Publications based on National HPC in DK, 2015-2017 sorted by Journal Impact Factor 2017 (N=290) This document is a mapping of scientific publications that included computational resources from a Danish

National DeiC HPC facility. It is important to state that this version does not provide a complete list of all

publications, however, must be read as a work-in-progress list. Version 05032018.

The aim is to document the value of HPC in Danish Research by counting the number of scientific publications within the different Research Areas and by mapping their ranking according to the International “Thomson Reuters” Journal Impact Factor (2017). A Journal Impact Factor (JIF) refers to an average number of citations to recent articles published in a particular journal in a given year. It is a proxy for the relative importance of a journal within its field. The higher impact factor the more cited the paper was from the particular journal.

Nature Reviews Drug Discovery Impact Factor: 57.0 Sanz, F. et al. (2017) Legacy data sharing to improve drug safety assessment: the eTOX project. Nature Reviews Drug Discovery. DOI: 10.1038/nrd.2017.177.

Nature Biotechnology Impact Factor: 41.667 Schölz, C. et al. (2015) Acetylation site specificities of lysine deacetylase inhibitors in human cells. Nature Biotechnology. DOI: 10.1038/nbt.3130.

Nature Reviews Genetics Impact Factor: 40.282 Hu, J. X. et al. (2016) Network biology concepts in complex disease comorbidities. Nature Reviews Genetics. DOI: 10.1038/nrg.2016.87.

Nature Impact Factor: 40.137 Lasko, L. M. et al. (2017) Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours. Nature. DOI: 10.1038/nature24028.

Maretty, L. et al. (2017) Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. Nature. DOI: 10.1038/nature23264.

Northcott, P. A. et al. (2017) The whole-genome landscape of medulloblastoma subtypes. Nature DOI: 10.1038/nature22973.

Stella, S. et al. (2017) Structure of the Cpf1 endonuclease R-loop complex after target DNA cleavage. Nature. DOI: 10.1038/nature22398.

Malaspinas, A. S. et al. (2016) A genomic history of Aboriginal Australia. Nature. DOI: 10.1038/nature18299.

Pedersen, H. K. et al. (2016) Human gut microbes impact host serum metabolome and insulin sensitivity. Nature. DOI: 10.1038/nature18646.

Allentoft, M. E. et al. (2015) Population genomics of Bronze Age Eurasia. Nature. DOI:10.1038/nature14507.

Forslund, K. et al. (2015) Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature. DOI: 10.1038/nature15766.

Science Impact Factor: 37.205 Somyajit, K. et al. (2017) Redox-sensitive alteration of replisome architecture safeguards genome integrity. Science. DOI: 10.1126/science.aao3172.

Cell Impact Factor: 30.410 Rasmussen, S. et al. (2015) Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago. Cell. DOI: S0092867415013227.

Nature Genetics Impact Factor: 27.959 Weischenfeldt, J. L. et al. (2017) Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking. Nature Genetics. DOI: 10.1038/ng.3722.

Weiner, D. J. et al. (2017) Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders. Nature Genetics. DOI: 10.1038/ng.3863.

Ehret, G. B. et al. (2016) The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals. Nature Genetics. DOI: 10.1038/ng.3667.

Ellinghaus, D. et al. (2016) Analysis of five chronic inflammatory diseases indentifies 27 new associations and highlights disease-specific patterns at shared loci. Nature Genetics. DOI: 10.1038/ng.3528.

Nature Methods Impact Factor: 25.062 Li, T. et al. (2017) A scored human protein-protein interaction network to catalyze genomic interpretation. Nature Methods. DOI: 10.1038/nmeth.4083.

Schölz, C. et al. (2015) Avoiding abundance bias in the functional annotation of posttranslationally modified proteins. Nature Methods. DOI: 10.1038/nmeth.3621.

Immunity Impact Factor: 22.845 Cheuk, S. et al. (2017) CD49a Expression Defines Tissue-Resident CD8(+) T Cells Poised for Cytotoxic Function in Human Skin. Immunity. DOI: 10.1016/j.immuni.2017.01.009.

Nature Cell Biology Impact Factor: 20.060 Hein, J. B. et al. (2017) Distinct kinetics of serine and threonine dephosphorylation are essential for mitosis. Nature Cell Biology. DOI: 10.1038/ncb3634.

European Heart Journal Impact Factor: 19.651 Ellesøe, S. G. et al. (2017) Familial co-occurrence of congenital heart defects follows distinct patterns. European Heart Journal. DOI: 10.1093/eurheartj/ehx314.

Gut Impact Factor: 16.658 Roager H. M. et al. (2017) Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial. Gut. DOI: 10.1136/gutjnl-2017-314786.

Molecular Cell Impact Factor: 14.714 Choy, M. S. (2017) Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery. Molecular Cell. DOI: 10.1016/j.molcel.2017.01.014.

Toledo, L. et al. (2017) Replication Catastrophe: When a Checkpoint Fails because of Exhaustion. Molecular Cell. DOI: 10.1016/j.molcel.2017.05.001.

Hertz, E. P. T. et al. (2016) A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase. Molecular Cell. DOI: S1097276516302829.

Neuron Impact Factor: 14.024

Hosp, F. & Mann, M. (2017) A primer on concepts and applications of proteomics in neuroscience. Neuron. DOI: 10.1016/j.neuron.2017.09.025.

Circulation Research Impact Factor: 13.965

Jones, G. T. et al. (2016) Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci. Circulation Research. DOI: 10.1161/CIRCRESAHA.116.308765.

Journal of the American Chemical Society Impact Factor: 13.858 Husen, P. & Solov’yov, I. A. (2016) Spontaneous Binding of Molecular Oxygen at the Q o -Site of the bc 1 Complex Could Stimulate Superoxide Formation. Journal of the American Chemical Society. DOI: 10.1021/jacs.6b04849.

Tian, P. et al (2015) Structure of a Functional Amyloid Protein Subunit Computed Using Sequence Variation. Journal of the American Chemical Society. DOI: 10.1021/ja5093634.

Molecular Psychiatry Impact Factor: 13.204

Pedersen, C. B. et al. (2017) The iPSYCH2012 case-cohort sample: New directions for unravelling genetic and environmental architectures of severe mental disorders. Molecular Psychiatry. DOI: 10.1038/mp.2017.196.

Annals of Rheumatic Diseases Impact Factor: 12.811

Brauner, S. et al. (2017) H1N1 vaccination in Sjögren's syndrome triggers polyclonal B cell activation and promotes autoantibody production. Annals of the Rheumatic Diseases. DOI: 10.1136/annrheumdis-2016-210509.

Nature Structural & Molecular Biology Impact Factor: 12.595 Hendriks, I. A. et al. (2017) Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation. Nature Structural & Molecular Biology. DOI: 10.1038/nsmb.3366.

Stella, S., Alcón, P. (2017) Class 2 CRISPR–Cas RNA-guided endonucleases: Swiss Army knives of genome editing. Nature Structural & Molecular Biology. DOI: 10.1038/nsmb.3486.

Nature Communications Impact Factor: 12.124 Doll, S. et al. (2017) Region and cell-type resolved quantitative proteomic map of the human heart. Nature Communications. DOI: 10.1038/s41467-017-01747-2.

Hopkins, J. F. et al. (2017) Mitochondrial mutations drive prostate cancer aggression. Nature Communications. DOI: 10.1038/s41467-017-00377-y.

Jiang, X. et al. (2017) Dissemination of antibiotic resistance genes from antibiotic producers to pathogens. Nature Communications. DOI: 10.1038/ncomms15784.

Sapkota, Y. et al. (2017) Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism. Nature Communications. DOI: 10.1038/ncomms15539.

Yang, B. et al. (2017) Protein-altering and regulatory genetic variants near GATA4 implicated in bicuspid aortic valve. Nature Communications. DOI: 10.1038/ncomms15481.

Zhang, G. et al. (2017) Bub1 positions Mad1 close to KNL1 MELT repeats to promote checkpoint signaling. Nature Communications. DOI: 10.1038/ncomms15822.

Menzel, P. et al. (2016) Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nature Communications. DOI: 10.1038/ncomms11257.

Besenbacher, S. et al. (2015) Novel variation and de novo mutation rates in population wide de novo assembled Danish trios. Nature Communications. DOI: 10.1038/ncomms6969.

Munck, C. et al. (2015) Limited dissemination of the wastewater treatment plant core resistome. Nature Communications. DOI: 10.1038/ncomms9452.

Nature Microbiology Impact Factor: None Plichta, D. R. et al. (2016) Transcriptional interactions suggest niche segregation among microorganisms in the human gut. Nature Microbiology. DOI: 10.1038/nmicrobiol.2016.152.

Roager, H.M. et al. (2016) Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut. Nature Microbiology. DOI: 10.1038/nmicrobiol.2016.93.

Genome Research Impact Factor: 11.922

Jensen, J. M. et al. (2017) Assembly and analysis of 100 full haplotypes from the Danish population. Genome Research. DOI:10.1101/gr.218891.116.

Seemann, S. E. et al. (2017) The identification and functional annotation of RNA structures conserved in vertebrates. Genome Research. DOI: 10.1101/gr.208652.116.

Annals of Oncology Impact Factor: 11.855

Favero, F. et al. (2015) Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome. Annals of Oncology. DOI: 10.1093/annonc/mdv127.

Biological Psychiatry Impact Factor: 11.412

Martin, J. et al. (2017) A genetic investigation of sex bias in the prevalence of attention deficit hyperactivity disorder. Biological Psychiatry. DOI: 10.1016/j.biopsych.2017.11.026.

Nucleic Acids Research Impact Factor: 10.162

Han, W. et al. (2017) Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail. Nucleic Acids Research. DOI: 10.1093/nar/gkx726.

Nguyen, D. T. et al. (2017) Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Research. DOI: 10.1093/nar/gkw1072.

Pentzold, C. et al. (2017) FANCD2 binding identifies conserved fragile sites at large transcribed genes in avian cells. Nucleic Acids Research. DOI: 10.1093/nar/gkx1260.

Pitchai, G. P. et al. (2017) A novel TPR-BEN domain interaction mediates PICH-BEND3 association. Nucleic Acids Research. DOI: 10.1093/nar/gkx792.

Szklarczyk, D. et al. (2017) The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Research. DOI: 10.1093/nar/gkw937.

van der Helm, E. et al. (2017) Rapid resistome mapping using nanopore sequencing. Nucleic Acids Research. DOI: 10.1093/nar/gkw1328.

Huerta-Cepas, J. et al. (2016) eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Research. DOI: 10.1093/nar/gkv1248.

Lambrugh, M. et al. (2016) DNA-binding protects p53 from interactions with cofactors involved in transcription-independent functions. Nucleic Acids Research. DOI: 10.1093/nar/gkw770.

Szklarczyk, D. et al. (2016) STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. Nucleic Acids Research. DOI: 10.1093/nar/gkv1277.

Ison, J. et al. (2015) Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. DOI: 10.1093/nar/gkv1116.

Santos, A. et al. (2015) Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. Nucleic Acids Research. DOI: 10.1093/nar/gku1092.

Szklarczyk, D. et al. (2015) STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Research. DOI: 10.1093/nar/gku1003.

Molecular Systems Biology Impact Factor: 9.750

Geyer, P. E. et al. (2017) Revisiting biomarker discovery by plasma proteomics. Molecular Systems Biology. DOI: 10.15252/msb.20156297.

Proceedings of the National Academy of Sciences of the USA Impact Factor: 9.661

Jensen, H. et al. (2017) EBI3 regulates the NK cell response to mouse cytomegalovirus infection. Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1700231114. .

Su, D. et al. (2017) PTIP chromatin regulator controls development and activation of B cell subsets to license humoral immunity in mice. Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1707938114.

Kjartansdóttir, K. R. et al. (2015) Traces of ATCV-1 associated with laboratory component contamination. Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1423756112 .

Librado, P. et al. (2015) Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1513696112 .

Journal of Physical Chemistry Letters Impact Factor: 9.353

Reinholdt, P. (2017) Polarizable Density Embedding: A Solution to the Electron Spill-Out Problem in Multiscale Modeling. Journal of Physical Chemistry Letters. DOI: 10.1021/acs.jpclett.7b02788.

GigaScience Impact Factor: 8.871 Mak, S. S. T. et al. (2017) Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. GigaScience. DOI:10.1093/gigascience/gix049.

Liu, S. et al. (2015) Discovery, genotyping and characterization of structural variation and novel sequence at sin- gle nucleotide resolution from de novo genome assemblies on a population scale. GigaScience. DOI: 10.1186/s13742-015-0103-4.

Current Biology

Impact Factor: 8.851

Ashot, M. et al. (2017) Eight millennia of matrilineal genetic continuity in the South Caucasus. Current Biology.

DOI: 10.1016/j.cub.2017.05.087.

Der Sarkissian, C. et al. (2015) Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse.

Current Biology. DOI: 10.1016/j.cub.2015.08.032.

Chemical Science

Impact Factor: 8.668

Wang, Y. et al. (2017) Biomolecular Conformational Changes and Ligand Binding: From Kinetics to

Thermodynamics. Chemical Science. DOI: 10.1039/c7sc01627a.

Autophagy Impact Factor: 8.593

Capizzi, M. et al. (2017) MIR7–3HG , a MYC-dependent modulator of cell proliferation, inhibits autophagy by a regulatory loop involving AMBRA1. Autophagy. DOI: 10.1080/15548627.2016.1269989.

EMBO Reports Impact Factor: 8.568

Schubert, L. et al. (2017) RADX interacts with single-stranded DNA to promote replication fork stability. EMBO Reports. DOI: 10.15252/embr.201744877.

Cell Systems Impact Factor: 8.406

Bekker-Jensen D. B. et al. (2017) An optimized shotgun strategy for the rapid generation of comprehensive human proteomes. Cell Systems. DOI: 10.1016/j.cels.2017.05.009.

Kirk, I. K. et al. (2017) Chromosome-wise protein interaction patterns and their impact on functional implications of large-scale genomic aberrations. Cell Systems. DOI: 10.1016/j.cels.2017.01.001.

Cell Reports Impact Factor: 8.282

Chakraborty D. et al. (2017) lncRNA Panct1 maintains mouse embryonic stem cell identity by regulating TOBF1 recruitment to Oct-Sox sequences in early G1. Cell Reports. DOI: 10.1016/j.celrep.2017.11.045.

Francavilla, C. et al. (2017) Phosphoproteomics of primary cells reveals druggable kinase signatures in ovarian cancer. Cell Reports. DOI: 10.1016/j.celrep.2017.03.015.

Munk, S. et al. (2017) Proteomics reveals global regulation of protein SUMOylation by ATM and ATR kinases during replication stress. Cell Reports. DOI: 10.1016/j.celrep.2017.09.059.

Wewer Albrechtsen NJ. et al. (2017) Circulating glucagon 1-61 regulates blood glucose by increasing insulin secretion and hepatic glucose production. Cell Reports. DOI: 10.1016/j.celrep.2017.10.034.

Emerging Infectious Diseases Impact Factor: 8.220

Mollerup, S. et al. (2017) Cutavirus in cutaneous malignant melanoma. Emerging Infectious Diseases. DOI: 10.3201/eid2302.161564.

Metabolic Engineering Impact Factor: 8.142

Lehning, C. et al. (2017) Assessing glycolytic flux alterations resulting from genetic perturbations in E. coli using a biosensor. Metabolic Engineering. DOI: 10.1016/j.ymben.2017.07.002.

International Journalof Epidemiology Impact Factor: 7.738

Tan, Q. et al. (2016) Epigenetic drift in the aging genome: a ten-year follow-up in an elderly twin cohort. International Journal of Epidemiology. DOI: 10.1093/ije/dyw132.

eLife Impact Factor: 7.725

Wang, Y. et al. (2016) Mapping transiently formed and sparsely populated conformations on a complex energy landscape. eLife. DOI: 10.7554/eLife.17505.

Oncogene Impact Factor: 7.519

Zamborszky, J. et al. (2017) Loss of BRCA1 or BRCA2 markedly increases the rate of base substitution mutagenesis and has distinct effects on genomic deletions. Oncogene. DOI: 10.1038/onc.2016.243.

Bioinformatics Impact Factor: 7.307

Armenteros, J. J. A. et al. (2017) DeepLoc: prediction of protein subcellular localization using deep learning. Bioinformatics. DOI: 10.1093/bioinformatics/btx431.

Cannon, D. C. et al. (2017) Tin-X:Target Importance and Novelty Explorer. Bioinformatics. DOI: 10.1093/bioinformatics/btx200.

Jurtz, V.I. et al. (2017) An introduction to Deep learning on biological sequence data - Examples and solutions. Bioinformatics. DOI: 10.1093/bioinformatics/btx531.

Serviss, J. T. et al. (2017) ClusterSignificance: a bioconductor package facilitating statistical analysis of class cluster separations in dimensionality reduced data. Bioinformatics. DOI: 10.1093/bioinformatics/btx393.

Thomsen, M. C. F. et al. (2017) RUCS: Rapid identification of PCR primers for unique core sequences. Bioinformatics. DOI: 10.1093/bioinformatics/btx526.

Pafilis, E. et al. (2015) ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life. Bioinformatics. DOI: 10.1093/bioinformatics/btv045.

Eurosurveillance Impact Factor: 7.202

Terkelsen, D. et al. (2017) Multidrug-resistant Neisseria gonorrhoeae infection with ceftriaxone resistance and intermediate resistance to azithromycin, Denmark, 2017. Eurosurveillance. DOI: 10.2807/1560-7917.ES.2017.22.42.17.00659.

ACS Photonics Impact Factor: 6.756

Ding, F. et al. (2017) Beam-Size-Invariant Spectropolarimeters Using Gap-Plasmon Metasurfaces. ACS Photonics. DOI:10.1021/acsphotonics.6b01046.

Arteriosclerosis Thrombosis and Vascular Biology Impact Factor: 6.607

Turner, A. W. et al. (2016) Functional Analysis of a Novel Genome-Wide Association Study Signal in SMAD3 That Confers Protection From Coronary Artery Disease Significance. Arteriosclerosis Thrombosis and Vascular Biology. DOI: 10.1161/ATVBAHA.116.307294.

Molecular and Cellular Proteomics Impact Factor: 6.540

Kulak, N. A. et al. (2017) Loss-less nano-fractionator for high sensitivity, high coverage proteomics. Molecular and Cellular Proteomics. DOI: 10.1074/mcp.O116.065136.

Sanchez-Quiles, V. et al. (2017) Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is necessary for proper ubiquitination and degradation of the Epidermal Growth Factor Receptor. Molecular and Cellular Proteomics. DOI: 10.1074/mcp.M116.066423.

Weinert, B. T. et al. (2017) Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome. Molecular and Cellular Proteomics. DOI: 10.1074/mcp.M117.067587.

Bassani-Sternberg, M. et al. (2015) Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation. Molecular and Cellular Proteomics. DOI: 10.1074/mcp.M114.042812.

Science Signalling Impact Factor: 6.494

Emdal, K. B. et al. (2015) Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. Science Signaling. DOI: 10.1126/scisignal.2005769.

Frontiers in Immunology Impact Factor: 6.429

Bjerregaard, A.-M. et al. (2017) An analysis of natural T cell responses to Predicted Tumor neoepitopes. Frontiers in Immunology. DOI: 10.3389/fimmu.2017.01566.

Svendsen, A. J. et al. (2016) Differentially Methylated DNA Regions in Monozygotic Twin Pairs Discordant for Rheumatoid Arthritis: An Epigenome-Wide Study. Frontiers in Immunology. DOI: 10.3389/fimmu.2016.00510.

Carbon Impact Factor: 6.337

Jacobsen, K. W. et al. (2016) All-graphene edge contacts: Electrical resistance of graphene T-junctions. Carbon. DOI: 10.1016/j.carbon.2016.01.084.

Analytical Chemistry Impact Factor: 6.320

Cramer, C. N. et al. (2017) Complete mapping of complex disulfide patterns with closely-spaced cysteines by in-source reduction and data-dependent mass spectrometry. Analytical Chemistry. DOI: 10.1021/acs.analchem.7b00424.

Chemical Communications Impact Factor: 6.319

Hornum, M. et al. (2017) Condensing the information in DNA with double-headed nucleotides. Chemical Communications. DOI:10.1039/c7cc05047j.

Edwards, S. L. et al. (2015) Targeting VEGF with LNA-stabilized G-rich oligonucleotide for efficient breast cancer inhibition. Chemical Communications. DOI: 10.1039/c5cc02756j.

Journal of Medical Chemistry Impact Factor: 6.259

Frimurer, T. M. et al. (2017) Model-based discovery of synthetic agonists for the Zn2+-sensing G-protein-coupled receptor 39 (GPR39) reveals novel biological functions. Journal of Medicinal Chemistry. DOI: 10.1021/acs.jmedchem.6b00648.

Molecular Biology and Evolution Impact Factor: 6.202

Huerta-Cepas, J. et al. (2017) Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper. Molecular Biology and Evolution. DOI: 10.1093/molbev/msx148.

PLoS Genetics Impact Factor: 6.100

Folkersen, L. et al. (2017) Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease. PLoS Genetics. DOI: 10.1371/journal.pgen.1006706.

Skov, L. et al. (2017) Danish Pan Genome Consortium, Schierup MH. Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. PLoS Genetics. DOI: 10.1371/journal.pgen.1006834.

Diabetologia Impact Factor: 6.080

Crèvecoeur, I. et al. (2017) Early differences in islets from prediabetic NOD mice: combined microarray and proteomic analysis. Diabetologia. DOI: 10.1007/s00125-016-4191-1.

Windeløv, J. A. et al. (2017) Why is it so difficult to measure glucagon-like peptide-1 in a mouse? Diabetologia. DOI: 10.1007/s00125-017-4347-7.

Archives of Toxicology Impact Factor: 5.901

Leist, M. et al. (2017) Adverse outcome pathways: opportunities, limitations and open questions. Archives of Toxicology. DOI: 10.1007/s00204-017-2045-3.

Cardiovascular Research Impact Factor: 5.878

Karadimou, G. et al. (2016) Ex Low TLR7 gene expression in atherosclerotic plaques is associated with major adverse cardio- and cerebrovascular events. Cardiovascular Research. DOI: 10.1093/cvr/cvw231.

Molecular Cancer Therapeutics Impact Factor: 5.764

Radic-Sarikas, B. et al. (2017) Combinatorial drug screening identifies Ewing Sarcoma-specific sensitivities. Molecular Cancer Therapeutics. DOI: 10.1158/1535-7163.MCT-16-0235.

Free Radical Biology and Medicine Impact Factor: 5.606

Skarpengland, T. et al. (2016) Enhanced base excision repair capacity in carotid atherosclerosis may protect nuclear DNA but not mitochondrial DNA. Free Radical Biology and Medicine. DOI: 10.1016/j.freeradbiomed.2016.07.001.

British Journal of Pharmacology Impact Factor: 5.491

Khammy, M. M. et al. (2017) PDE1A inhibition elicits cGMP-dependent relaxation of rat mesenteric arteries. British Journal of Pharmacology. DOI: 10.1111/bph.14034.

Human Molecular Genetics Impact Factor: 5.340

Belling, K. et al. (2017) Klinefelter syndrome comorbidities linked to increased X chromosome gene dosage and altered protein interactome activity. Human Molecular Genetics. DOI: 10.1093/hmg/ddx014.

Southwell, A. L. et al. (2017) A novel humanized mouse model of Huntington disease for preclinical development of therapeutics targeting mutant huntingtin alleles. Human Molecular Genetics. DOI: 10.1093/hmg/ddx021.

Hinds, D. A. et al. (2016) Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis. Human Molecular Genetics. DOI: 10.1093/hmg/ddw037

Chemistry A European Journal Impact Factor: 5.317

Tran, P. T. et al (2017) Diversity-Oriented Peptide Stapling: A Third Generation Copper-Catalysed Azide–Alkyne Cycloaddition Stapling and Functionalisation Strategy. Chemistry A European Journal. DOI: 10.1002/chem.201700128.

Clinical Microbiology and Infection Impact Factor: 5.292

Berg, E. S. et al. (2017) Norwegian patients and retail chicken meat share cephalosporin-resistant Escherichia coli and IncK/blaCMY-2resistance plasmids. Clinical Microbiology and Infection. DOI: 10.1016/j.cmi.2016.12.035.

Journal of Chemical Theory and Computation Impact Factor: 5.245 Hedegård, E. D. et al. (2017) Relativistic Polarizable Embedding. Journal of Chemical Theory and Computation. DOI: 10.1021/acs.jctc.7b00162.

Nåbo, L. J. et al. (2017) Computational Approach to Evaluation of Optical Properties of Membrane Probes. Journal of Chemical Theory and Computation. DOI: 10.1021/acs.jctc.6b01017.

Nåbo, L. J. et al. (2017) The Quality of the Embedding Potential Is Decisive for Minimal Quantum Region Size in Embedding Calculations: The Case of the Green Fluorescent Protein. Journal of Chemical Theory and Computation. DOI: 10.1021/acs.jctc.7b00528.

Nørby, M. S. et al. (2017) Modeling Electronic Circular Dichroism within the Polarizable Embedding Approach. Journal of Chemical Theory and Computation. DOI: 10.1021/acs.jctc.7b00712.

Steinmann, C. et al. (2017) Automated Fragmentation Polarizable Embedding Density Functional Theory (PE-DFT) Calculations of Nuclear Magnetic Resonance (NMR) Shielding Constants of Proteins with Application to Chemical Shift Predictions. Journal of Chemical Theory and Computation. DOI: 10.1021/acs.jctc.6b00965.

Beerepoot, M. et al. (2016) Averaged Solvent Embedding Potential Parameters for Multiscale Modeling of

Molecular Properties. Journal of Chemical Theory and Computation. DOI:10.1021/acs.jctc.5b01000.

Hubert, M. et al. (2016) Investigation of Multiconfiguratio nal Short-Range Density Functional Theory for

Electronic Excitations in Organic Molecules. Journal of Chemical Theory and Computation. DOI:

10.1021/acs.jctc.5b01141.

Nørby, M. S. et al. (2016) Computational Approach for Studying Optical Properties of DNA Systems in Solution.

Journal of Chemical Theory and Computation. DOI: 10.1021/acs.jctc.6b00706.

OncoTarget

Impact Factor: 5.168

Li, S.et al. (2017) Differential DNA methylation patterns of polycystic ovarian syndrome in whole blood of

Chinese women. OncoTarget. DOI: 10.18632/oncotarget.9327.

Journal of Antimicrobial Chemotherapy

Impact Factor: 5.071

Zankari, E. et al. (2017) PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance

associated with chromosomal point mutations in bacterial pathogens. Journal of Antimicrobial

Chemotherapy. DOI: 10.1093/jac/dkx217.

Clausen, P. T. L. C. Et al. (2016) Benchmarking of methods for identification of antimicrobial resistance genes

in bacterial whole genome data. Journal of Antimicrobial Chemotherapy. DOI: 10.1093/jac/dkw18.

Molecular Cancer Research

Impact Factor: 4.974

Phung, B. et al. (2017) KIT(D816V) induces SRC-mediated tyrosine phosphorylation of MITF and altered

transcription program in melanoma. Molecular Cancer Research. DOI: 10.1158/1541-7786.MCR-17-0149.

Journal of the American Heart Association

Impact Factor: 4.863

Varghese, G. P. et al. (2016) NLRP3 Inflammasome Expression and Activation in Human Atherosclerosis.

Journal of the American Heart Association. DOI: 10.1161/JAHA.115.003031.

Physical Review Applied Impact Factor: 4.808 Pors, A. et al. (2016) Waveguide Metacouplers for In-Plane Polarimetry. Physical Review Applied. DOI: 10.1103/PhysRevApplied.5.064015.

Journal of Cosmology and Astroparticle Physics Impact Factor: 4.734 Emken, T. et al. (2017) DaMaSCUS: The Impact of Underground Scatterings on Direct Detection of Light Dark Matter. Journal of Cosmology and Astroparticle Physics. DOI: arXiv:1706.02249.

Translational Psychiatry Impact Factor: 4.730

Starnawska, A. et al. (2017) Differential DNA methylation at birth associated with mental disorder in individuals with 22q11.2 deletion syndrome. Translational Psychiatry. DOI: 10.1038/tp.2017.181.

Cancer Immunology, Immunotherapy Impact Factor: 4.711

Bjerregaard, A.-M. et al. (2017) MuPeXI: prediction of neo-epitopes from tumor sequencing data. Cancer Immunology, Immunotherapy. DOI: 10.1007/s00262-017-2001-3.

British Journal of Dermatology Impact Factor: 4.706

Wei, T. et al. (2016) USP2 as a potential link between miR-125b and psoriasis. British Journal of Dermatology. DOI: 10.1111/bjd.14916.

Human Mutation Impact Factor: 4.601 Vazquez, M. et al. (2016) wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases. Human Mutation. DOI: 10.1002/humu.22914.

Physical Review D Impact Factor: 4.568 Hansen, M. et al. (2017) SU(3) sextet model with Wilson fermions. Physical Review D. DOI: 10.1103/PhysRevD.96.034518.

Pica, C. et al. (2017) Conformal Phase Diagram of Complete Asymptotically Free Theories. Physical Review D. DOI: 10.1103/PhysRevD.96.074015.

Rantaharju, J. et al. (2017) Nambu–Jona-Lasinio model with Wilson fermions. Physical Review D. DOI: 10.1103/PhysRevD.95.014508.

Rantaharju, J. et al. (2017) Ideal Walking Dynamics via a Gauged NJL Model. Physical Review D. DOI:10.1103/PhysRevD.96.014512.

Arthur, R. et al. (2016) SU(2) gauge theory with two fundamental flavors: A minimal template for model building. Physical Review D. DOI: 10.1103/PhysRevD.94.094507.

Pica, C. and Sannino, F. (2016) Anomalous Dimensions of Conformal Baryons. Physical Review D. DOI: 10.1103/PhysRevD.94.071702.

Inflammatory Bowel Diseases Impact Factor: 4.525 Bang-Berthelsen, C. H. et al. (2016) GLP-1 Induces Barrier Protective Expression in Brunnerʼs Glands and Regulates Colonic Inflammation. Inflammatory Bowel Diseases. DOI: 10.1097/MIB.0000000000000847.

Environmental Research Letters Impact Factor: 4.404 Hauptmann, A. Z. E. L. et al. (2017) Contamination of the Arctic reflected in microbial metagenomes from the Greenland ice sheet. Environmental Research Letters. DOI: 10.1088/1748-9326/aa7445.

Journal of Proteome Research Impact Factor: 4.268 Mullari, M. et al. (2017) Specifying RNA-binding regions in proteins by peptide cross-linking and affinity purification. Journal of Proteome Research. DOI: 10.1021/acs.jproteome.7b00042.

Young, C. et al. (2017) Improved Reversed Phase Chromatography of Hydrophilic Peptides from Spatial and Temporal Changes in Column Temperature. Journal of Proteome Research. DOI: 10.1021/acs.jproteome.6b01055.

Scientific Reports Impact Factor: 4.259 Cai, Z. et al. (2017) The first draft reference genome of the American mink (Neovison vison). Scientific Reports. DOI: 10.1038/s41598-017-15169-z.

Friis, I. et al. (2017) Computational reconstruction reveals a candidate magnetic biocompass to be likely irrelevant for magnetoreception. Scientific Reports. DOI:10.1038/s41598-017-13258-7.

Han, M. et al. (2017) Glutamate Water Gates in the Ion Binding Pocket of Na+ Bound Na+, K+-ATPase. Scientific Reports. DOI: 10.1038/srep39829.

Li, S. et al. (2017) Identification, replication and characterization of epigenetic remodelling in the aging genome: a cross population analysis. Scientific Reports. DOI: 10.1038/s41598-017-08346-7.

Nag, S. et al. (2017) High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology. Scientific Reports. DOI: 10.1038/s41598-017-02724-x.

Paul, I. et al. (2017) The ubiquitin ligase Cullin5SOCS2 regulates NDR1/STK38 stability and NF-κB transactivation. Scientific Reports. DOI: 10.1038/srep42800.

Petersen, M. et al. (2017) Conformational preludes to the latency transition in PAI-1 as determined by atomistic computer simulations and hydrogen/deuterium-exchange mass spectrometry. Scientific Reports. DOI:10.1038/s41598-017-06290-0.

Pirone, L. et al. (2017) A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation. Scientific Reports. DOI: 10.1038/srep40756.

Radic-Sarikas, B. et al. (2017) Lapatinib potentiates cytotoxicity of YM155 in neuroblastoma via inhibition of the ABCB1 efflux transporter. Scientific Reports. DOI: 10.1038/s41598-017-03129-6.

Sapkota, Y. et al. (2017) Analysis of potential protein-modifying variants in 9000 endometriosis patients and 150000 controls of European ancestry. Scientific Reports. DOI: 10.1038/s41598-017-10440-9.

Smith, E. A. et al. (2017) DEK is required for homologous recombination repair of DNA breaks. Scientific Reports. DOI: 10.1038/srep44662.

Viloria, J. S. et al. (2017) An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass. Scientific Reports. DOI:10.1038/s41598-017-01498-6.

Beck, M. K. et al. (2016) Diagnosis trajectories of prior multi-morbidity predict sepsis mortality. Scientific Reports. DOI: 10.1038/srep36624.

Ding, F. et al. (2016) Broadband near-infrared metamaterial absorbers utilizing highly lossy metals. Scientific Reports. DOI: 10.1038/srep39445.

Hilbers et al. (2016) Tuning of the Na,K-ATPase by the beta subunit. Scientific Reports. DOI: 10.1038/srep20442.

Pedersen, J. B. et al. (2016) Multiscale description of avian migration: from chemical compass to behaviour modeling. Scientific Reports. DOI: 10.1038/srep36709.

Pors, A. L. et al. (2016) Random-phase metasurfaces at optical wavelengths. Scientific Reports. DOI: 10.1038/srep28448.

Samuelsen, S. V. et al. (2016) Synthetic oligonucleotide antigens modified with locked nucleic acids detect disease specific antibodies. Scientific Reports. DOI: 10.1038/srep35827.

Skarpengland, T. et al. (2016) Neil3-dependent base excision repair regulates lipid metabolism and prevents atherosclerosis in Apoe-deficient mice. Scientific Reports. DOI: 10.1038/srep28337.

Petersen, T. N. et al. (2015) Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance. Scientific Reports. DOI: 10.1038/srep11444.

Sjulstok, E. S. et al. (2015) Quantifying electron transfer reactions in biological systems: what interactions play the major role? Scientific Reports. DOI: 10.1038/srep18446.

Vinner, L. et al. (2015) Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing. Scientific Reports. DOI: 10.1038/srep13201.

Atherosclerosis Impact Factor: 4.239

Fairoozy, R. H. et al. (2017) Identifying low density lipoprotein cholesterol associated variants in the Annexin A2 (ANXA2) gene. Atherosclerosis. DOI: 10.1016/j.atherosclerosis.2017.04.010.

The Journal of Biological Chemistry Impact Factor: 4.125

Forghany, Z. et al. (2017) Control of endothelial cell tube formation by Notch ligand intracellular domain interactions with activator protein 1 (AP-1). The Journal of Biological Chemistry. DOI: 10.1074/jbc.M117.819045.

Physical Chemistry Chemical Physics Impact Factor: 4.123

Kattnig, D. R. et al. (2016) Electron spin relaxation in cryptochrome-based magnetoreception. Physical Chemistry Chemical Physics. DOI: 10.1039/c5cp06731f.

List, N. H. et al. (2016) Excited states in large molecular systems through polarizable embedding. Physical Chemistry Chemical Physics. DOI: 10.1039/c6cp03834d.

List, N. H. et al. (2016) Local electric fields and molecular properties in heterogeneous environments through polarizable embedding. Physical Chemistry Chemical Physics. DOI: 10.1039/c6cp00669h.

Papior, N. et al. (2016) Manipulating the voltage drop in graphene nanojunctions using a gate potential. Physical Chemistry Chemical Physics. DOI: 10.1039/C5CP04613K.

Steindal, A. H. et al. (2016) Open-ended response theory with polarizable embedding: Multiphoton absorption in biomolecular systems. Physical Chemistry Chemical Physics. DOI: 10.1039/c6cp05297e.

Arthritis Research & Therapy Impact Factor: 4.121

Shchetynsky, K. et al. (2017) Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis. Arthritis Research & Therapy. DOI: 10.1186/s13075-017-1220-5.

Journal of Cellular Physiology Impact Factor: 4.080

Giordano, A. et al. (2017) Mammary alveolar epithelial cells convert to brown adipocytes in post-lactating mice. Journal of Cellular Physiology. DOI: 10.1002/jcp.25858.

Frontiers in Microbiology Impact Factor: 4.076

Jahn, L. J. et al. (2017) Adaptive Laboratory Evolution of Antibiotic Resistance Using Different Selection Regimes Lead to Similar Phenotypes and Genotypes. Frontiers in Microbiology. DOI: 10.3389/fmicb.2017.00816.

Cellular Signalling Impact Factor: 3.937

Hendus-Altenburger, R. et al. (2017) A phosphorylation-motif for tuneable helix stabilisation in intrinsically disordered proteins–Lessons from the sodium proton exchanger 1 (NHE1). Cellular Signalling. DOI: 10.1016/j.cellsig.2017.05.015.

Computer Physics Communications Impact Factor: 3.936

Bussone, A. et al. (2017) On reweighting for twisted boundary conditions. Computer Physics Communications. DOI: 10.1016/j.cpc.2017.05.011.

Papior, N. et al. (2017) Improvements on non-equilibrium and transport Green function techniques: The next-generation TRANSIESTA. Computer Physics Communications. DOI: 10.1016/j.cpc.2016.09.022.

Soft Matter Impact Factor: 3.889

Pezeshkian, W. et al. (2016) Membrane invagination induced by Shiga toxin B-subunit: from molecular structure

to tube formation. Soft Matter. DOI: 10.1039/c6sm00464d.

Obesity Impact Factor: 3.873

Kristensen, M. M. et al. (2017) miRNAs in human subcutaneous adipose tissue: Effects of weight loss induced by

hypocaloric diet and exercise. Obesity. DOI: 10.1002/oby.21765.

Langmuir Impact Factor: 3.833

Doosti, A. et al. (2017) Membrane tubulation in lipid vesicles triggered by the local application of calcium ions. Langmuir. DOI:10.1021/acs.langmuir.7b01461.

ALTEX Impact Factor: 3.825

Taboureau, O. et al. (2017) Human Environmental Disease Network: A computational model to assess toxicology

of contaminants. ALTEX. DOI: 10.14573/altex.1607201.

Proteomics Clinical Applications Impact Factor: 3.814

Rondas, D. et al. (2015) A Proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. Proteomics Clinical Applications. DOI: 10.1002/prca.201400124.

Methods Impact Factor: 3.802

Pletscher-Frankild, S. et al. (2015) DISEASES: Text mining and data integration of disease-gene associations. Methods. DOI: 10.1016/j.ymeth.2014.11.020.

Frontiers in Genetics Impact Factor: 3.789

Pedersen, H. K. et al. (2017) Pancreatic islet protein complexes and their dysregulation in type 2 diabetes. Frontiers in Genetics. DOI: 10.3389/fgene.2017.00043.

New Journal of Physics Impact Factor: 3.786 Kattnig, D. R. et al. (2016) Electron spin relaxation can enhance the performance of a cryptochrome-based magnetic compass sensor. New Journal of Physics. DOI:10.1088/1367-2630/18/6/063007.

BMC Genomics Impact Factor: 3.729 Ahrenfeldt, J. et al. (2017) Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods. BMC Genomics. DOI: 10.1186/s12864-016-3407-6.

Gopalakrishnan, S. et al. (2017) The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics. BMC Genomics. DOI: 10.1186/s12864-017-3883-3.

Pons, T. et al. (2016) KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily. BMC Genomics. DOI: 10.1186/s12864-016-2723-1.

Journal of Clinical Microbiology Impact Factor: 3.712 Roer, L. et al. (2017) Development of a web tool for Escherichia coli subtyping based on fimH alleles. Journal of Clinical Microbiology. DOI: 10.1128/JCM.00737-17.

Mollerup, S. et al. (2016) Propionibacterium acnes - disease causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing. Journal of Clinical Microbiology. DOI: 10.1128/JCM.02723-15.

Biophysical Journal Impact Factor: 3.656 Jiang, Q. et al. (2017) Electrostatic Stabilization Plays a Central Role in Autoinhibitory Regulation of the Na+,K+-ATPase. Biophysical Journal. DOI: 10.1016/j.bpj.2016.12.008.

Kassem, M. M. et al. (2016) Structure of the bacterial cytoskeleton protein bactofilin by NMR chemical shifts and sequence variation. Biophysical Journal. DOI: 10.1016/j.bpj.2016.04.039.

DNA Repair Impact Factor: 3.610

Xing, M. et al. (2017) Synthetic lethality between murine DNA repair factors XLF and DNA-PKcs is rescued by inactivation of Ku70. DNA Repair. DOI: 10.1016/j.dnarep.2017.07.008.

Molecular Human Reproduction Impact Factor: 3.585

Lottrup, G. et al. (2017) Comparison of global gene expression profiles of microdissected human foetal Leydig

cells with their normal and hyperplastic adult equivalents. Molecular Human Reproduction.

DOI: 10.1093/molehr/gax012.

Journal of the Royal Society Interface Impact Factor: 3.579

Nielsen, C et al. (2017) Ascorbic acid may not be involved in cryptochrome-based magnetoreception. Journal of the Royal Society Interface. DOI: 10.1098/rsif.2017.0657.

Cell Cycle Impact Factor: 3.530

Hertz, E. P. T. & Nilsson, J. (2017) Localization of PP2A-B56 to centromeres in Drosophila. Cell Cycle. DOI: 10.1080/15384101.2017.1337986.

Biochimica et Biophysica Acta (BBA) – Biomembranes Impact Factor: 3.498 Siania, P. et al. (2016) An overview of molecular dynamics simulations of oxidized lipid systems, with a comparison of ELBA and MARTINI force fields for coarse grained lipid simulations. Biochimica et Biophysica Acta (BBA) – Biomembranes. DOI: 10.1016/j.bbamem.2016.03.031

Viruses Impact Factor: 3.465

Friis-Nielsen, J. et al. (2016) Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. Viruses. DOI: 10.3390/v8020053 JIF.

Molecular Medicine Impact Factor: 3.457

Folkersen, L. et al. (2016) Integration of Known DNA, RNA and Protein Biomarkers Provides Prediction of Anti-TNF Response in Rheumatoid Arthritis: Results from the COMBINE Study. Molecular Medicine. DOI: 10.2119/molmed.2016.00078.

PloS Neglected Tropical Diseases Impact Factor: 3.370

Engmark, M. et al. (2017) Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping. PLoS Neglected Tropical Diseases. DOI: 10.1371/journal.pntd.0005768.

Biogerontology Impact Factor: 3.231

Xu, C. et al. (2017) A genome-wide association study of cognitive function in Chinese adult twins. Biogerontology. DOI: 10.1007/s10522-017-9725-5.

Journal of Computational Chemistry Impact Factor: 3.229

Hrsak, D. et al. (2017) Optimization and transferability of non-electrostatic repulsion in the polarizable density embedding model. Journal of Computational Chemistry. DOI: 10.1002/jcc.24859.

Witzke, S. et al. (2017) An averaged polarizable potential for multiscale modeling in phospholipid membranes. Journal of Computational Chemistry. DOI: 10.1002/jcc.24718.

Nørby, M. S. et al. (2016) Multipole moments for embedding potentials: Exploring different atomic allocation algorithms. Journal of Computational Chemistry. DOI: 10.1002/jcc.24403.

Journal of Physical Chemistry B Impact Factor: 3.177 Husen, P. et al. (2017) Mutations at the Q o Site of the Cytochrome b c 1 Complex Strongly Affect Oxygen Binding. The Journal of Physical Chemistry B. DOI: 10.1021/acs.jpcb.6b08226.

Salo, A. B. et al. (2017) Charge Transfer at the Q o -Site of the Cytochrome bc 1 Complex Leads to Superoxide Production. Journal of Physical Chemistry B. DOI:10.1021/acs.jpcb.6b10403.

Barragan, A. M. et al. (2016) Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex. Journal of Physical Chemistry B. DOI:10.1021/acs.jpcb.6b07394.

Bruhn, D. S. et al. (2016) Quantifying the Relationship Between Curvature and Electric Potential in Lipid Bilayers. Journal of Physical Chemistry B. DOI:10.1021/acs.jpcb.6b03439.

Barragan, A. M. et al. (2015) Identification of Ubiquinol Binding Motifs at the Qo-Site of the Cytochrome bc1 Complex. Journal of Physical Chemistry B. DOI:10.1021/jp510022w.

Reproduction Impact Factor: 3.100

Hay-Schmidt, A. et al. (2017) Prenatal exposure to paracetamol/acetaminophen and precursor aniline impairs masculinisation of male brain and behaviour. Reproduction. DOI: 10.1530/REP-17-0165.

Journal of Computer-Aided Molecular Design Impact Factor: 3.028

Alba J. et al. (2017) Structure and dynamics of mesophilic variants from the homing endonuclease I-Dmol. Journal of Computer-Aided Molecular Design. DOI: 10.1007/s10822-017-0087-5.

Journal of Chemical Physics Impact Factor: 2.965

List, N. H.et al. (2017) A quantum-mechanical perspective on linear response theory within polarizable embedding. Journal of Chemical Physics. DOI:10.1063/1.4985565.

Nåbo, L. J. et al. (2016) Embedding beyond electrostatics-The role of wave function confinement. Journal of Chemical Physics. DOI:10.1063/1.4962367.

Powder Technology Impact Factor: 2.942

Hærvig, J et al. (2017) On the adhesive JKR contact and rolling models for reduced particle stiffness discrete element simulations. Powder Technology. DOI: 10.1016/j.powtec.2017.07.006.

Biochemistry Impact Factor: 2.938

Poongavanam, V. et al. (2016) Computational analysis of sterol ligand specificity of the Niemann Pick C2 protein. Biochemistry. DOI:10.1021/acs.biochem.6b00217.

Witzke, S. et al. (2016) Molecular Dynamics Simulations Reveal the Conformational Flexibility of Lipid II and Its Loose Association with the Defensin Plectasin in the Staphylococcus aureus Membrane. Biochemistry. DOI:10.1021/acs.biochem.5b01315.

Journal of Cancer Impact Factor: 2.916 Rizzo, M. et al. (2017) Discovering the miR-26a-5p targetome in prostate cancer cells. Journal of Cancer. DOI: 10.7150/jca.18396.

Bioscience Reports Impact Factor: 2.906 Wei, T. et al. (2016) MicroRNA 486-3P as a stability marker in acute coronary syndrome. Bioscience Reports. DOI: 10.1042/BSR20160023.

Tropical Medicine & Internation Health Impact Factor: 2.850 Kumburu, H. H. et al. (2017) Patterns of infections, aetiological agents, and antimicrobial resistance at a tertiary care hospital in northern Tanzania. Tropical Medicine & Internation Health. DOI: 10.1111/tmi.12836.

Journal of Physical Chemistry A Impact Factor: 2.847 Hubert, M. et al. (2016) Excitation Spectra of Nucleobases with Multiconfigurational Density Functional Theory. The Journal of Physical Chemistry A. DOI: 10.1021/acs.jpca.5b09662.

Journal of General Virology Impact Factor: 2.838 Hagberg, E. E. et al. (2017) Evolutionary analysis of whole-genome sequences confirms inter-farm transmission of Aleutian mink disease virus. Journal of General Virology. DOI: 10.1099/jgv.0.000777.

PLOS ONE Impact Factor: 2.806

Christodoulides, N. et al. (2017) Gene expression plasticity across hosts of an invasive scale insect species. PLOS ONE. DOI: 10.1371/journal. pone.0176956.

Hansen, C. S. et al. (2017) ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. PLOS ONE. DOI: 10.1371/journal.pone.0168453.

Kirk, I. K. et al. (2017) The impact of the protein interactome on the syntenic structure of mammalian genomes. PLOS ONE. DOI :10.1371/journal.pone.0179112.

Petersen, T. N. et al. (2017) MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads. PLOS ONE. DOI: 10.1371/journal.pone.0176469.

Jurtz, V.I. et al. (2016) MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets. PLOS ONE. DOI: 10.1371/journal.pone.0163111.

Reese, A. et al. (2016) How Far Does a Receptor Influence Vibrational Properties of an Odorant? Efthimios M. C. Skoulakis (ed.). PLOS ONE. DOI: 10.1371/journal.pone.0152345.

Jensen, M. K. et al. (2015) Transcriptome and genome size analysis of the Venus flytrap. PLOS ONE. DOI:10.1371/journal.pone.0123887.

Pasific Symposium on Biocomputing Impact Factor: 2.750

Beck, M. K. et al. (2017) Temporal order of disease pairs affects subsequent disease trajectories: The case of diabetes and sleep apnea. Pacific Symposium on Biocomputing. DOI: 10.1142/9789813207813_0036.

European Journal of Clinical Microbiology & Infectious Diseases Impact Factor: 2.727

Joensen, K. G. et al. (2017) Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease. European Journal of Clinical Microbiology & Infectious Diseases. DOI: 10.1007/s10096-017-2947-2.

Rasmussen L. H. et al. (2016) Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci. European Journal of Clinical Microbiology & Infectious Diseases. DOI: 10.1007/s10096-016-2700-2.

Current Pharmaceutical Design Impact Factor: 2.611

Orozco, A. A. et al. (2016) In silico systems pharmacology to assess drug's therapeutic and toxic effects. Current Pharmaceutical Design. DOI: 10.2174/1381612822666160907093215.

BMC Immunology Impact Factor: 2.485

Pedersen, C. C. et al. (2015) Impact of microRNA-130a on the neutrophil proteome. BMC Immunology. DOI: 10.1186/s12865-015-0134-8.

BMC Bioinformatics Impact Factor: 2.448

Al-Nakeeb, K. et al. (2017) Norgal: Extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data. BMC Bioinformatics. DOI: 10.1186/s12859-017-1927-y.

Saputra, D. et al. (2015) Reads2Type: a web application for rapid microbial taxonomy identification. BMC Bioinformatics. DOI: 10.1186/s12859-015-0829-0.

International Journal of Genomics Impact Factor: 2.402

Rizzo, M. et al. (2017) The miRNA pull out assay as a method to validate the miR-28-5p targets identified in other tumor contexts in prostate cancer. International Journal of Genomics. DOI: 10.1155/2017/5214806.

Chemical Biology & Drug Design Impact Factor: 2.396

Lückmann, M. et al. (2017) Structure-based discovery of novel US28 small molecule ligands with different modes of action. Chemical Biology & Drug Design. DOI: 10.1111/cbdd.12848.

BMJ Open Impact Factor: 2.369

Jensen, A. B. et al. (2015) Long-term risk of cardiovascular and cerebrovascular disease after removal of the colonic microbiota by colectomy: a cohort study based on the Danish National Patient Register from 1996 to 2014. BMJ Open. DOI: 10.1136/bmjopen-2015-008702.

Physical Review E Impact Factor: 2.366 Svaneborg, C. et al. (2016) Multiscale approach to equilibrating model polymer melts. Physical Review E. DOI: 10.1103/PhysRevE.94.032502.

Journal of Sea Research Impact Factor: 2.350

Ulrich, C. et al. (2017) Variability and connectivity of plaice populations from the Eastern North Sea to the Baltic Sea, part II. Biological evidence of population mixing. Journal of Sea Research. DOI: 10.1016/j.seares.2016.11.002.

Pharmacogenomics Impact Factor: 2.350

Rasmussen, H. B. et al. (2015) Individualization of treatments with drugs metabolized by CES1: combining genetics and metabolomics. Pharmacogenomics. DOI: 10.2217/PGS.15.7.

Disease Markers Impact Factor: 2.348

Beaney, K. et al. (2017) Functional analysis of the coronary heart disease risk locus on chromosome 21q22. Disease Markers. DOI: 10.1155/2017/1096916.

Proteins: Structure, Functions & Bioinformatics Impact Factor: 2.289

Geertz-Hansen, H. M. et al. (2017) Protein features as determinants of wild-type glycoside hydrolase thermostability. Proteins: Structure, Functions & Bioinformatics. DOI: 10.1002/prot.25357.

Royal Society Open Science Impact Factor: 2.243

Sawafuji, R. et al. (2017) Proteomic profiling of archaeological human bone. Royal Society Open Science. DOI: 10.1098/rsos.161004.

PeerJ Impact Factor: 2.200

Palleja, A. et al. (2015) HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases. PeerJ. DOI: 10.7717/peerj.1057.

Santos, A. et al. (2015) Comprehensive comparison of large-scale tissue expression datasets. PeerJ. DOI: 10.7717/peerj.1054.

Journal of Statistical Mechanics- Theory and Experiment Impact Factor: 2.196 Codello, A. et al. (2015) Approximating the Ising model on fractal lattices of dimension less than two. Journal of Statistical Mechanics-Theory and Experiment. DOI:10.1088/1742-5468/2015/11/P11008.

Journal of Medical Microbiology Impact Factor: 2.159

Rasmussen, L. H. et al. (2017) In silico assessment of virulence factors in strains of Streptococcus oralis and Streptococcus mitis isolated from patients with Infective Endocarditis. Journal of Medical Microbiology. DOI: 10.1099/jmm.0.000573.

Microbial Pathogenesis Impact Factor: 2.009

Carkaci, D. et al. (2017) Genomic characterization, phylogenetic analysis, and identification of virulence factors in Aerococcus sanguinicola and Aerococcus urinae strains isolated from infection episodes. Microbial Pathogenesis. DOI: 10.1016/j.micpath.2017.09.042.

Toxicon Impact Factor: 1.927

Engmark, M. et al. (2017) High-density peptide microarray exploration of the antibody response in a rabbit immunized with a neurotoxic venom fraction. Toxicon. DOI: 10.1016/j.toxicon.2017.08.028.

Molecular Physics Impact Factor: 1.870 Nørby, M. S. et al. (2017) Assessing frequency-dependent site polarisabilities in linear response polarisable embedding. Molecular Physics. DOI: 10.1080/00268976.2016.1177667

Journal of Animal Science Impact Factor: 1.863

Oliveira Junior, G. A. et al. (2017) Genomic study and Medical Subject Headings enrichment analysis of early pregnancy rate and antral follicle numbers in Nelore heifers. Journal of Animal Science. DOI: 10.2527/jas2017.1752.

Journal of Biomedical Semantics Impact Factor: 1.845

Lin, Y. et al. (2017) Drug target ontology to classify and integrate drug discovery data. Journal of Biomedical Semantics. DOI: 10.1186/s13326-017-0161-x.

Mitochondrial DNA Part B Impact Factor: 1.760

Haddad, N. et al. (2017) Mitochondrial genome of the North African Sahara Honeybee, Apis mellifera sahariensis (Hymenoptera: Apidae). Mitochondrial DNA Part B. DOI: 10.1080/23802359.2017.1365647.

Haddad, N. J. et al. (2017) Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae). Mitochondrial DNA Part B. DOI: 10.1080/23802359.2017.1292480.

Annals of Human Genetics Impact Factor: 1.659

Tan, Q. et al. (2017) Disease-Concordant Twins Empower Genetic Association Studies. Annals of Human Genetics. DOI: 10.1111/ahg.12181.

Chen, M. et al. (2016) Differentially Methylated Genomic Regions in Birth-Weight Discordant Twin Pairs. Annals of Human Genetics. DOI: 10.1111/ahg.12146.

Frontiers in Molecular Biosciences Impact Factor: 1.330

Alvarez-Cabrera A. L. et al. (2017) Electron microscopy structural insights into CPAP oligomeric behavior: A plausible assembly process of a supramolecular scaffold of the centrosome. Frontiers in Molecular Biosciences. DOI: 10.3389/fmolb.2017.00017.

Nygaard, M. et al. (2016) The mutational landscape of the oncogenic MZF1 SCAN domain in cancer. Frontiers in Molecular Biosciences. DOI: 10.3389/fmolb.2016.00078.

Artificial Life Impact Factor: 1.316 Faíña, A. et al. (2017) Automating the Incremental Evolution of Controllers for Physical Robots. Artificial Life. DOI: 10.1162/ARTL_a_00226.

European Physical Journal D Impact Factor: 1.288 Jepsen, K. A. et al. (2017) On binding specificity of (6–4) photolyase to a T(6–4)T DNA photoproduct. European Physical Journal D. DOI: 10.1140/epjd/e2017-70818-2.

Sushko, G. B. et al. (2016) Studying chemical reactions in biological systems with MBN Explorer: Implementation of molecular mechanics with dynamical topology. European Physical Journal D. DOI: 10.1140/epjd/e2015-60424-9. Sushko, G. B. et al. (2016) Molecular dynamics for irradiation driven chemistry: application to the FEBID process. European Physical Journal D. DOI: 10.1140/epjd/e2016-70283-5.

Congenitial Heart Disease Impact Factor: 1.278

Ellesøe, S. G. et al. (2016) Familial Atrial Septal Defect and Sudden Cardiac Death: Identification of a Novel NKX2-5 Mutation and a Review of the Literature. Congenitial Heart Disease. DOI: 10.1111/chd.12317.

Genome Announcements Impact Factor: 1.180

Thrane, U. et al. (2017) Genome Sequence of Talaromyces atroroseus, Which Produces Red Colorants for the Food Industry. Genome Announcements. DOI: 10.1128/genomeA.01736-16.

Advanced Robotics Impact Factor: 0.920

Liu, C. et al. (2017) The impact of module morphologies on modular robots. Advanced Robotics. DOI: 10.1109/ICAR.2017.8023524.

PoS LATTICE Impact Factor: 0.900

Drach, V. et al. (2017) The scalar sector of $SU(2)$ gauge theory with $N_F=2$ fundamental flavours. PoS LATTICE2016 (2017). DOI: http://inspirehep.net/record/1589533/.

Bussone, A. et al. (2016) A simple method to optimize HMC performance. PoS LATTICE2016 (2016). DOI: arXiv:1610.02860 [hep-lat].

Janowski, T. et al. (2016) Rho meson decay width in SU(2) gauge theories with 2 fundamental flavours. PoS LATTICE2016 (2016). DOI: arXiv:1611.09195 [hep-lat].

Rantaharju, J. et al. (2016) Adjoint SU(2) with Four Fermion Interactions. PoS LATTICE2016 (2016). DOI: arXiv:1610.10074 [hep-lat].

Drach, V. et al. (2016) Conformal symmetry vs. chiral symmetry breaking in the SU(3) sextet model. PoS LATTICE2015 (2016). DOI: arXiv:1508.04213 [hep-lat].

Drach, V. et al. (2016) Template Composite Dark Matter: $SU(2)$ gauge theory with 2 fundamental flavours. PoS LATTICE2015 (2016). DOI: arXiv:1511.04370 [hep-lat].

Rantaharju, J. et al. (2016) Wilson Fermions with Four Fermion Interactions. PoS LATTICE2015 (2016). DOI: arXiv:1511.03899 [hep-lat].

Acta Crystallographica Section F: Structural Biology Communications Impact Factor: 0.799

Alcón P. et al. (2017) Assembly of Francisella novicida Cpf1 endonuclease in complex with guide RNA and target DNA. Acta Crystallographica Section F: Structural Biology Communications. DOI: 10.1107/S2053230X1700838X.

AMIA Annual Symposium Proceedings Impact Factor: 0.750

Weegar, R. et al. (2015) Finding Cervical Cancer Symptoms in Swedish Clinical Text using Machine Learning Approach and NegEx. AMIA Annual Symposium Proceedings. DOI: https://www.ncbi.nlm.nih.gov/pmc/ articles/PMC4765575/#.

EPJ Web Conference Impact Factor: 0.750

Pica, C. et al. (2017) Composite Higgs Dynamics on the Lattice. EPJ Web Conf. DOI: 10.1051/epjconf/ 201713710005.

Frontiers in Robotics and AI No Journal Impact Factor

Veenstra, F. et al. (2017) Toward Energy Autonomy in Heterogeneous Modular Plant-Inspired Robots through Artificial Evolution. Frontiers in Robotics and AI. DOI: 10.3389/frobt.2017.00043.

Laryngoscope Investigative Otolaryngology No Journal Impact Factor

Lonkvist, C. K. et al. (2017) Progressive resistance training in head and neck cancer patients undergoing concomitant chemoradiotherapy. Laryngoscope Investigative Otolaryngology. DOI: 10.1002/lio2.88.

Annals of Translational Medicine No Journal Impact Factor

Russo, F. Et al. (2016) The hunt for fatal myocardial infarction biomarkers: predictive circulating microRNAs. Annals of Translational Medicine. DOI: 10.21037/atm.2016.08.21.

Drug Metabolism and Personalized Therapy No Journal Impact Factor

Nzabonimpa, G. S. et al. (2016) Investigating the impact of missense mutation in hCES1 by in silico structure-based approaches. Drug Metabolism and Personalized Therapy. DOI: 10.1515/dmpt-2015-0034.

World Journal for Pediatric and Congenital Heart Surgery No Journal Impact Factor

Ellesøe, S. G. et al. (2016) How Suitable Are Registry Data for Recurrence Risk Calculations? Validation of Diagnoses on 1,593 Families With Congenital Heart Disease. World Journal for Pediatric and Congenital Heart Surgery. DOI: 10.1177/2150135115615786.

Journal of Research in Pharmacy Practice No Journal Impact Factor

Warrer, P. et al. (2015) Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines. Journal of Research in Pharmacy Practice. DOI: 10.4103/2279-042X.155753.