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ORIGINAL ARTICLE Metabolite fingerprinting, pathway analyses, and bioactivity correlations for plant species belonging to the Cornaceae, Fabaceae, and Rosaceae families Su Young Son 1 Na Kyung Kim 1 Sunmin Lee 1 Digar Singh 1 Ga Ryun Kim 2 Jong Seok Lee 2 Hee-sun Yang 2 Joohong Yeo 2 Sarah Lee 2 Choong Hwan Lee 1 Received: 1 April 2016 / Accepted: 26 May 2016 Ó Springer-Verlag Berlin Heidelberg 2016 Abstract Key message A multi-parallel approach gauging the mass spectrometry-based metabolite fingerprinting coupled with bioactivity and pathway evaluations could serve as an efficacious tool for inferring plant taxo- nomic orders. Abstract Thirty-four species from three plant families, namely Cornaceae (7), Fabaceae (9), and Rosaceae (18) were subjected to metabolite profiling using gas chro- matography–time-of-flight-mass spectrometry (GC–TOF- MS) and ultrahigh performance liquid chromatography– linear trap quadrupole-ion trap-mass spectrometry (UHPLC–LTQ-IT-MS/MS), followed by multivariate analyses to determine the metabolites characteristic of these families. The partial least squares discriminant analysis (PLS-DA) revealed the distinct clustering pattern of metabolites for each family. The pathway analysis fur- ther highlighted the relatively higher proportions of flavo- nols and ellagitannins in the Cornaceae family than in the other two families. Higher levels of phenolic acids and flavan-3-ols were observed among species from the Rosa- ceae family, while amino acids, flavones, and isoflavones were more abundant among the Fabaceae family members. The antioxidant activities of plant extracts were measured using ABTS, DPPH, and FRAP assays, and indicated that extracts from the Rosaceae family had the highest activity, followed by those from Cornaceae and Fabaceae. The correlation map analysis positively links the proportional concentration of metabolites with their relative antioxidant activities, particularly in Cornaceae and Rosaceae. This work highlights the pre-eminence of the multi-parallel approach involving metabolite profiling and bioactivity evaluations coupled with metabolic pathways as an effi- cient methodology for the evaluation of plant phylogenies. Keywords Metabolite fingerprinting Pathways Bioactivity Plant families Mass spectrometry Introduction The diversity of plant species is governed by their geo- graphical distribution and climatic conditions (Qian 2002). The peninsular biome of Korea witnesses four distinct seasons in a year (Lee et al. 2002) and thus, hosts a rich ecological biodiversity harboring some of the exclusive plant species (Kim 2006). These numerous plant species are characterized by their prolific spectrum of natural products and metabolic plasticity in response to environ- mental parameters such as temperature, climate, and rain- fall (Rim et al. 2000; Pandey and Rizvi 2009; Sytar et al. 2015). Plants carry a huge assortment of metabolites with overwhelming applications in the vital areas of human welfare including health, pharmaceuticals, nutrition, and agriculture. Conspicuously, Cornus species (Family: Communicated by Y.-Il Park. Electronic supplementary material The online version of this article (doi:10.1007/s00299-016-2006-y) contains supplementary material, which is available to authorized users. & Sarah Lee [email protected] & Choong Hwan Lee [email protected] 1 Department of Bioscience and Biotechnology, Konkuk University, Seoul 05029, Korea 2 National Institute of Biological Resources, Environmental Research Complex, Inchon 22689, Korea 123 Plant Cell Rep DOI 10.1007/s00299-016-2006-y

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Page 1: Metabolite fingerprinting, pathway analyses, and … › NFUpload › nfupload_down.php?tmp_name...2015). Plants carry a huge assortment of metabolites with overwhelming applications

ORIGINAL ARTICLE

Metabolite fingerprinting, pathway analyses, and bioactivitycorrelations for plant species belonging to the Cornaceae,Fabaceae, and Rosaceae families

Su Young Son1 • Na Kyung Kim1• Sunmin Lee1 • Digar Singh1 • Ga Ryun Kim2

Jong Seok Lee2 • Hee-sun Yang2 • Joohong Yeo2 • Sarah Lee2 • Choong Hwan Lee1

Received: 1 April 2016 / Accepted: 26 May 2016

� Springer-Verlag Berlin Heidelberg 2016

Abstract

Key message A multi-parallel approach gauging the

mass spectrometry-based metabolite fingerprinting

coupled with bioactivity and pathway evaluations could

serve as an efficacious tool for inferring plant taxo-

nomic orders.

Abstract Thirty-four species from three plant families,

namely Cornaceae (7), Fabaceae (9), and Rosaceae (18)

were subjected to metabolite profiling using gas chro-

matography–time-of-flight-mass spectrometry (GC–TOF-

MS) and ultrahigh performance liquid chromatography–

linear trap quadrupole-ion trap-mass spectrometry

(UHPLC–LTQ-IT-MS/MS), followed by multivariate

analyses to determine the metabolites characteristic of

these families. The partial least squares discriminant

analysis (PLS-DA) revealed the distinct clustering pattern

of metabolites for each family. The pathway analysis fur-

ther highlighted the relatively higher proportions of flavo-

nols and ellagitannins in the Cornaceae family than in the

other two families. Higher levels of phenolic acids and

flavan-3-ols were observed among species from the Rosa-

ceae family, while amino acids, flavones, and isoflavones

were more abundant among the Fabaceae family members.

The antioxidant activities of plant extracts were measured

using ABTS, DPPH, and FRAP assays, and indicated that

extracts from the Rosaceae family had the highest activity,

followed by those from Cornaceae and Fabaceae. The

correlation map analysis positively links the proportional

concentration of metabolites with their relative antioxidant

activities, particularly in Cornaceae and Rosaceae. This

work highlights the pre-eminence of the multi-parallel

approach involving metabolite profiling and bioactivity

evaluations coupled with metabolic pathways as an effi-

cient methodology for the evaluation of plant phylogenies.

Keywords Metabolite fingerprinting � Pathways �Bioactivity � Plant families � Mass spectrometry

Introduction

The diversity of plant species is governed by their geo-

graphical distribution and climatic conditions (Qian 2002).

The peninsular biome of Korea witnesses four distinct

seasons in a year (Lee et al. 2002) and thus, hosts a rich

ecological biodiversity harboring some of the exclusive

plant species (Kim 2006). These numerous plant species

are characterized by their prolific spectrum of natural

products and metabolic plasticity in response to environ-

mental parameters such as temperature, climate, and rain-

fall (Rim et al. 2000; Pandey and Rizvi 2009; Sytar et al.

2015). Plants carry a huge assortment of metabolites with

overwhelming applications in the vital areas of human

welfare including health, pharmaceuticals, nutrition, and

agriculture. Conspicuously, Cornus species (Family:

Communicated by Y.-Il Park.

Electronic supplementary material The online version of thisarticle (doi:10.1007/s00299-016-2006-y) contains supplementarymaterial, which is available to authorized users.

& Sarah Lee

[email protected]

& Choong Hwan Lee

[email protected]

1 Department of Bioscience and Biotechnology, Konkuk

University, Seoul 05029, Korea

2 National Institute of Biological Resources, Environmental

Research Complex, Inchon 22689, Korea

123

Plant Cell Rep

DOI 10.1007/s00299-016-2006-y

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Cornaceae) are widely used in ornamental gardening due to

their autumn coloring, berry fruits, and timber suitable for

the manufacture of musical instruments (Seeram et al.

2002; Lee et al. 2014; Forman et al. 2015a). Besides these,

Cornaceae plant extracts have traditionally been used by

Asian populations for the treatment of various ailments,

including colds, flu, and diarrhea, owing to their recently

reported antioxidant, antimicrobial, anti-malarial, anti-di-

abetic, and anti-proliferative effects (Forman et al. 2015b).

The Fabaceae family, with over 18,000 known species

having uncustomary floral structures and abundant fruits, is

often harvested for grains, pasture, and agro-forestry use,

and they are an excellent source of health proteins, dietary

fibers, and various phytochemicals (Messina 1999; Graham

and Vance 2003). Moreover, metabolites from Fabaceae

plants reportedly have potential health benefits, including

anticancer, antimicrobial, anti-obesity, and anti-diabetic

effects (Gepts et al. 2005). The rose family (Rosaceae),

with over 100 genera and 3000 known species, further

represents a preeminent group among the flowering plants

including many ornamental and fleshy fruit-bearing spe-

cies. Rosaceae plant extracts have widely been used as

therapeutic agents in Asia (Ju et al. 2009), owing to their

spectrum of bioactive metabolites with antioxidant (Mon-

tazeri et al. 2011), estrogenic, and anti-proliferative activ-

ities (Kang et al. 2006).

Metabolomics, an interdisciplinary ‘‘omics’’, has been

increasingly used for global, unbiased, and both qualitative

and quantitative evaluations of different metabolomes

(Bundy et al. 2009). The untargeted or global metabo-

lomics aim for comprehensive evaluation of the widest

possible metabolic coverage of an organism without any

bias. Gas chromatography–mass spectrometry (GC–MS)

and Liquid chromatography–mass spectrometry (LC–MS)

are a few of the holistic methods for the arduous exami-

nation of different classes of plant metabolites (Arbona

et al. 2009; Wahyuni et al. 2013). These techniques have

recently been applied to evaluate untargeted metabolic

profiles from various plant species; however, these data are

rarely coupled with corresponding bioactivity assays and

associated metabolic pathways. Previous studies in our

laboratory have reported the chemotaxonomic characteri-

zation for six different plant families (Aceraceae, Betu-

laceae, Fagaceae, Rosaceae, Asteraceae, and Fabaceae)

from the Korean temperate climate, which signifies the

ecological relevance of metabolomics in plant phylogenies

(Lee et al. 2015).

In the present work, we describe the metabolite char-

acterization coupled with bioactivity assays and associated

pathways for 34 species of plants from three different

families. The families Rosaceae and Fabaceae were

included in the study based on the initial partial least

squares discriminant analyses (PLS-DA), and their relative

importance both in Korea and worldwide. The family

Cornaceae was also included in the investigation because

of its assortment of bioactive metabolites reported in our

previous works. In this study, we propose an integrated

high-throughput comprehensive methodology twining the

comparative metabolite fingerprinting with quantitative

estimations for bioactivity phenotypes and associated

metabolic pathways to correlate the plant taxon.

Materials and methods

Chemicals and reagents

High-performance liquid chromatography (HPLC)-grade

methanol, acetonitrile, water, and hexane were purchased

from Fisher Scientific (Pittsburgh, PA, USA). Gallic acid,

naringin, 6-hydroxy-2,5,7,8-tetramethylchroman-2-car-

boxylic acid (Trolox), methoxyamine hydrochloride, pyr-

idine, N-methyl-N-(trimethylsilyl) trifluoroacetamide

(MSTFA), 2,20-azino-bis(3-ethylbenzothiazoline-6-sul-fonic acid) diammonium salt (ABTS), 1,1-diphenyl-2-

picrylhydrazyl (DPPH), hydrogen chloride (HCl), 2,4,6-

Tris(2-pyridyl)-s-triazine (TPTZ), ferric chloride (FeCl3),

Folin and Ciocalteu’s phenol reagent, diethylene glycol,

formic acid, myricetin (purity, C96 %), epicatechin (pu-

rity, C98 %), quinic acid (analytical grade), 4-O-caf-

feoylquinic acid (purity, C98 %), rutin (purity, C94 %),

ellagic acid (purity, C95 %), quercitrin (analytical grade),

myricetin (purity, C96 %), genistein (purity, C98 %),

daidzein (purity, C98 %), formononetin (purity, C99 %),

luteolin (purity, C98 %), diosmetin (analytical grade),

acacetin (purity, C97 %), and the standard compounds

were purchased from Sigma-Aldrich (St. Louis, MO,

USA). All chemicals and solvents were of analytical grade.

Plant materials

Three plant families, Cornaceae, Fabaceae, and Rosaceae,

were investigated in this study. Detailed information about

the corresponding plant species with their zones and dates

of collections is listed in Table 1. The six samples of

Cornaceae, excluding Cornus macrophylla, were procured

from the Korea Plant Extract Bank (KPEB,

Chengcheongbuk-do, Korea) and the remainder of the 28

plant species (1 Cornaceae, 9 Fabaceae, and 18 Rosaceae)

were provided by the National Institute of Biological

Resources (NIBR, Incheon, Korea). All the plant samples

were indigenously collected from two megalopolises,

seven provinces, and one special self-governing province

of the Republic of Korea. The samples were extracted

immediately and stored under deep-freeze conditions

(-80 �C) until procurement. Plant samples at the KPEB

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and NIBR were extracted following the procedure descri-

bed below. The procured plant samples included the extract

from aerial above-ground parts.

Sample preparation

The plant samples from KPEB were subjected to ultrasonic

(SDN-900H, SD Ultrasonic Cleaner, Seoul, Republic of

Korea) extraction with 99.9 % methyl alcohol for 3 days.

The extraction procedure was performed at the KPEB

facilities using standard operating protocols (15 min

ultrasonic pulse followed by 2 h stand by, at the rate of ten

times per day). Samples from NIBR were first dried under

shade and each sample (100 mg) was extracted thrice with

70 % ethanol (1 L). The plant extracts were then concen-

trated using a rotary evaporator (N-1000SWD, Eyela,

Tokyo, Japan) at 45 �C for 24 h, and filtered.

The extracted samples were derivatized for gas chro-

matography–time-of-flight-mass spectrometry (GC–TOF-

MS) analyses through oximation and silylation steps. First,

the concentrated extracts were oximated with 50 lL of

methoxyamine hydrochloride (20 mg/mL) in pyridine at

30 �C for 90 min. Subsequently, the samples were silylated

with 50 lL of MSTFA at 37 �C for 30 min. For ultrahigh

Table 1 Samples used in this study

No. Family Genus Species Collection areas in Korea Collection date

1 Cornaceae Aucuba japonica Naesujeon, Ulleung-eup, Ulleung-gun, Gyeongsangbuk-do 2000-10-10

2 Cornus alba Oksan-ri, Baegam-myeon, Cheoin-gu, Yongin-si, Gyeonggi-do 2001-04-19

3 Cornus controversa Oksan-ri, Baegam-myeon, Cheoin-gu, Yongin-si, Gyeonggi-do 2001-03-11

4 Cornus kousa Oksan-ri, Baegam-myeon, Cheoin-gu, Yongin-si, Gyeonggi-do 2001-06-08

5 Cornus macrophylla Jeodong-ri, Ulleung-eup, Ulleung-gun, Gyeongsangbuk-do 2014-07-16

6 Cornus officinalis Gisan-ri, Gwangtan-myeon, Paju-si, Gyeonggi-do 2007-07-20

7 Cornus walteri Pyeonghwal-ri, Samsan-myeon, Haenam-gun, Jeollanam-do 2001-05-17

8 Rosaceae Chaenomeles sinensis Ojeong-dong, Daedeok-gu, Daejeon 2014-08-10

9 Crataegus pinnatifida Gurae-ri, Sangdong-eup, Yeongwol-gun, Gangwon-do 2014-08-30

10 Eriobotrya japonica Jiro-ri, Byeongyeong-myeon, Gangjin-gun, Jeollanam-do 2014-08-13

11 Pourthiaea villosa Seonheul-ri, Jocheon-eup, Jeju-si, Jeju special self-governing province 2014-08-24

12 Prunus armeniaca Ojeong-dong, Daedeok-gu, Daejeon 2014-07-20

13 Prunus yedoensis Janghyeon-ri, Cheongna-myeon, Boryeong-si, Chungcheongnam-do 2014-08-07

14 Prunus maackii Gurae-ri, Sangdong-eup, Yeongwol-gun, Gangwon-do 2014-08-30

15 Prunus padus Gohan-ri, Gohan-eup, Jeongseon-gun, Gangwon-do 2014-05-22

16 Prunus sp. Gomo-ri, Soheul-eup, Pocheon-si, Gyeonggi-do 2014-08-08

17 Pyrus ussuriensis Icheon-ri, Sangbuk-myeon, Ulju-gun, Ulsan 2014-08-01

18 Rosa multiflora Nadae-ri, Yaro-myeon, Hapcheon-gun, Gyeongsangnam-do 2014-08-21

19 Rubus coreanus Sogye-ri, Hwanggan-myeon, Yeongdong-gun, Chungcheongbuk-do 2014-08-14

20 Rubus crataegifolius Nadae-ri, Yaro-myeon, Hapcheon-gun, Gyeongsangnam-do 2014-08-21

21 Rubus phoenicolasius Nadae-ri, Yaro-myeon, Hapcheon-gun, Gyeongsangnam-do 2014-08-21

22 Sanguisorba officinalis Nadae-ri, Yaro-myeon, Hapcheon-gun, Gyeongsangnam-do 2014-08-21

23 Sorbus commixta Jeodong-ri, Ulleung-eup, Ulleung-gun, Gyeongsangbuk-do 2014-07-16

24 Spiraea prunifolia Ungyo-ri, Bangnim-myeon, Pyeongchang-gun, Gangwon-do 2014-08-08

25 Spiraea salicifolia Ungyo-ri, Bangnim-myeon, Pyeongchang-gun, Gangwon-do 2014-08-08

26 Fabaceae Albizia julibrissin Daechi-ri, Daechi-myeon, Cheongyang-gun, Chungcheongnam-do 2014-08-06

27 Desmodium caudatum Seonheul-ri, Jocheon-eup, Jeju-si, Jeju special self-governing province 2014-08-24

28 Lespedeza bicolor Sin-ri, Goryeong-eup, Goryeong-gun, Gyeongsangbuk-do 2014-07-23

29 Lespedeza cuneata Geogi-ri, Jusang-myeon, Geochang-gun, Gyeongsangnam-do 2014-08-22

30 Lespedeza maximowiczii Gohan-ri, Gohan-eup, Jeongseon-gun, Gangwon-do 2014-08-30

31 Pueraria lobata Mamyeong-ri, Naechon-myeon, Pocheon-si, Gyeonggi-do 2014-08-04

32 Robinia pseudoacacia Sin-ri, Goryeong-eup, Goryeong-gun, Gyeongsangbuk-do 2014-10-23

33 Sophora flavescens Hanggok-ri, Gunbuk-myeon, Okcheon-gun, Chungcheongbuk-do 2014-08-18

34 Sophora japonica Geogi-ri, Jusang-myeon, Geochang-gun, Gyeongsangnam-do 2014-08-22

Plant Cell Rep

123

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performance liquid chromatography–LTQ XL-linear-ion

trap-mass spectrometry/mass spectrometry (UHPLC–LTQ

XL-IT-MS/MS) and ultra-performance liquid chromatog-

raphy–quadrupole-time-of-flight-mass spectrometry

(UPLC–Q-TOF-MS) analyses, 20 mg/mL (w/v) ethanol

(70 %) suspensions of the samples were filtered using a

0.2 lm PTFE membrane.

Primary metabolite analysis using GC–TOF-MS

The primary metabolites were analyzed on a GC–TOF-MS

system using an Agilent 7890A GC system (Palo Alto, CA)

equipped with an Agilent 7693 auto-sampler and TOF

Pegasus III mass spectrometer (Leco, St. Joseph, MI,

USA). An Rtx-5MS column (30 m length 9 0.25 mm

i.d. 9 0.25 m film thickness, J & W Scientific, Folsom,

CA, USA) was employed with helium as the carrier gas at a

constant flow rate of 1.5 mL/min. Injector and transfer line

temperatures were set at 250 and 240 �C, respectively. TheGC oven temperature was programmed at 75 �C for 2 min

with a 3-min hold time and the ramping of 15 �C/min to

300 �C as the final temperature. The mass acquisition rate

was set at 10 scans/s for a scan range of 45–1000 m/z with

70 eV of ionization energy in EI mode, and 1 lL of the

derivatized sample was placed in an auto-sampler and

injected with a split ratio of 20:1.

Secondary metabolite analysis using UHPLC–LTQ

XL-MS/MS and UPLC–Q-TOF-MS

The secondary metabolite analysis was performed on

UHPLC–LTQXL-MS/MS using the LTQXL-ion trap-mass

spectrometer equipped with an electrospray interface

(Thermo Fisher Scientific, San Jose, CA) coupled with

DIONEX UltiMate 3000 RS Pump, RS Autosampler, RS

Column Compartment, and RS Diode Array Detector (Dio-

nex Corporation, Sunnyvale, USA). The samples were sep-

arated on a Thermo Scientific Syncronis C18 UHPLC

column with a 1.7 lm particle size. The mobile phase con-

sisted of 0.1 % formic acid in water (solvent A) and 0.1 %

formic acid in acetonitrile (solvent B), with the gradient flow

program as follows: the initial solvent conditionwas 10 %of

solvent B; the gradient was then gradually increased from

10 % solvent B to 100 % solvent B over 18 min. Following

this, solvent B was decreased to 10 % and maintained for

22 min. The flow rate was maintained at 0.3 mL/min with

10 lL of the injection volume. The photodiode array

detector was set at a wavelength range of 200–600 nm and

managed by 3D field. Mass spectra were obtained by elec-

trospray ionization in negative ion mode within a mass range

of 150–1000 m/z. The operating parameters used were as

follows: source voltage, ±5 kV; capillary voltage, 39 V;

capillary temperature, 275 �C. Tandem MS analysis was

performed by scan-type turbo data-dependent scanning

under the conditions used for negative-mode MS scanning.

UPLC–Q-TOF-MS analysis was performed on a Waters

Micromass QTOF Premier using a UPLC ACQUITY sys-

tem (Waters, Milford, MA) equipped with a binary solvent

delivery apparatus, an auto-sampler, and an ultraviolet

(UV) detector. The column selected was an ACQUITY

UPLCBEH C18 column (100 mm 9 2.1 mm 9 1.7 lmparticle size, Waters Corp.). The operation parameters were

set as follows: injection volume, 5 lL; flow rate, 0.3 mL/

min; column temperature, 37 �C. The mobile phase con-

sisted of 0.1 % formic acid in water (A) and 0.1 % formic

acid in acetonitrile (B). The gradient program was set as

follows: 5 % solvent B was maintained initially for 1 min

followed by a gradual increase to 100 % over 9 min, and

then maintained at 100 % B for 1 min, with a subsequent

decrease to 5 % over 3 min. The total runtime was 13 min.

The MS data were collected in the range of 100–1000 m/z

using Waters Q-TOF Premier system (Micromass MS

Technologies, Manchester, UK) under negative- and posi-

tive-ion modes. The capillary voltage and cone voltage

were set at 2.5 kV and 50 V, respectively. The source

temperature was set at 100 �C, with the desolvation gas

(nitrogen) and cone gas (nitrogen) flow rates tuned to 600

and 50 L/h, respectively.

Data processing and statistical analysis

The GC–TOF-MS data acquisition files were converted

into netCDF (*.cdf) format using ChromaTOF software

(LECO Corporation). The parameters were adjusted as

follows: the baseline offset was tuned below 0.5, while the

average data points were set to auto with an average peak

width of 2. The UHPLC–LTQ-IT-MS/MS data were

acquired with Xcalibur software (version 2.00, Thermo

Fisher Scientific), and raw data were subsequently con-

verted to netCDF (*.cdf) format using Xcalibur software.

The MS data files were then processed using MetAlign

software (RIKILT-Institute of Food Safety, Wageningen,

The Netherlands) to evaluate the retention times, normal-

ized peak intensities, and accurate masses. The resulting

data were exported to Excel files (Microsoft, Redmond,

WA, USA), and multivariate statistical analyses were

performed using SIMCA-P? software (version 12.0,

Umetrics, Umea, Sweden). Principal component analysis

(PCA) and the loading plots were employed to compare

different metabolites among the three plant families (Cor-

naceae, Fabaceae, and Rosaceae). The variable importance

in the projection (VIP) value and analysis of variance

(ANOVA) methods was used for the tentative evaluation of

significantly different metabolites identified from both

GC–TOF-MS (at VIP[1.0, p\ 0.05) and UHPLC–LTQ-

IT-MS/MS (at VIP[0.7, p\ 0.05) analyses. PASW

Plant Cell Rep

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Statistics (version 18.0, SPSS, Inc., Chicago, IL) was used

to test differences in antioxidant activities, total phenolic

content (TPC), and total flavonoid content (TFC) by

Duncan’s multiple-range test, and to calculate Pearson’s

correlation coefficient between metabolites and the corre-

sponding antioxidant activities. The correlation between

metabolites and antioxidant activities was visualized with

correlation maps using MEV software version 4.8.

Determination of antioxidant activities by ABTS,

DPPH, and FRAP assays

The method described by Re et al. (1999) was used with

some modifications to perform ABTS assay. Briefly, 7 mM

ABTS was dissolved in 2.45 mM potassium persulfate

solution, and the mixture was stored for 12 h in the dark at

room temperature. The solution was diluted with deionized

water until the absorbance reached 0.7 ± 0.02 at 750 nm

using a microplate reader (Spectronic Genesys 6, Thermo

Electron, Madison, WI, USA). Each of the three plant

family sample extracts (10 lL) was mixed with 190 lL of

diluted ABTS solution in 96-well plate, and was incubated

at 37 �C in the dark for 6 min. Following the incubation,

the absorbance was recorded for the reacted samples at

750 nm using a microplate reader.

The DPPH assay was performed using the methods

described by Dietz et al. (2005) with few modifications.

The plant extracts (20 lL) from each of the species from

the three families were added to 0.2 mM DPPH ethanol

solution (180 lL) in a 96-well plate, and incubated for

20 min in the dark at room temperature. The absorbance

was recorded at 515 nm using a microplate reader.

The FRAP assay was performed using the modified

procedure formerly described by Prieto et al. (1999). The

FRAP reagent was mixed with 300 mM sodium acetate

buffer (pH 3.6), 10 mM TPTZ, and 20 mM ferric chloride

at a ratio of 10:1:1. Every plant sample (10 lL) was mixed

with 300 lL of FRAP reagent in a 96-well plate and

incubated in the dark at 37 �C for 6 min. The absorbance at

593 nm was then measured.

All the activity assays were conducted in triplicates and

the results are presented as the Trolox equivalent antioxi-

dant capacity, with a concentration range of 0.0156–1 mM.

The activity assays were performed for all of the plant

samples earlier subjected to mass spectrometry analysis.

Determination of total phenolic and flavonoid

contents

TPCs were determined using the method described by

Singleton et al. (1999) with some modifications. The

sample extracts (10 lL) from each of the three plant

families were mixed with 100 lL 0.2 N Folin and Cio-

calteu’s phenol reagent in 96-well plates. After 6 min of

reaction in the dark, 80 lL of 7.5 % Na2CO3 solution (in

distilled water) was added to the mixture, which was then

incubated for 60 min at room temperature. The absorbance

was measured at 750 nm using a microplate reader. The

results are presented as the gallic acid equivalent concen-

tration, with the concentration range of 31.25–500 ppm.

TFCs were determined following the method described

by Singleton et al. (1999) with some modifications. The

plant sample extracts (20 lL) were mixed with 20 lL of

NaOH, and 180 lL of 90 % diethylene glycol (in distilled

water) in a 96-well plate, and incubated for 60 min at room

temperature, followed by absorbance measurement at

405 nm using a microplate reader. The results are expres-

sed as the naringin equivalent concentration, with the

concentration range varying from 15.625 to 200 ppm. All

the assays were carried out in triplicates.

Quantification of selected nine metabolites

from Cornaceae, Fabaceae, and Rosaceae

The standard compounds were obtained for specifically

identified compounds, namely epicatechin (28), quercitrin

(41), luteolin (48), luteolin 4-methyl ether (49), apigenin

4-methyl ether (50), daidzein (51), genistein (52), caf-

feoylquinic acid (55), and ellagic acid (58) from three plant

families (Cornaceae, Fabaceae, and Rosaceae). The com-

pound standards were diluted as follows: 0.004 mg/mL for

genistein (52); 0.05 mg/mL for daidzein (51) and luteolin

(48); 0.15 mg/mL for epicatechin (28), luteolin 4-methyl

ether (49), apigenin 4-methyl ether (50), and 4-O-caf-

foylquinic acid (55); 0.2 mg/mL for quercitrin (41) and

ellagic acid (58) in microcentrifuge tubes (2 mL). The

compound stocks were serially diluted to the required

concentrations. The series concentrations for the standard

compounds were prepared to formulate the standard curve

and the corresponding regression equation in UHPLC–

LTQ-IT-MS/MS operations.

Results and discussion

Metabolite fingerprinting has emerged as an efficacious

discipline in modern metabolomics that enables researchers

to gain a comprehensive insight into the complex metabolic

relatedness and distinction among the different plant hier-

archies. In general, metabolic profiling could be extended

and interpreted to complement traditional methods of plant

phylogenies.

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Metabolite fingerprinting for plant species

from three different families (Cornaceae, Fabaceae,

and Rosaceae)

Thirty-four native Korean plant species were selected for

metabolite analyses using GC–TOF-MS and UHPLC–

LTQ-IT-MS/MS to discriminate different metabolites

among the three Families (Cornaceae, Fabaceae, and

Rosaceae). The species-specific metabolites were evaluated

using multivariate analyses including the supervised partial

least squares discrimination analysis (PLS-DA) as well as

the unsupervised principle component analysis (PCA). The

PLS-DA score plot for GC–TOF-MS data showed the

distinguished primary metabolite patterns among each of

the plant families by PLS1 (12.9 %) and PLS2 (7.0 %),

respectively (Fig. 1a). The quality parameters for PLS-DA

were signified using R2X, R2Y, and Q2. The fractions of the

sum of squares towards the selected components were

represented by R2X and R2Y values of 0.301 and 0.988,

respectively. The Q2 value of 0.868 further signifies the

fraction of the total variation for the X and Y components.

The PCA score plot also resulted in a pattern similar to the

PLS-DA (Fig. S1). The discriminated metabolites among

Cornaceae, Fabaceae, and Rosaceae were selected with

variable importance in the projection value (VIP[1.0) and

p value (p\ 0.05). The selected metabolites were subse-

quently identified using the standard compounds followed

by the comparison of resulting mass fragmentation patterns

with the NIST library. A total of 34 metabolites were

characterized and divided into broad sub-groups such as

organic acids (3), amino acids (11), sugars and sugar

alcohols (13), others (epicatechin and myricetin), and non-

identified (5) compounds (Table S1).

The PLS-DA score plot for secondary metabolites ana-

lyzed through UHPLC–LTQ-IT-MS/MS in negative ion

mode exhibits a similar pattern of distinct metabolic enti-

ties (Fig. 1b). PLS-DA analysis showed 13.2 % of total

variability. Cornaceae, Rosaceae, and Fabaceae were

clearly separated by PLS1 (6.8 %) and PLS2 (6.4 %), with

R2X (0.195), R2Y (0.997), and Q2 (0.822). A total of 46

different secondary metabolites were recognized as being

considerably different among the three plant families

depending upon the variable importance in the projection

(VIP[0.7) and p value (p\ 0.05). These metabolites were

tentatively identified based on various parameters, viz.,

retention time, mass spectra, MSn fragment, kmax, ele-

mental compositions, DmDa, and i-Fit data derived from

the UHPLC–LTQ-IT-MS/MS and UPLC–Q-TOF-MS

spectra for standard compounds and through the published

references (Table S2). A total of 46 different metabolites

were identified including flavonols (11), flavones (5), iso-

flavones (3), phenolic acids (3), ellagitannins (2), flavan-3-

ols (1), mannitol, di-O-galloyl-glucose, lespecyrtin D1,

hydroxyl-octadecatrienoic acids, and 17 non-identified

Fig. 1 Partial least-square discriminant analysis (PLS-DA) score plot

results derived from a GC–TOF-MS and b UHPLC–LTQ-IT-MS/MS

data of the three plant families. Each of the plant families are

symbolized as follows: red triangle Cornaceae, blue triangle

Rosaceae, and green triangle Fabaceae (color figure online)

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compounds. Intriguingly, the multivariate analyses results

exhibited the clear clustering among the different plant

family members irrespective of their varying periods of

storage (Fig. 1, Fig. 1S). Hence, it can further be inferred

that plant extract when maintain under deep-freeze condi-

tions (-80 �C) can be utilized for metabolomics analysis

even after extended periods of storage.

Discriminative metabolites from the three plant families

were indicated using the loading plots derived from PLS-

DA datasets (Fig. 2a) coupled with the class representation

for primary chemical structures (Fig. 2b). The identified

secondary metabolites were sorted into six classes of

phenolic compounds that were further categorized for

Cornaceae, Fabaceae, and Rosaceae plant families. The

loading plot indicated that flavonols (kaempferol deriva-

tives, quercetin derivatives, myricetin, and myricetin

derivatives) and ellagitannins (tellimagrandin II and ellagic

acid) were specifically related to the Cornaceae family. In

agreement with our results, similar classes of metabolites

have been reported in the leaves and fruits of Cornus mas

and the sarcocarp of C. officinalis (Cao et al. 2011;

Badalica-Petrescu et al. 2014). Moreover, the ellagic and

iridoid compounds have been detected in the roots of C.

capitata (Tanaka et al. 2001). Our study further correlates

phenolic acids (quinic acid derivatives) and flavan-3-ol

(epicatechin and cinchonain I) specifically to the Rosaceae,

confirming earlier reports where quinic acids derivatives

were identified in the fruits of Prunus domestica and in the

leaves of Crataegus species (C. laevigata, C. monogyna, C.

nigra, and C. pentagyna) (Cadiz-Gurrea et al. 2014;

Kuczkowiak et al. 2014). The present investigation indi-

cated the presence of epicatechin and cinchonain I in the

leaves of Eriobotrya japonica, as reported previously by

Qa’dan et al. (2009). The flavones (apigenin derivatives,

luteolin, and luteolin derivatives) and isoflavones (daid-

zein, genistein, and formononetin) were detected in

Fig. 2 A Loading plots (PLS-DA) for Cornaceae, Fabaceae, and

Rosaceae samples analyzed using UHPLC–LTQ-IT-MS/MS. Each of

the three plant families are symbolized as follows: red triangle

Cornaceae, blue triangle Rosaceae, and green triangle Fabaceae.

B The classes of compounds: a flavonols, b ellagitannins, c phenolic

acids, d flavan-3-ols, e flavones, and f isoflavones detected in the three

plant families (color figure online)

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relatively higher concentrations in Fabaceae than in the

other two families. Flavones and isoflavones were also

reported from Bauhinia L. species, Genista tinctoria and

Lespedeza maximowiczii (also included in present study),

thus validating our results (Tuczkiewica et al. 2004; Veitch

2013; Farag et al. 2015; Kim et al. 2015). In general, the

present work indicates that Cornaceae, Fabaceae, and

Rosaceae show clear metabolite groupings as indicated

through the multivariate statistical analyses. Furthermore,

the identified metabolites from each of the families could

be distinguished into different classes of phenolic deriva-

tives. The classified metabolites, such as ellagitannins,

flavonols, phenolic acids flavan-3-ols, flavones, and iso-

flavones were correlated specifically to their corresponding

families.

Metabolic pathway correlations and the relative

contents of the discriminant metabolites in the three

plant families

The final selected primary and secondary metabolites were

linked to the corresponding metabolic pathways to evaluate

their relative contents among the three plant families

(Fig. 3). In the case of the primary metabolites, shikimic

acid (2), gallic acid (3), arabinose (16), fructose (21),

glucose (22), and myo-inositol (25) were relatively higher

in Cornaceae than in Fabaceae and Rosaceae. The fruits of

C. mas have been reported as containing significant pro-

portions of organic acids (4.6–7.4 %) and gallic acid was

identified (Deng et al. 2013). Gallic acid is a known pre-

cursor of hydrolysable tannin, which is synthesized from an

intermediate precursor named dehydroshikimic acid (Os-

sipov et al. 2003). Shikimic acid found in C. stolonifera

Michx is an essential intermediate compound for the

biosynthesis of aromatic amino acids, viz., phenylalanine,

tyrosine, and tryptophan, and has pharmaceutical signifi-

cance (Li et al. 1966; Jung et al. 2011). The highest con-

centrations of glucose and fructose derived from the stems

of C. sericea L. were detected in highest concentration

during fall after cold acclimation (Ashworth et al. 1993).

The family of specific amino acids (valine, isoleucine,

glycine, lysine, proline, serine, threonine, and phenylala-

nine) and organic acids (lactic acid, acetic acid, malic acid,

succinic acid, and citric acid) were earlier reported in

Cornus species (C. officinalis, and C. caprae hircus) (Xu

et al. 2009; Jung et al. 2011). The relative proportions of

Fig. 3 Schematic diagram of the primary and secondary metabolic

pathways and relative contents of metabolites in Cornaceae,

Fabaceae, and Rosaceae. COR Cornaceae, ROS Rosaceae, FAB

Fabaceae. The pathway was modified from the KEGG database

(http://www.genome.jp/kegg/). The Y-axis of the graphs represents

peak areas in log scale. Data are the three plant families’ mean value,

with the error bars representing deviation values (COR, n = 7; ROS,

n = 18; FAB, n = 9). The relatively higher contents of the metabo-

lites are represented by red boxes (Cornaceae), blue boxes (Rosa-

ceae), and green boxes (Fabaceae) (color figure online)

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gluconic acid (24), allose (26), and melibiose (27) were

observed to be comparatively higher in Rosaceae than in

Cornaceae and Fabaceae. From the perspective of bioac-

tivity phenotypes, gluconic acid was reported in Potentilla

anserina (Rosaceae), which catalyzes the periplasmic

oxidation of glucose (Rashid et al. 2007; Werra et al.

2009). Similarly, allose is related with antibacterial flavo-

noids glycosides to Prunus armeniaca (Rashid et al. 2007),

whereas melibiose in P. dulcis was related to heat and

drought stress (Dey 1979; Rabert et al. 2015). Here, we

report that malonic acid (1), D-ribonic acid (15), xylitol

(17), fucose (18), tagatofuranose (19), pinitol (20), dulcitol

(23), and eleven amino acids (4–14) were observed in

relatively higher proportions in Fabaceae than in Cor-

naceae and Rosaceae. Previously, the prominent amino

acids, viz., alanine, valine, isoleucine, proline, serine,

threonine, aspartic acid, GABA, glutamic acid, phenylala-

nine, and tryptophan, have been identified in L. maxi-

mowiczii, Sophora alopecuroides L. and several other

species (Lotus corniculatus and Medicago 9 varia) of the

Fabaceae family (Scherling et al. 2010; Wang et al. 2013;

Kim et al. 2015). Functionally, amino acids such as proline

and glutamic acid are directly or indirectly related to the

regulation of plant responses to diverse environmental

stimuli, including light and mineral availability as well as

biotic and abiotic stresses. Threonine and tryptophan con-

tribute to the nutritional quality of plant-based foods (Galili

and Hofgen 2002). Phenylalanine is an important

metabolite in plant metabolism and is crucial for the syn-

thesis of flavonoids (Burbulis and Winkel-Shirley 1999;

Vogt 2010). Although the functions of GABA is not well

known in plants, it reportedly accumulates in response to

hypoxia, cold, heat shock, drought, or mechanical stresses,

and often participates in signal transduction (Facchini et al.

2000).

The present findings suggest that organic acids, sugars,

and sugar alcohols were not found to exhibit any specific

distribution pattern among the three plant families. In

contrast, the proportions of amino acids were particularly

high in Fabaceae, followed by Cornaceae and Rosaceae.

We can further presume that secondary metabolites flowed

from the shikimate pathway via the phenylpropanoid

pathway and finally to the flavonoid pathway. Elaborating

further our conjectures, we found that ellagitannins and

flavonols such as myricetin, myricetin derivatives, quer-

cetin derivatives, kaempferol derivatives, ellagic acid, and

tellimagrandin II metabolism were relatively higher in

Cornaceae than in Fabaceae and Rosaceae (Fig. 3). The

fruits of C. mas L. have earlier been studied for the qual-

itative–quantitative evaluation of flavonols, such as quer-

cetin derivatives and kaempferol derivatives (Pawlowska

et al. 2010). Additionally, hydrolyzable tannins have been

isolated from the fruits and seeds of C. officinalis (Hatano

et al. 1989; Lee et al. 2011). Moreover, flavonols such as

myricetin and kaempferol derivatives with antioxidant

activities were reported from C. kousa fruits (Vareed et al.

2007). Our pathway analysis suggests that ellagitannins

were synthesized from shikimic acid via gallic acid through

the shikimate pathway (Fig. 3). Presumably, the ellagi-

tannins are formed from galloyl glucose by the coupling

reaction in dicotyledons predominantly found among

Hamamelidae, Dilleniidae, and Rosidae (Bate-Smith et al.

1975). Flavonoids such as flavonols, flavones, isoflavones,

and flavan-3-ols were identified in Cornaceae, Fabaceae,

and Rosaceae. Flavonoids, the phenolic compound of

plants, have been studied for their chemical diversity and

associated roles including bioactivities, insect resistance,

and defense metabolites (Pandey et al. 2014). Flavonoid

metabolism leading to the biosynthesis of lignins and

sinapate esters consists of numerous intermediates includ-

ing isoflavones, flavones, flavonols, flavandiols, chalcones,

and anthocyanins (Winkel-Shirley 2001). The insight

gained through understanding the structures of complex

synthetic enzymes enabled researchers to understand the

various aspects of flavonoid biosynthesis related to its

enzymology and subcellular organization (Winkel-Shirley

2001). The occurrence of quercetin and kaempferol (fla-

vonol O-glycosides compounds) distinguishes Cornaceae

genera, viz., Cornus, Aucuba, and Mastixia, from the fla-

vone O-glycosides containing Helwingiaceae (genus Hel-

wingia) (Iwashina 2000). Interestingly, the proportions and

metabolism of isoflavones and flavones, viz., apigenin

derivatives, luteolin, luteolin derivatives, genistein, daid-

zein, and formononetin, were relatively higher in Fabaceae

than in Cornaceae and Rosaceae. The isoflavones (daid-

zein, daidzein derivatives, genistein, and genistein deriva-

tives) and flavones (apigenin, apigenin derivative, luteolin,

and luteolin derivatives) were previously identified from

the leaf and stem samples of L. maximowiczii and G.

tinctoria L. Moreover, genistein and daidzein are pre-

dominantly synthesized in soybean and other Fabaceae

genera (Jung et al. 2000; Tuczkiewica et al. 2004; Kim

et al. 2015). These metabolites have crucial roles, partic-

ularly in plant defense from pest invasion and the onset of

root nodulation through the establishment of symbiotic

relationship with nitrogen-fixing rhizobial bacteria (Jung

et al. 2000; Galili and Hofgen 2002). Nitrogen fixation in

plants occurs in close conjunction with amino acid meta-

bolism and protein synthesis (Fowden 1967). Isoflavone-

mediated root nodulation and nitrogen fixation is often

thought to be associated with higher rates of amino acid

metabolism in Fabaceae plants. Phenolic acids and flavan-

3-ols such as quinic acid derivatives, epicatechin, and

cinchonain I were found in relatively higher proportions in

Rosaceae followed by those in Cornaceae and Fabaceae,

respectively. The fruits of Rosaceae family such as

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strawberry, blackberry, plum, cherry, and Sorbus domes-

tica are reportedly rich in various phenolic acids like caf-

feic acid, syringic acid, quinic acid derivatives, and vanillic

acid (Termentzi et al. 2008; Vasco et al. 2009). Quinic acid

derivatives mediate the transformation of phenylalanine to

a variety of secondary metabolites such as lignins, stilbe-

nes, and flavonoids through the phenyl propanoid pathway,

which is specific to plants (Winkel-Shirley 1999). These

metabolites perform several crucial functions in plants

including growth, defense, UV protection, and reproduc-

tion (Winkel-Shirley 1999). Shikimate and quinate esters

serve as the specific substrates for the enzyme Cyp98A3,

which catalyze the hydroxylation of the meta-form of the

hydrocinnamoyl shikimate and quinate esters (Vogt 2010).

Functionally, some hydroxycinnamoyl quinates such as

caffeoyl quinate, primarily function as plant defense

compounds or antioxidant molecules, and thus synthesized

in elevated proportions among Rosaceae (Winkel-Shirley

1999; Vogt 2010). Hence, our study formulates a correla-

tion between the complex metabolite profiles from

different plant families (Cornaceae, Fabaceae and Rosa-

ceae), which further envisages the levels of family-specific

molecules in corresponding metabolic pathways.

Correlations between metabolites and antioxidant

activities among three plant families

Antioxidant activities (ABTS, DPPH, and FRAP), TPC,

and TFC were measured to compare the 34 different spe-

cies of Cornaceae, Fabaceae, and Rosaceae. The average

values for the antioxidant activities, TPC, and TFC towards

the metabolites extracted from these 34 different species

were grouped among Cornaceae, Fabaceae, and Rosaceae

(Fig. 4). The average antioxidant activities and TPC were

found to be the highest among the Rosaceae followed by

Cornaceae and Fabaceae, respectively. Although the levels

of antioxidant activities and TPC were comparable among

Cornaceae and Rosaceae; however, they were significantly

lower in Fabaceae. In contrast, the TFC levels were highest

among Fabaceae followed by Rosaceae and Cornaceae,

Fig. 4 Antioxidant activity assays: a ABTS, b DPPH, c FRAP,

d total phenolic content, and e total flavonoid content for the three

plant families average value. The same letter indicates values that are

not significantly different by Duncan’s multiple range tests at 5 %

significance level. COR Cornaceae, ROS Rosaceae, FAB Fabaceae

(color figure online)

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respectively. However, the variations for flavonoid levels

were statistically insignificant among all three plant fami-

lies at p\ 0.05.

To better represent the correlation of metabolites with

their antioxidant activities, the correlation map was visual-

ized (Fig. 5). The Pearson’s correlation coefficients among

the relative contents of 27 selected metabolites and their

antioxidant activities (ABTS, DPPH, and FRAP) were cal-

culated. According to the correlation assay, 14 metabolites

showed positive correlation while the remaining 13 showed

negative correlation. Specifically, the five metabolites

including epicatechin (28), quinic acid (54), 4-O-caf-

foylquinic acid (55), coumaroyl-caffeoylquinic acid, and

cinchonain I (59) were found in relatively higher proportions

in Rosaceae than in the other two families. Further, the nine

metabolites including quercetin galloylglucoside (35),

myricetin-O-arabinopyranoside (36), quercetin-O-xyloside

(40), quercitrin (41), kaempferol-O-galactopyranoside (42),

galloylmyricitrin (43), galloylquercitrin (44), tellimagrandin

II (57), and ellagic acid (58) were detected in relatively high

concentrations among the Cornaceae plants. On the other

hand, the remaining 13 metabolites were observed to be in

relatively higher proportions among Cornaceae and Rosa-

ceae, exhibiting positive correlation coefficients

(0.6[ r[ 0)with antioxidant activities. In congruencewith

our results, certain metabolites such as flavonols (myricetin,

quercetin, and kaempferol) fromC. kousa and phenolic acids

(quinic acid and quinic acid derivatives) from blackberry,

chokeberry, strawberry, and cherry have been shown to

exhibit antioxidant activities (Lidija et al. 2007; Vareed et al.

2007; Podio et al. 2015). The relative concentrations of the

eight metabolites, viz., apigenin-C-hexoside (46), apigenin-

methyl ether-rutinoside (47), luteolin (48), luteolin 4-methyl

ether (49), apigenin 4-methyl ether (50), daidzein (51),

genistein (52), and formononetin (53), were proportionally

higher in Fabaceae. However, these metabolites showed a

Fig. 5 Correlation patterns between the secondary metabolite levels

and antioxidant activity assays (ABTS, DPPH, and FRAP). Groups of

secondary metabolites such as flavan-3-ols, phenolic acids, ellagitan-

nins, flavonols, isoflavones, and flavones were identified as signifi-

cantly different metabolites through PLS-DA. Each square indicates

Pearson’s correlation coefficient of a pair of metabolites and

antioxidant activities. Red and blue colors represent positive

(0\ r\ 0.6) and negative (-0.6\ r\ 0) correlations, respectively

(color figure online)

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negative correlation coefficients (0[ r[-0.6) with

respect to their antioxidant activities. Although, the iso-

flavones (genistein, daidzein, and formononetin) and fla-

vones (apigenin, luteolin, and their derivatives) from Salvia

officinalis, Olea europaea L. leaves, and Rooibos tea were

reported to exhibit significant antioxidant activities (Ruiz-

Larrea et al. 1997; von Gadow et al. 1997; Garcia et al. 2000;

Lu and Foo 2001).

The antioxidant activities (using ABTS method) and

average metabolite concentrations were evaluated to for-

mulate their correlations among each of the plant families

(Table 2). The nine selected metabolites were selected for

their previously reported antioxidant activities (Record

et al. 1995; Cao et al. 1997; Pekkarinen et al. 1999). The

relative EC50b value for each metabolite was derived from

the ABTS graph against the concentration range for stan-

dard compounds. The relative EC50b values for the

metabolites were observed in decreasing order as follows:

epicatechin (28)[ genistein (52)[ luteolin (48)[ ellagic

acid (58)[ daidzein (51)[ quercitrin (41)[ luteolin

4-methyl ether (49)[ apigenin 4-methyl ether

(50)[ caffeoylquinic acid (55). The highest antioxidant

activity (EC50b = 1.00) recorded was approximately

fourfold higher than its least observed value

(EC50b = 4.34). Previously, the antioxidant activities of

compounds were attributed to the number of (C2–C3)

double bonds and keto-groups in their C-ring, which was

the reason given for the decreasing order of activities of

quercetin followed by rutin and (?)-catechin, respectively

(Pekkarinen et al. 1999). Additionally, the antioxidant

activities for flavonols including myricetin, quercetin, and

kaempferol were reported as being directly proportional to

the number of phenolic hydroxyl groups in their B-ring. In

the case of the isoflavones (genistein and daidzein), higher

antioxidant activities were observed in the presence of a

free 40-hydroxy group in their structures (Ruiz-Larrea et al.

1997). In general, phenolic hydroxyl groups are assumed to

enhance the antioxidant activities of phenolic acids (4-O-

caffeoylquinic acid), while methoxylation of the hydroxyl

groups causes an activity reduction (Lu and Foo 2001). The

cumulative concentrations for the nine selected metabolites

among the three plant families were detected highest in

Rosaceae (110.76 mg/L), followed by Cornaceae

(99.45 mg/L), and Fabaceae (27.85 mg/L), respectively.

These results further support the findings that antioxidant

activities of the extracts from Fabaceae were relatively

lower than Cornaceae and Rosaceae families. Moreover,

this explains the negative correlation between the

metabolite concentrations in Fabaceae and their antioxidant

activities.

Table 2 Assessment of

antioxidant activity and

quantitative estimations of the

selected nine metabolites of

Cornaceae, Fabaceae, and

Rosaceae (color figure online)

MetaboliteABTS Concentration (mg/L)

c

EC50

a(mg/L) Relative EC

50

bCornaceae Rosaceae Fabaceae

Epicatechin (28) 36.01 ± 1.15 1.00 0 20.11 0 Genistein (52) 36.70 ± 0.48 1.02 0 0.11 0.61Luteolin (48) 49.48 ± 0.42 1.37 0 0.09 0.14Ellagic acid (58) 50.70 ± 0.68 1.41 78.76 47.22 11.94Daidzein (51) 63.34 ± 1.82 1.76 0 0 0.04Quercitrin (41) 68.07 ± 0.19 1.89 20.69 2.30 5.00Luteolin 4-methyl ether (49) 116.76 ± 1.65 3.24 0 0 0.87Apigenin 4-methyl ether (50) 128.20 ± 0.55 3.56 0 0 9.254-O-Caffeoylquinic acid (55) 156.21 ± 1.36 4.34 0 40.93 0

Total concentration 99.45 110.76 27.85

The color scheme is as follows: lower limit value, 0 (white); upper limit, 78 (red)a The effective concentration of antioxidant compounds necessary to decrease the radical concentration by

50 %; data are expressed as mean ± standard deviation (Cornaceae, n = 7; Rosaceae, n = 18; Fabaceae,

n = 9)b Relative to epicatechinc Nine metabolites were measured via quantitative estimation and represented using a heat map with

relative content indicated by heat scale

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Conclusions

In the present work, we propose a high-throughput unbi-

ased strategy for metabolite fingerprinting with pathway

and bioactivity correlative methods towards the charac-

terization of economically important plant families (Cor-

naceae, Fabaceae, and Rosaceae). An estimation of the

family-specific library metabolites using GC–TOF-MS and

UHPLC–LTQ-IT-MS/MS with multivariate analyses and

their relative proportions in respective pathways further

predicts the idea of conserved phytochemicals across the

plant hierarchies. As evident from the correlation map

analysis, it is highly likely that the proportional contents of

specific classes of metabolites influence their antioxidant

activities in the sample extracts from each family. The

present approach has the potential to complement the

ongoing global efforts to elucidate the complex

metabolotypes for biological species subjected to varying

natural or experimental conditions.

Author contribution statement CHL and SL designed

this research. SYS performed the experiments and data

analysis. SYS, NKK, SL, DS, GRK, and JSL conducted the

data interpretation. The six samples of Cornaceae,

excluding Cornus macrophylla, were procured from the

Korea Plant Extract Bank and the remainder of the 28 plant

species were provided by the National Institute of Bio-

logical Resources. GRK and JSL participated in sample

preparation. HSY and JY revised the paper. SYS wrote the

paper. All authors approved the final manuscript.

Acknowledgments This work was supported by a Grant from the

National Institute of Biological Resources (NIBR), funded by the

Ministry of Environment (MOE) of the Republic of Korea

(NIBR201628102).

Compliance with ethical standards

Conflict of interest The authors declare that they have no competing

interests.

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