rebel repotentiatingbetalactam antibiotics · rebel project 3 repotentiatingbeta-lactam antibiotics...
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REBELREpotentiating BEta Lactam antibiotics
Mariël Pikkemaat Paris, 13-01-2017
REBEL
�Mariël Pikkemaat (coordinator)
RIKILT – Wageningen UR, Netherlands
�Natalie Strynadka,
University of British Columbia, Canada
� Fredrik Almqvist,
Umeå University, Sweden
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REBEL project
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�REpotentiating BEta-Lactam antibiotics
�Restoration of the effectivity of a proven
successful class of antibiotic drugs
Beta-lactam antibiotics
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Penicillins
Cephalosporins
Carbapenems
Monobactams(Aztreonam)
Antibacterial mechanism
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Enzyme establishing cross-links PG cell wall
β-lactam antibiotic
Deactivated enzyme
Cross-linked proteinProtein (not cross-linked)
Polysaccharide backbone
Beta-lactam resistance
�Bacteria start producing beta-lactam hydrolysing
enzymes
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Beta-lactamases
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Wright 2005, Adv. Drug Deliv Rev 57(10) 1451
A. Serine beta-lactamase
B. Metallo beta-lactamase
Beta lactamase classification
� Structural and biochemical classification
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Based upon Bush Ann NY Acad Sci. 1277 (2013) 84-90
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Carbapenemases
12NDM producers, Dortet et al. 2014 BioMed Res Int
KPC producing Klebsiella pneumoniaeLee et al. 2016 Front Microbiol
Circumventing resistance
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Supplement the beta-lactam antibiotic
with a beta-lactamase inhibitor
Beta-lactamase inhibition
�β-lactamase inhibitors currently used in
combination with β-lactam antibiotics:
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Clavulanic acid Sulbactam Tazobactam
Avibactam
Beta-lactamase inhibition
�Similarity to the antibiotic > risk of inhibitor
resistant β-lactamases
�Not effective against metallo β-lactamases (and
Oxa’s)
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Urgent need for novelbeta-lactamase inhibitors
REBEL project
�Isolation of new beta-lactamase inhibitors from
botanical origin
�Plant Extract Collection Kiel in Schleswig-
Holstein (PECKISH)
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PECKISH library
>4600 aqueous, ethanolic and other extracts
>860 different plant species, representing ~190 plant
families, 11 different plant tissues
�Origin: health shops, outdoor cultivated plants,
marine algae, herbs from Traditional Chinese
Medicine, African plants and known medical plants
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Screening strategy
Development of bacterial tester strains
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Development tester strains
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Screening strategy
� Measure inhibition of bacterial growth with resazurin
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t = 0 t ~20 hBacterial growth
Growth inhibited
Screening strategy
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Duplicate plates
Non-specific antimicrobial activity
Beta-lactamase inhibition
No Ampicillin Ampicillin
Screening strategy
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- β lactam + β lactam
Bacterial tester strain
Library Botanical extracts
Replica plates
Results
� 15-30 % of extracts inhibit bacterial growth
� unexpectedly large number of hits
� significant number of extracts showed inhibition across the entire set of available beta lactamases
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KPC-2 OXA-48 OXA-23 SHV-2 VIM-2 IMP-1 TEM-24 CMY-2 CTX-M-15
HIT 197 125 486 70 218 387 76 196 316
E-HIT 69 50 79 361 159 334 106 257 133
Selection
� Check expression:
In Situ Screening of Bacterial Colonies
� T
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- ampicillin
Transfer of 10 µl to PVDF membrane
Microwave induced lysis on top of Whatman paper soaked in 5% SDS
Electro transfer to remove SDS at (50 volts for 50 min)
BSA Blocking, mouse anti-His AB, anti-mouse Alkaline phosphatase AB
> colour development
Selection
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Selection
� Expression results confirmed our suspicion: many of the “broad spectrum” HITs caused by inhibition of expression
� Starting from each individual beta lactamase, scored:
(a) similar beta lactamase hit patterns
(b) similar pattern with other extracts of the same botanical
� Check expression > final selection
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75 Extracts
Potency testing
Bioassay guided fractionation
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Gradient Liquid chromatography
Flow split
Bioassay plateDuplicate – identificationUPLC/QTOFMS(/MS) GC/TOFMS, NMR
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New lead compounds
Structure-guided lead optimization
NewBeta lactamase
inhibitors
Kinetic characterization
Structural characterization
Cytotoxicity testing
Efficacy on clinical isolates
Isolation or synthesis of standards
Synthesis of analogues
Acknowledgements
� Funding organizations:
● Swedish Research Council
● Canadian Institutes of Health Research
● ZonMw - The Netherlands Organisation for Health
Research and Development
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