model and data hierarchies for simulating and understanding climate marco a. giorgetta demands on...

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Numerical consistency between continuity and transport equation

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Model and Data Hierarchies for Simulating and Understanding Climate Marco A. Giorgetta Demands on next generation dynamical solvers (My) wish list for the dynamical solver Conserves mass, tracer mass (and energy) Numerical consistency between continuity and transport equation Well behaved dynamics Low numerical noise Low numerical diffusion Physically reasonable dispersion relationship Accurate Grid refinements (of different kinds) Fast Numerical consistency between continuity and transport equation Example: ECHAM A spectral transform dynamical core solving for: Relative vorticity Divergence Temperature Log(surface pressure) using 3 time level leap frog time integration scheme A hybrid eta vertical coordinate: Pressure at interface between layers:p(k,t) = a x p(t) + b Mass of air in a layer x g:dp(k,t) = p(k+1,t) - p i (k,t) A flux form transport scheme q, cloud water, cloud ice, (and tracers for chemistry or aerosols using a 2 time level scheme PROBLEM: tracer mass not conserved Illustration: ICON dynamical core + transport scheme Triangular grid Hydrostatic dynamics Hybrid vertical eta coordinate 2 time level semi-implicit time stepping Flux form semi-Lagrangian transport scheme Jablonowski-Williamson test Initial state = zonally symmetric, but dynamically instable flow Initial perturbation Baroclinic wave develops over ~10 days 4 Tracers, of which Q4(x,y,z,t=0) = 1 Daniel Reinert, DWD Grid refinements (of different kinds) Options/Questions Grid refinement static or dynamic/adaptive? Re-distribute grid points or create/destroy grid points? 2d or 3d? Boundary layer, troposphere, stratosphere, mesosphere Single time integration scheme or recursive schemes? Conservation properties? Dynamical core Adjust scheme to expected errors ( FE schemes) Parameterizations: Submodels: embedded dynamical models super-parameterizations Cost function How to predict the need for refinement, and what for? Target/goal? How to confine computational costs? Generating the icosahedral triangular grid Other kinds of grid refinements (A) Hexagon(B) re-distributing cells Refining the grid Grid refinement Refinement by bi-section of triangle edges: 1 triangle 4 triangles 1 or more refined regions 1 or more refinement levels per region Two-way nesting 1.Compute one time step on parent domain dX/dt 2.Interpolate the tendencies to the lateral boundary of the nested domain 3.Perform 2 time steps(*) on the nested domain 4.Feed back the increments (*)For more levels Apply recursion Numerical discontinuities! Leonidas Linardakis, MPI-M (B) global resolution 35 km (A) global resolution 140 km (C) global res. 140 km, regional res. 35 km Mountain induced Rossby wave Vorticity at ~ 3 km MSL after 20 days of simulation 2000-m circular mountain at 30N/90E Initial condition: Zonal flow with maximum speed of 20 m/s Experiments: (A) Global with 140 km resolution (B) Global with 35 km resolution (C) As (A), but 2-step refined circular region with resolution of (B) Gnther Zngl, DWD High Performance Computing How to get faster: Faster CPUs Faster connections between CPU, memory and disk faster Parallelization over more CPUs CPUs share memory CPUs have their own memory Modify code design to account for architecture of CPUs Scalar/vector CPUs Sizes of intermediate, fast access memories (Caches) The past was dominated by improved CPUs The future will be dominated by more CPUs Parallelzation Distribute the work to many CPUs Works well for local computations : cells, columns, (levels), Works badly for non-local task: integrals, global organization, Serial and parallel sections in a code On 1 CPU: On 4 CPUs: Amdahls law The serial fraction of work limits the speedup P =fraction of the work that can be parallelized 1-P = remainder, which cannot be parallelized S = 1/(1-P) = maximum speedup for N (Wikipedia) The serial fraction of work limits the maximum speedup! For illustration: Computer at DKRZ IBM Power6 CPUs 250 nodes 16 CPUs/node total = 4000 CPUs 2 cores/CPU total = 8000 cores 2 floating point units/core 64 parallel processes/node ECHAM GCM at ~1 resolution Scales well up to 20 nodes = 640 cores (with parallel I/O) Problem: Spectral transform method used for dynamical core Requires transformations between spherical harmonics and grid point fields global data exchange, transpositions. Future: ~10 5 cores New model necessary Strategies Select numerical scheme, which is Sufficiently accurate with respect to your problem Computationally efficient Fast on single CPUs Minimize global data exchange (Transformations, fixers, I/O) Find optimal way to distribute work Practical issues: Optimization the code for the main computer platform Account for strengths/weaknesses of available compilers Avoid tricks which will stop the code to work on other platforms Optimize first the most expensive parts Other problems in HPC Data storage: Disk capacities grow less than computing power Bandwidth between computer and storage system ESMs can produce HUGE amounts of data Finite lifetime of disks or tapes backups or re-computing? Data accessibility: Bandwidth between disks/tapes and post-processing computer Post-processing software must be parallelized Data description Documentation of model, experimental setup, formats etc. Climate models are no longer a driver for the HPC development END