the a4a initiative - what if stock assessment is as simple as a linear model ?
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The a4a InitiativeWhat if stock assessment is as simple
as a linear model ?
Ernesto Jardim*Colin Millar
Iago MosqueiraChato Osio
Finlay Scott
JRCUnit of Maritime Affairs
Fishreg* [email protected]
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What if ...
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We could assess allstocks in a sea basin !?
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Think about stockassessment as the
starting point !
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Ok, but
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How do we do it ?
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A bit of reality
Europe spends 50-70 million euros
per year collecting data for stockassessment.
In Europe 300+ stocks are sampledfor biological information.
ICES and GFCM assess ~ 100
stocks.
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a4a initiative
(a) develop an assessment method
targeting stocks that have a reduced knowledgebase on biology and moderate time series onexploitation and abundance;
(b) trigger the discussion about the problemof massive stock assessment.
(c) capacity building
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a4a stock assessmentframework
A SCA model implemented inR/FLR(*)/ADMB that can be applied
rapidly to a wide range of situationswith low parametrizationrequirements.
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(*) http://flr-project.org
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a4a stock assessment framework
[C]
[I]
[S/R]
f model
q model
r model
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Use R's capabilities to set modelsbased on equations.
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a4a(fmodel= ~ year,qmodel= list( ~ age),
srmodel = ~ factor(year),
stock, indices)
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Log f ~ factor(age) + factor(year)
Log f ~ s(age, k=4) + s(year, k=10)
Log q ~ s(age, k=4) + year
Log f ~ te(age, year, k=c(4, 10))
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Examples
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But we want more
We want to make it
intuitive !!!
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Methods should be implemented in away that it doesn't require a highly
specialized statistician to use them.
Parametrization must have abiological meaning (when possible).
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~ factor(age) + factor(year)
~ separable()
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~ s(age, k=4) + year
~ trawl(catchability=linear)
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Testing, 1,2
WKLIFE stocks
Fishbase stocks(*)
(*) https://fishreg.jrc.ec.europa.eu/web/a4a/simulation-testing
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Testing, 1,2 ...
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Wrapping up
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The framework is opensource andfree to promote transparency,transferability.
It uses R to take advantage of R's
capabilities.It uses ADMB to take advantage ofthe statistical sophistication of AD.
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Wrapping up
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The a4a stock assessment model
provides a flexible framework forstock assessment that can be appliedrapidly to a large number (all ?)
stocks in a sea basin.
(*) web