measuring protein interactions with lipid bilayers...

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The AnaLight ® 4D, DPI has the capability not only to measure the dry mass of a lipid bilayer but also its’ degree of birefringence (a direct measure of the order of packing of the bilayer). The birefringence is simply the difference in Refractive Index (RI) perpendicular and parallel to the bilayer. This provides a very rich perspective as compared to techniques which only measure the mass of interaction as changes within the bilayer structure can be measured at the same time as the interaction. Figure 1 EXPERIMENTAL Two bilayers composed of 5% PIP2: 95% POPC and 10% POPS: 90% POPC were laid down from extruded liposomes on a UV Ozone cleaned surface of an AnaChip™ sensor. One bilayer was laid down on each separate channel of the sensor surface to create simultaneous experiment and control. The bilayers were then each challenged with a protein of interest (at 1uM concentration). RESULTS AND DISCUSSION Lipid bilayers were successfully deposited on the surface of the AnaChip™ at a liposome loading of 0.1 mg/ml. The mass and birefringence values are given in the table below. The lipid bilayers were then challenged with 1uM of protein each. The real time data in Figure 2 shows that mass information only provides limited data indicating that the protein is interacting with the PIP2 containing bilayer and to a much lesser extent with the bilayer containing POPS (i.e. the affinity for PIP2 is greater). The real time birefringence response shown in Figure 3 shows the birefringence decreasing with interaction in the case of the PIP2 containing bilayer with only a slight initial increase with POPS, i.e. the protein is disrupting the order in the bilayer containing PIP2 by an insertion process and is simply sitting on top of the bilayer in the case of the control. Figure 2: Mass versus time plot INTRODUCTION Dual Polarisation Interferometry (DPI) is an important enabling tool for cell biology, particularly the study of membranes and membrane proteins. In particular the behaviour and interactions of proteins and peptides with lipid bilayers can be studied. This application note describes the use of DPI for the real time, quantitative analysis of protein- lipid interactions. The molecular system under investigation incorporates phospholipids commonly found in cell membranes and known to be involved in the regulation of a range of membrane proteins, PtdIns(4,5)P 2 (D-myo-phosphatidylinositol 4,5-biphosphate known as PIP2). See Fig 1. 5%PIP2: 95%POPC Birefringence (RI units) Mass 0.1mg/ml 0.019 4.23 ng/mm 2 SPECIALISTS IN BIOPHYSICS FOR BIOCHEMISTS Measuring protein interactions with lipid bilayers containing PIP2 Mass (ng/mm ) on PIP2 Mass (ng/mm ) on POPS Mass (ng/mm ) 2 Time (s) 100 200 300 400 0 -100 2 2 0.1 0.3 0.5 0.7 0.9 1.1 1.3 1.5 -0.1 -0.3 -0.5

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Page 1: Measuring protein interactions with lipid bilayers ...static.progressivemediagroup.com/Uploads/CaseStudy/... · • Interrogate lipid bilayers challenged with proteins or peptides

The AnaLight® 4D, DPI has the capability not only to measure

the dry mass of a lipid bilayer but also its’ degree of

birefringence (a direct measure of the order of packing of the

bilayer). The birefringence is simply the difference in Refractive

Index (RI) perpendicular and parallel to the bilayer. This

provides a very rich perspective as compared to techniques

which only measure the mass of interaction as changes within

the bilayer structure can be measured at the same time as the

interaction.

Figure 1

EXPERIMENTAL

Two bilayers composed of 5% PIP2: 95% POPC and 10%

POPS: 90% POPC were laid down from extruded liposomes

on a UV Ozone cleaned surface of an AnaChip™ sensor. One

bilayer was laid down on each separate channel of the sensor

surface to create simultaneous experiment and control. The

bilayers were then each challenged with a protein of interest

(at 1uM concentration).

RESULTS AND DISCUSSION

Lipid bilayers were successfully deposited on the surface of the

AnaChip™ at a liposome loading of 0.1 mg/ml. The mass and

birefringence values are given in the table below. The lipid

bilayers were then challenged with 1uM of protein each.

The real time data in Figure 2 shows that mass information

only provides limited data indicating that the protein is

interacting with the PIP2 containing bilayer and to a much

lesser extent with the bilayer containing POPS (i.e. the affinity

for PIP2 is greater). The real time birefringence response

shown in Figure 3 shows the birefringence decreasing with

interaction in the case of the PIP2 containing bilayer with only a

slight initial increase with POPS, i.e. the protein is disrupting

the order in the bilayer containing PIP2 by an insertion process

and is simply sitting on top of the bilayer in the case of the

control.

Figure 2: Mass versus time plot

INTRODUCTION

Dual Polarisation Interferometry (DPI) is an important enabling toolfor cell biology, particularly the study of membranes and membraneproteins. In particular the behaviour and interactions of proteins andpeptides with lipid bilayers can be studied. This application notedescribes the use of DPI for the real time, quantitative analysis of protein-lipid interactions. The molecular system under investigation incorporatesphospholipids commonly found in cell membranes and known to beinvolved in the regulation of a range of membrane proteins, PtdIns(4,5)P2

(D-myo-phosphatidylinositol 4,5-biphosphate known as PIP2). See Fig 1.

5%PIP2:95%POPC

Birefringence (RI units)

Mass

0.1mg/ml 0.019 4.23 ng/mm2

S P E C I A L I S T S I N B I O P H Y S I C SF O R B I O C H E M I S T S

Measuring protein interactions withlipid bilayers containing PIP2

Mass (ng/mm ) on PIP2 Mass (ng/mm ) on POPS

Mas

s (n

g/m

m )2

Time (s)

100 200 300 4000-100

2 2

0.1

0.3

0.5

0.7

0.9

1.1

1.31.5

-0.1

-0.3

-0.5

Page 2: Measuring protein interactions with lipid bilayers ...static.progressivemediagroup.com/Uploads/CaseStudy/... · • Interrogate lipid bilayers challenged with proteins or peptides

Figure 3: Birefringence versus time plot

More comprehensive information still is obtained by plotting

mass versus birefringence for both bilayers and this is shown

in Figure 4. Here it can be seen that the interaction with the

PIP2 bilayer is a complex four stage process. Initially there is

adsorption of protein on the bilayer surface to a mass value of

0.5 ng/mm2 (no change in birefringence as mass increases).

At this point the protein starts to insert into the bilayer with an

increase in mass and a significant decrease in birefringence.

Following a wash (return to buffer) there is protein removal from

the bilayer surface (no change in birefringence but a loss in

mass). Finally there follows an increase in birefringence (and

decrease in mass) indicating that material is being removed

from the bilayer and the bilayer order is returning. At the end of

the experiment, a significant proportion of the protein remains

associated with the bilayer and is clearly still inserted as the

birefringence does not fully recover.

In contrast, in the POPS containing bilayer, we see a slight but

reversible increase in birefringence and mass as protein simply

adsorbs to the surface of the bilayer and then desorbs when

washing.

Figure 4: Birefringence versus Mass plot for 1uM protein interacting with thetwo lipid bilayers

CONCLUSIONS AND BENEFITS

These experiments demonstrate how a large amount of

information can be obtained from a simple single real time

experiment using the AnaLight® 4D Dual Polarisation

Interferometer. The AnaLight® 4D instrument provides the

researcher with a key tool with which to both

quantify and interpret interactions of proteins

and peptides with lipid bilayers.

• Rapidly and reproducibly lay down lipid bilayers and

interrogate their quality.

• Utilise the measurement of birefringence to quantify the

degree of order in the bilayers.

• Interrogate lipid bilayers challenged with proteins or

peptides.

• Gain detailed insight into the mechanisms of interactions of

proteins and peptides with lipid bilayers by utilising the

birefringence versus mass plot.

• Differentiate and quantify absorption and adsorption

processes in a lipid environment.

For further applications information contact:[email protected]

Birefringence 5% PIP2 95% POPC) Mass (ng/mm ) on POPS

Time (s)

Bire

frin

genc

e 100 200 300 400-100 0

0.002

0.001

0

-0.001

-0.002

-0.003

-0.004

-0.005

2

0

Bire

frin

genc

e

Mass Change (ng/mm-2)

5% PIP2 95% POPC 10% POPS 90% POPC

1.41.210.80.60.40.2

0.001

0.0005

0

-0.0005

-0.001

-0.0015

-0.002

-0.0025

-0.003

-0.0035

-0.004

Adsorption

Insertion

Desorption ofinserted protein

Desorptionfrom surface

Wash

Farfield • Voyager West Wing • Level 7 • Chicago Avenue • Manchester Airport • Manchester • M90 3DQ • United Kingdom

Tel: +44 (0)161 436 9700 • Fax: +44 (0)161 437 7527 • Email: [email protected] • www.farfield-group.com

Farfield, a Biolin Scientific Company

NOTE: F00001 05-11