the a4a initiative - what if stock assessment is as simple as a linear model ?

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    The a4a InitiativeWhat if stock assessment is as simple

    as a linear model ?

    Ernesto Jardim*Colin Millar

    Iago MosqueiraChato Osio

    Finlay Scott

    JRCUnit of Maritime Affairs

    Fishreg* [email protected]

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    What if ...

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    We could assess allstocks in a sea basin !?

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    Think about stockassessment as the

    starting point !

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    Ok, but

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    How do we do it ?

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    A bit of reality

    Europe spends 50-70 million euros

    per year collecting data for stockassessment.

    In Europe 300+ stocks are sampledfor biological information.

    ICES and GFCM assess ~ 100

    stocks.

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    a4a initiative

    (a) develop an assessment method

    targeting stocks that have a reduced knowledgebase on biology and moderate time series onexploitation and abundance;

    (b) trigger the discussion about the problemof massive stock assessment.

    (c) capacity building

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    a4a stock assessmentframework

    A SCA model implemented inR/FLR(*)/ADMB that can be applied

    rapidly to a wide range of situationswith low parametrizationrequirements.

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    (*) http://flr-project.org

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    a4a Init

    a4a stock assessment framework

    [C]

    [I]

    [S/R]

    f model

    q model

    r model

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    Use R's capabilities to set modelsbased on equations.

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    a4a(fmodel= ~ year,qmodel= list( ~ age),

    srmodel = ~ factor(year),

    stock, indices)

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    Log f ~ factor(age) + factor(year)

    Log f ~ s(age, k=4) + s(year, k=10)

    Log q ~ s(age, k=4) + year

    Log f ~ te(age, year, k=c(4, 10))

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    Examples

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    But we want more

    We want to make it

    intuitive !!!

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    Methods should be implemented in away that it doesn't require a highly

    specialized statistician to use them.

    Parametrization must have abiological meaning (when possible).

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    ~ factor(age) + factor(year)

    ~ separable()

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    a4a Init

    ~ s(age, k=4) + year

    ~ trawl(catchability=linear)

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    a4a Init

    Testing, 1,2

    WKLIFE stocks

    Fishbase stocks(*)

    (*) https://fishreg.jrc.ec.europa.eu/web/a4a/simulation-testing

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    a4a Init

    Testing, 1,2 ...

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    Wrapping up

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    The framework is opensource andfree to promote transparency,transferability.

    It uses R to take advantage of R's

    capabilities.It uses ADMB to take advantage ofthe statistical sophistication of AD.

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    Wrapping up

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    The a4a stock assessment model

    provides a flexible framework forstock assessment that can be appliedrapidly to a large number (all ?)

    stocks in a sea basin.

    (*) web