species list of non-flying mammals in the jamari national forest

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Species list of non-flying mammals in the Jamari National Forest, Rondonia, Brazil April Hampton (SUNY Oswego ) Marcelo Mazzolli (UNIPLAC) Conclusion References Acknowledgements Introduction Methods Results Emmons, L. H., & Feer, F. (1990). Neotropical Rainforest Mammals: A Field Guide (2nd ed.). Chicago, IL: The University of Chicago Press. IUCN 2013. IUCN Red List of Threatened Species. Version 2013.1. <www.iucnredlist.org >. Downloaded on 05 August 2013. Nowak, R. M. (1999). Walker's Mammals of the world (6th ed., Vols. 1 - 2). Baltimore, Maryland: The Johns Hopkins University Press. The purpose of this review was to create a list of non-flying mammals located in the Jamari National Forest in Rondonia, Brazil. Various literature was consulted in order to create this list. Very little research has been conducted in the local area so the forms of literature employed were books and field guides that discussed the many species of mammals in Brazil. The IUCN red list was employed as the main authority in species’ range and nomenclature(IUCN, 2013). In one source, Emmons, L. H., & Feer, F. (1990), maps had to be consulted to determine which species were listed as occurring in the Jamari National Forest. The other source, Nowak, R. M. (1999), was utilized to determine if other nomenclature was used. During the two week expedition, sampling was conducted in a variety of ways. Small groups walked different trails everyday to record tracks, visual sightings, and vocalizations. Track traps were placed every two-hundred meters on all nine trails and at least one camera trap was placed on each main trail and adjacent roads. Non-Flying Mammals within the Jamari National Forest Before conducting research on biological communities, researchers must know what species are expected to inhabit the region. In the process of preparing for Projeto Puma, a list of species found in the Jamari National Forest was compiled; however, this list was not complete as its purpose was to provide a list of species likely to be recorded using the methods that were employed. A complete guide is imperative to researchers who need to readily identify species as they are presented. Therefore, a review of the literature on the species found in the Jamari National Forest combined with the list made prior to the expedition would be of significance to future research conducted in the study area. Discussion Using the species list prepared prior to the expedition, forty-three species were expected to be found in the Jamari National Forest. Since the IUCN study of species distribution and taxonomic naming is constantly updated, this was considered the most vital source. There were two main reasons for the change in nomenclature: purely taxonomic and new findings regarding distribution and correct identification. In total, eight species differed from those provided by the IUCN red list due to purely taxonomic reasons. The first being Pecari Tajacu. In Emmons, L. H., & Feer, F. (1990) , this species was listed as Tayassu tajacu due to the fact that DNA studies suggest that P. Tajacu may consist of two major clades or lineages comprising North/Central and South America with structural chromosomal differences. The second was Puma concolor and Puma yagouaroundi which were referred to as Felis concolor and Felis yagouaroundi, respectively, in several of the resources. Mitochondrial DNA analysis suggests that the puma and the jaguarundi are more closely related to other felines in the genus Puma than the domestic cat, which shared the genus Felis with the two felines. Leopardus pardalis and Leopardus wiedii were referred to as Felis pardalis and Felis wiedii, respecitvely. The genus Leopardus was orginally considered a subgenus of the genus Felis. Genetic studies indicate that Leopardus forms a distinct clade within the subfamily Felinae and within the genus two distinct evolutionary lineages are present. In Emmons, L. H., & Feer, F. (1990), Pithecia irrorata was termed Pithecia monachus irrorata. This is due to the fact that the genus monachus was once considered a subgenus of Pithecia, but is now under revision. In several sources, Cuniculus paca was referred to as Agouti paca. The International Commision on Zoological Nomenclature ruled in 1998 that the appropriate genus name is Cuniculus because Agouti refers to the common name of a species found in the genus Dasyprocta. The IUCN lists the scientific name for capybara as Hydrochoerus hydrochaeris; however, several sources listed it as Hydrochaeris hydrochaeris . The IUCN states that the two genus names are interchangeable, but Hydrochoerus is used more frequently. There was one species whose change in nomenclature stemmed from the fact that its distribution changed. In Emmons, L. H., & Feer, F. (1990), Callithrix argentata (Mico argentatus), was said to be found in the Jamari National Forest; however, according to the IUCN red list, C. argentata is no longer found in the forest: the species’ distribution is further east. Another species, Mico rondoni is now found in the area that C. argentata once inhabited. Since both of these species have distinct silvery fur and posses similar physical characteristics, it is also possible that M. rondoni was mistaken for C. argentata, but further research must be conducted to determine this. Of the forty-three species expected, twenty-three were recorded. The lack of detection of more species does not accurately reflect on the presence of other non-flying mammal species. Using different methods of observation should result in detection of other species. Figures left to right: Preparing track traps, footprint of an ocelot, Rondon’s marmoset, camera trap picture of an ocelot, road near the base camp, and footprint of a puma. Creating a complete species list for a specific study area takes a great deal of time and resources. This task becomes more difficult when very little research has been conducted in the study area. The main reason for the variation in number and name of species in the study area are changes in the range map of certain species, as can be seen when comparing older literature to a database that is constantly updated. Discrepancies arose when attempting to determine the correct taxonomic nomenclature for a given species. When the scientific name of a species is changed, it cannot be updated in a source that has already been published. This leads to problems when trying to identify the species that was recorded. The non-flying mammal species list that resulted from this expedition should be a valuable resource for future research in the Jamari National Forest due to the fact that it is crucial to know the species that inhabit a study area prior to any research or expeditions being conducted. This list does not assure the occurrence of all species, but instead provides a list of the possible species that may be encountered. With further expeditions, aimed to record a broader range of species, the existence of other species on the list can be determined. . Species Common Names Emmons & Feer IUCN Red List Nowak Recorded Reason for name change Artiodactyla Mazama americana Red Brocket Deer X X X X Mazama gouazoubira Gray Brocket Deer X X X X Pecari tajacu Collared peccary Tayassu tajacu X X X Tayassu pecari Whitelipped peccary X X X X Carnivora Atelocynus microtis Shorteared dog X X X Eira barbara Tayra X X X Galictis vittata Grison X X X Leopardus pardalis Ocelot Felis pardalis X Felis paradalis X Leopardus wiedii Margay Felis wiedii X X Lontra longicaudis Brazilian Otter X X X Nasua nasua South American Coati X X X X Panthera onca Jaguar X X X X Potos flavus Kinkajou X X X Procyon cancrivorus Crabeating raccoon X X X Pteronura brasiliensis Giant otter X X X Puma yagouaroundi Jaguarundi Felis yagouaroundi X Felis yagouaroundi Puma concolor Puma Felis concolor X Felis concolor X Speothos venaticus Bush Dog X X X Cingulata Cabassous unicinctus Southern Nakedtailed Armadillo X X X Dasypus kappleri Greater longnosed armadillo X X X Dasypus novemcinctus Ninebanded Longnosed Armadillo X X X X Priodontes maximus Giant armadillo X X X Didelphimorpha Didelphis marsupialis Common opossum X X X Marmosa murina Murine mouse opossum X X X Metachirus nudicaudatus Brown foureyed opossum X X X Philander opossum Common gray foureyed opossum X X X Perissodactyla Tapirus terrestris Brazilian tapir X X X X Pilosa Bradypus variegatus Brownthroated three toed sloth X X X Cyclopes didactylus Silky anteater X X X Myrmecophaga tridactyla Giant anteater X X X X Tamandua tetradactyla Collared or Southern tamandua X X X Primates Aotus nigriceps Blackheaded night monkey X X X Ateles chamek Blackfaced black spider monkey X X X X Callicebus brunneus Brown titi monkey X X X X Cebus albifrons Whitefronted capuchin monkey X X X Cebus apella Guianan/ Margarita Island brown capuchin X X X X Mico rondoni Rondon's Marmoset X X Pithecia irrorata Gray's baldfaced saki Pithecia monachus irrorata X X X Saguinus fuscicollis Saddleback tamarin X X X X Saimiri ustus Bareeared squirrel monkey X X X X Rodentia Coendou prehensilis Brazilian porcupine X X X Cuniculus paca Paca Agouti paca X Agouti paca X Dasyprocta fuliginosa Black agouti X X X Holochilus sciureus Marsh Rat X X X Hydrochoerus hydrochaeris Capybara Hydrochaeris hydrochaeris X Hydrochaeris hydrochaeris Nectomys rattus Small footed bristly mouse X X Oecomys bicolor Bicolored arbooreal rice rat X X X Oligoryzomys microtis Smalleared pygmy rice rat X X X Hylaeamys yunganus Yungas rice rat X X X Oxymycterus amazonicus Longnosed mouse X X X Proechimys steerei Spiny Rats X X X Sciurus spadiceus Southern Amazon red squirrel X X X The genus Leopardus was origninally considered a subgenus of the genus Felis. Genetic studies indicate that Leopardus forms a distinct clade within the subfamily Felinae and within the genus two distinct evolutionary lineages are present. Mitochondrial DNA Analysis suggest that the Puma is more closely related to the yagouaroundi than the domestic cat. So as of 1993 the puma was removed from the genus Felis and placed in the genus Puma. Monachus was originally considered a sub genus of Pithecia, but is currently being revised.. Agouti refers to the common name of a species found in the genus Dasyprocta, so the International Commission on Zoological Nomenclature ruled in 1998 that the appropriate genus name is Cuniculus. The genus Hydrochaeris and Hydrochoerus can be used interchangeably, but Hydrochaeris is used more frequently. This species was placed in genus Dicotyles by some authors, the genus Pecari by Grubb (1993, 20 genus Tayassu by Jones et al. (1992). MtDNA data support the recognition of three genera of ext peccaries: Catagonus, Pecari, and Tayassu, with this species in the genus Pecari (Theimer and Ke Gongora and Moran 2005). DNA studies suggest that P. tajacu may consist of at least two major lineages comprising specimens from North/Central and South America (Gongora et al. 2006, 201 structural chromosomal differences (Gongora et al. 2000, Adega et al. 2006).

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Species list of non-flying mammals in the Jamari National Forest, Rondonia, Brazil

April Hampton (SUNY Oswego) Marcelo Mazzolli (UNIPLAC)

Conclusion References Acknowledgements

Introduction

Methods

Results

Emmons, L. H., & Feer, F. (1990). Neotropical Rainforest Mammals: A Field Guide (2nd ed.). Chicago, IL: The University of Chicago Press.

IUCN 2013. IUCN Red List of Threatened Species. Version 2013.1.

<www.iucnredlist.org>. Downloaded on 05 August 2013. Nowak, R. M. (1999). Walker's Mammals of the world (6th ed., Vols. 1 - 2).

Baltimore, Maryland: The Johns Hopkins University Press.

The purpose of this review was to create a list of non-flying mammals located in the Jamari National Forest in Rondonia, Brazil. Various literature was consulted in order to create this list. Very little research has been conducted in the local area so the forms of literature employed were books and field guides that discussed the many species of mammals in Brazil. The IUCN red list was employed as the main authority in species’ range and nomenclature(IUCN, 2013). In one source, Emmons, L. H., & Feer, F. (1990), maps had to be consulted to determine which species were listed as occurring in the Jamari National Forest. The other source, Nowak, R. M. (1999), was utilized to determine if other nomenclature was used. During the two week expedition, sampling was conducted in a variety of ways. Small groups walked different trails everyday to record tracks, visual sightings, and vocalizations. Track traps were placed every two-hundred meters on all nine trails and at least one camera trap was placed on each main trail and adjacent roads.

Non-Flying Mammals within the Jamari National Forest

Before conducting research on biological communities, researchers must know what species are expected to inhabit the region. In the process of preparing for Projeto Puma, a list of species found in the Jamari National Forest was compiled; however, this list was not complete as its purpose was to provide a list of species likely to be recorded using the methods that were employed. A complete guide is imperative to researchers who need to readily identify species as they are presented. Therefore, a review of the literature on the species found in the Jamari National Forest combined with the list made prior to the expedition would be of significance to future research conducted in the study area.

Discussion Using the species list prepared prior to the expedition, forty-three species were expected to be found in the

Jamari National Forest. Since the IUCN study of species distribution and taxonomic naming is constantly updated, this was considered the most vital source. There were two main reasons for the change in nomenclature: purely taxonomic and new findings regarding distribution and correct identification. In total, eight species differed from those provided by the IUCN red list due to purely taxonomic reasons. The first being Pecari Tajacu. In Emmons, L. H., & Feer, F. (1990) , this species was listed as Tayassu tajacu due to the fact that DNA studies suggest that P. Tajacu may consist of two major clades or lineages comprising North/Central and South America with structural chromosomal differences. The second was Puma concolor and Puma yagouaroundi which were referred to as Felis concolor and Felis yagouaroundi, respectively, in several of the resources. Mitochondrial DNA analysis suggests that the puma and the jaguarundi are more closely related to other felines in the genus Puma than the domestic cat, which shared the genus Felis with the two felines. Leopardus pardalis and Leopardus wiedii were referred to as Felis pardalis and Felis wiedii, respecitvely. The genus Leopardus was orginally considered a subgenus of the genus Felis. Genetic studies indicate that Leopardus forms a distinct clade within the subfamily Felinae and within the genus two distinct evolutionary lineages are present. In Emmons, L. H., & Feer, F. (1990), Pithecia irrorata was termed Pithecia monachus irrorata. This is due to the fact that the genus monachus was once considered a subgenus of Pithecia, but is now under revision. In several sources, Cuniculus paca was referred to as Agouti paca. The International Commision on Zoological Nomenclature ruled in 1998 that the appropriate genus name is Cuniculus because Agouti refers to the common name of a species found in the genus Dasyprocta. The IUCN lists the scientific name for capybara as Hydrochoerus hydrochaeris; however, several sources listed it as Hydrochaeris hydrochaeris . The IUCN states that the two genus names are interchangeable, but Hydrochoerus is used more frequently. There was one species whose change in nomenclature stemmed from the fact that its distribution changed. In Emmons, L. H., & Feer, F. (1990), Callithrix argentata (Mico argentatus), was said to be found in the Jamari National Forest; however, according to the IUCN red list, C. argentata is no longer found in the forest: the species’ distribution is further east. Another species, Mico rondoni is now found in the area that C. argentata once inhabited. Since both of these species have distinct silvery fur and posses similar physical characteristics, it is also possible that M. rondoni was mistaken for C. argentata, but further research must be conducted to determine this.

Of the forty-three species expected, twenty-three were recorded. The lack of detection of more species does not accurately reflect on the presence of other non-flying mammal species. Using different methods of observation should result in detection of other species.

Figures left to right: Preparing track traps, footprint of an ocelot, Rondon’s marmoset, camera trap picture of an ocelot, road near the base camp, and footprint of a puma.

Creating a complete species list for a specific study area takes a great deal of time and resources. This task becomes more difficult when very little research has been conducted in the study area. The main reason for the variation in number and name of species in the study area are changes in the range map of certain species, as can be seen when comparing older literature to a database that is constantly updated.

Discrepancies arose when attempting to determine the correct taxonomic nomenclature for a given species. When the scientific name of a species is changed, it cannot be updated in a source that has already been published. This leads to problems when trying to identify the species that was recorded.

The non-flying mammal species list that resulted from this expedition should be a valuable resource for future research in the Jamari National Forest due to the fact that it is crucial to know the species that inhabit a study area prior to any research or expeditions being conducted. This list does not assure the occurrence of all species, but instead provides a list of the possible species that may be encountered. With further expeditions, aimed to record a broader range of species, the existence of other species on the list can be determined. .

Species Common  Names Emmons  &  Feer IUCN  Red  List Nowak Recorded Reason  for  name  changeArtiodactyla Mazama  americana Red  Brocket  Deer X X X X

Mazama  gouazoubira Gray  Brocket  Deer X X X XPecari  tajacu Collared  peccary Tayassu  tajacu X X XTayassu  pecari White-­‐lipped  peccary X X X X

Carnivora Atelocynus  microtis Short-­‐eared  dog X X X -­‐Eira  barbara Tayra X X X -­‐Galictis  vittata Grison X X X -­‐Leopardus  pardalis Ocelot Felis  pardalis X Felis  paradalis XLeopardus  wiedii Margay Felis  wiedii X X -­‐Lontra  longicaudis Brazilian  Otter X X X -­‐Nasua  nasua South  American  Coati X X X XPanthera  onca Jaguar X X X XPotos  flavus Kinkajou X X X -­‐Procyon  cancrivorus Crab-­‐eating  raccoon X X X -­‐Pteronura  brasiliensis Giant  otter X X X -­‐Puma  yagouaroundi Jaguarundi Felis  yagouaroundi X Felis  yagouaroundi -­‐Puma  concolor Puma Felis  concolor X Felis  concolor XSpeothos  venaticus Bush  Dog X X X -­‐

Cingulata Cabassous  unicinctus Southern  Naked-­‐tailed  Armadillo X X X -­‐Dasypus  kappleri Greater  long-­‐nosed  armadillo X X X -­‐Dasypus  novemcinctus Nine-­‐banded  Long-­‐nosed  Armadillo X X X XPriodontes  maximus Giant  armadillo X X X -­‐

Didelphimorpha Didelphis  marsupialis Common  opossum X X X -­‐Marmosa  murina Murine  mouse  opossum X X X -­‐Metachirus  nudicaudatus Brown  four-­‐eyed  opossum X X X -­‐Philander  opossum Common  gray  four-­‐eyed  opossum X X X -­‐

Perissodactyla Tapirus  terrestris Brazilian  tapir X X X X

Pilosa Bradypus  variegatus Brown-­‐throated  three  toed  sloth X X X -­‐Cyclopes  didactylus Silky  anteater X X X -­‐Myrmecophaga  tridactyla Giant  anteater X X X XTamandua  tetradactyla Collared  or  Southern  tamandua X X X -­‐

Primates Aotus  nigriceps Black-­‐headed  night  monkey X X X -­‐Ateles  chamek Black-­‐faced  black  spider  monkey X X X XCallicebus  brunneus Brown  titi  monkey X X X XCebus  albifrons White-­‐fronted  capuchin  monkey X X X -­‐Cebus  apella Guianan/  Margarita  Island  brown  capuchin X X X XMico  rondoni Rondon's  Marmoset -­‐ X -­‐ XPithecia  irrorata Gray's  bald-­‐faced  saki Pithecia  monachus  irrorata X X XSaguinus  fuscicollis Saddleback  tamarin X X X XSaimiri  ustus Bare-­‐eared  squirrel  monkey X X X X

Rodentia Coendou  prehensilis Brazilian  porcupine X X X -­‐Cuniculus  paca Paca Agouti  paca X Agouti  paca XDasyprocta  fuliginosa Black  agouti -­‐ X X XHolochilus  sciureus Marsh  Rat X X X -­‐Hydrochoerus  hydrochaeris Capybara Hydrochaeris  hydrochaeris X Hydrochaeris  hydrochaeris -­‐Nectomys  rattus Small  footed  bristly  mouse X -­‐ X -­‐Oecomys  bicolor Bicolored  arbooreal  rice  rat X X X -­‐Oligoryzomys  microtis Small-­‐eared  pygmy  rice  rat X X X -­‐Hylaeamys  yunganus Yungas  rice  rat X X X -­‐Oxymycterus  amazonicus Long-­‐nosed  mouse X X X -­‐Proechimys  steerei Spiny  Rats X X X -­‐Sciurus  spadiceus Southern  Amazon  red  squirrel X X X -­‐

The genus  Leoparduswas  origninally  considered  a  subgenus  of  the  genus  Felis.  Genetic  studies  indicate  that  Leopardus forms  a  distinct  clade  within  the  subfamily  Felinae and  within  the  genus  two  distinct  evolutionary  lineages  are  present.  

Mitochondrial  DNA  Analysis  suggest that  the  Puma  is  more  closely  related  to  the  yagouaroundi  than  the  domestic  cat.  So  as  of  1993  the  puma  was  removed  from  the  genus  Felis  and  placed  in  the  genus  Puma.  

Monachuswas  originally  considered  a  sub  genus  of  Pithecia,  but  is  currently  being  revised..

Agouti refers  to  the  common  name  of  a  species found  in  the  genus  Dasyprocta,  so  the  International  Commission  on  Zoological  Nomenclature  ruled  in  1998  that  the  appropriate  genus  name  is  Cuniculus.The  genus  Hydrochaeris  andHydrochoerus can  be  used  interchangeably,  but  Hydrochaeris  is  used  more  frequently.  

This  species  was  placed  in  genus Dicotyles by  some  authors,  the  genus Pecari by  Grubb  (1993,  2005),  and  the  genus Tayassu by  Jones et  al.  (1992).  MtDNA  data  support  the  recognition  of  three  genera  of  extant  peccaries: Catagonus, Pecari,  and Tayassu,  with  this  species  in  the  genus Pecari (Theimer  and  Keim  1998,  Gongora  and  Moran  2005).  DNA  studies  suggest  that P.  tajacumay  consist  of  at  least  two  major  clades  or  lineages  comprising  specimens  from  North/Central  and  South  America  (Gongora et  al. 2006,  2011)  with  structural  chromosomal  differences  (Gongora et  al. 2000,  Adega et  al. 2006).