 6: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences
Page 7: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences
Page 8: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences
Page 9: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Indicators to describe the status of standards and databases

Ready for use, implementation, or recommendation

In development

Status uncertain

Deprecated as subsumed or superseded

Manually curated and verified by the community behind each

resource

Page 10: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences
Page 11: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Track evolution

Page 12: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Track evolution

Page 13: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Data PolicyList of their

recommended databases and standards

Visualizing the relationships between data…

Page 14: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Data Policy

…to inform and educate on existing and new resources

Page 15: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Standard developing groups, incl.:Journals/publishers, incl.:

BioTools

Cross-links and data exchange, incl.:

Societies and organisations, incl.: Institutional RDM services, incl.:

Projects/programmes, incl.:

Working with the community/adopters

WG output available now

Page 16: The BioSharing portal - linking databases, data standards and policies in the life, biomedical and environmental sciences

Acknowledgements