modeling chemotaxis, cell adhesion and cell sorting. examples with dictyostelium eirikur pálsson...

41
Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Post on 21-Dec-2015

220 views

Category:

Documents


2 download

TRANSCRIPT

Page 1: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Modeling Chemotaxis, Cell Adhesion and Cell Sorting.

Examples with Dictyostelium

Eirikur PálssonDept of Biology, Simon Fraser University

Page 2: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University
Page 3: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

•Throughout gastrulation and embryogenesis.

•In wound healing.

•Carcinoma cell invasion.

•Limb bud regeneration.

•Cell movement in Dictyostelium discoideum.

Examples of Processes Where Cell Movement Is Important:

Page 4: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Purpose of a Cell Movement model

• Visualization of cell movements in 3-D

• Understand how simple cell-cell interactions, signaling and adhesion lead to complex cell movements

• Simplification; Revealing the most important things

• Gives constraints. Suggests what behavior is possible

Page 5: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

•Introduction

•Design of Model

•Results

•Conclusions & Future Work

Outline

Page 6: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University
Page 7: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

•The basic unit of the model is an ellipsoidal cell

•Deformation of the cell depends on the history of the forces acting on it

•The cell conserves volume with variable ellipsoidal semi-axes

•The cell may adhere to other cells or to the substrate

•When the cell moves it sends out a pseudopod, attaches it to either a neighbor or the surface

•The cell responds to chemotactic signals

The Model.

Page 8: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

A Representation of the Deformability of Each Axis

dridt

=κ1(Fi −ff)μ1(κ1 +κ2)

+dFidt

(κ1 +κ2)−ri

κ1κ2

μ1(κ1 +κ2)

rarbrc =Vellipse=const

Page 9: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

di

dj

Page 10: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

rr new =

∇γ (ˆ I − 2exp(−10η (r v ran

r v ran ))) if γ > γ thres

r a (ˆ I − 2exp(−3η (

r v ran

r v ran ))) if γ ≤ γ thres

⎧ ⎨ ⎩

dr a

dt= β (1− u)(

r r new −

r a )

du

dt= k2(γ − γ bac )(1− u) − k3u

Rotation

Page 11: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

α =rcell

2(1di

+1dj

), x=(d

rcell

−b), b=mindist

r F =F

r r ijr r ij

Forces (static)

Page 12: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Force equations

r F i

stat=r F i( j /s)

act +r F ij

pass

j∈N(i )

∑ −r F ji

act

j∈N(i )

∑r F i

D =μsAis

A

r v i +μc

Aij

A(r v i

j∈N(i)

∑ −r v j )

r F i

stat=r F i

D =μs

Ais

Ar v i +μc

Aij

A(r v i

j∈N(i )

∑ −r v j)

Equation of motion

Page 13: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

•All the neighbor cells are found

•The chemical gradient around each cell is calculated

•The cells orient towards the chemical gradient and apply an active force in that direction

•All the forces acting on a cell are determined. These are of two types; The passive and the active forces

•The cells are moved and deformed according to the equations of motion

•The chemical concentration is updated.

Temporal Evolution of the Model

Page 14: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

R Foty 1996

Page 15: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University
Page 16: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Distance btwPlates

Surface Tension(dyne/cm)

Force(nN)

4.5 23 ± 2 575 ± 30

5.0 26 ± 2 440 ± 15

5.5 26 ± 2 340 ± 20

Page 17: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Sorting

Eaa ,Ebb > Eab

Eab > Eaa, Ebb

Ebb > Eab >Eaa

Separation

Random

Page 18: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Limb Bud

Pigm. Epith.

Heart

Liver

N. Retina

Green

Red

Yellow

Blue

Orange

AdhesionColorType

20.1

12.6

8.5

4.6

1.6R Foty 1996

Page 19: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aPhoto decompressor

are needed to see this picture.

QuickTime™ and aPhoto decompressor

are needed to see this picture.

Page 20: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Sor

ting

Time

Sor

ting

Time

Sorting: With or Without Random Cell Movement

Sorting: Changing Cell Stiffness and Adhesion

Normal Cell

Stiffer Cell

Stiffer and more Adhesive Cell

Not Random

Random Motion

Page 21: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Sorting of Pre-spore and Pre-Stalk Cells

Takeuchi 1986

Page 22: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aPhoto decompressor

are needed to see this picture.

Sorting due to specific Cell Adhesion

Page 23: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Dictyostelium discoideum Life Cycle

Page 24: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Camp Waves During Aggregation

1 mmK Lee Princeton U

Page 25: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aSorenson Video decompressorare needed to see this picture.

Aggregation (Firtel)

Page 26: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aMPEG-4 Video decompressorare needed to see this picture.

Page 27: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Simulations of Dictyostelium discoideum Aggregation in Response to cAMP signals.

Page 28: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aPhoto decompressor

are needed to see this picture.

Aggregation. Pacemaker Cells in Red

Page 29: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aMPEG-4 Video decompressorare needed to see this picture.

Aggregation. 1 to 1 Pacemaker Cells in Red

Page 30: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aMPEG-4 Video decompressorare needed to see this picture.

Aggregation,1-1. Reduced Diffusion

Page 31: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Bonner 1999

Page 32: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Simulations of 2-D slugs The Red Cells in the front

are cAMP Pacemakers

Page 33: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aVideo decompressor

are needed to see this picture.

Slug with cAMP wave

Page 34: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aPhoto decompressor

are needed to see this picture.

Slug moving straight, Pacemaker graft

Page 35: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Cell Sorting.The Chemotactic force is 50 %

Larger in the Grey Cells

Page 36: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aVideo decompressor

are needed to see this picture.

Slug with 2 different Cell types, same adhesion

Page 37: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aVideo decompressor

are needed to see this picture.

Slug with 2 different cell types, specific cell adhesionGrey cells more adhesive than green

Page 38: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aVideo decompressor

are needed to see this picture.

Thicker Slug with 2 different cell types, specific cell adhesionGrey cells more adhesive than green

Page 39: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

QuickTime™ and aVideo decompressor

are needed to see this picture.

Thicker Slug with 2 different cell types, specific cell adhesionGrey cells more adhesive than green (Cross section)

Page 40: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

Conclusions

•The model reproduces well the observed behavior and properties of cell aggregates

•The chemotactic movement of cells in response to a cAMP wave are in qualitative agreement with experiments

New Findings

•Random movement, cell stiffness and cell adhesion affect the rate of cell sorting

•Cell specific adhesion enhances chemotactic sorting and may be necessary to achieve cell sorting in a timely manner

Page 41: Modeling Chemotaxis, Cell Adhesion and Cell Sorting. Examples with Dictyostelium Eirikur Pálsson Dept of Biology, Simon Fraser University

dridt

=κ1(Fi −ff)μ1(κ1 +κ2)

+dFidt

(κ1 +κ2)−ri

κ1κ2

μ1(κ1 +κ2)