matlab code presentation
DESCRIPTION
The presentation slides from my term MATLAB project summarizing my code and its function. From Dec 2007.TRANSCRIPT
Discharge characteristics of motor units during long contractions
Michael Pascoe, M.S.
Background
• Motor unit
• Functional quantum of the neuromuscular system
• Comprises an alpha MN, its axon, and all the muscle fibers it innervates
Research Questions
•How long can a human voluntarily activate a motor unit?
•How does the discharge behavior change with time?
Surface EMG
Abduction force
Fine wire SMU
Spike2 - Sample Data
100 s
0.75 V
1 V
5 %MVC
0.75 V
sEMG
Force
iEMG
MU
Flowchart
Interspike Intervals
Motor Unit Discharge Times
Filter Out Long Intervals (> 250 ms)
Filter Out Short Intervals (< 10 ms)
Divide Into 5 Equal Duration Epochs
Calculate Discharge Characteristics
Spike2 Data
SpikeStats.txt
mu_anal_longdur.m
Input
Epoch Boundaries
100 s
0.75 V
1 V
5 %MVC
0.75 V
sEMG
Force
iEMG
MU
epoch(1) epoch(2) epoch(3) epoch(4) epoch(5)
first spike last spike
Creating Equal Duration Epochsfor i = 1:length(dis) if (dis(i) < epoch1_end) epoch(1).values(j) = dis(i); j=j+1; elseif (dis(i) > epoch1_end & dis(i) < epoch2_end) epoch(2).values(k)=dis(i); k=k+1; elseif (dis(i) > epoch2_end & dis(i) < epoch3_end) epoch(3).values(l)=dis(i); l=l+1; elseif (dis(i) > epoch3_end & dis(i) < epoch4_end) epoch(4).values(m)=dis(i); m=m+1; elseif (dis(i) > epoch4_end & dis(i) <= dis(end)) epoch(5).values(n)=dis(i); n=n+1; endend
Create interspike intervals% Determine interspike interval in seconds isi(i).values = diff(epoch(i).values);
% Remove ISIs greater than 0.25 or less than 0.01 s (<4 or >100pps) isi(i).values = isi(i).values(find(isi(i).values<0.25 & isi(i).values>0.01)); sizeisifilt(i).values = size(isi(i).values);
Filter interspike intervals
Discharge Characteristics
• Mean discharge rate
• Standard deviation of discharge rate
• Coefficient of variation for discharge rate
• Standard error of the mean of discharge rate
• Mean interspike interval
• Standard deviation of interspike interval
• Coefficient of variation for interspike interval
Stein et al. Nat Rev Neurosci 2005, 6: 389-397
Output
Output
• A single text file (one trial)
• Subject initials and date preserved
• _SpikeStats.txt in place of _Times.txt
• Column headers in first row
• Output variable values in five rows
Output
Output
Trial Name Mean DR (pps-direct) Mean DR (pps-estimate) SD DR (pps) SEM DR (pps) CV DR (pps) Mean ISI (ms) SD ISI (ms) CV ISI (%) Start time (s) End time (s) Train Duration (s) Impulses (No.) ISIs (No.) ISIs <10ms ISIs >250ms ISIs removed
BKB_(11_21_2007)_Times 11.24653 11.228448 0.825317 0.825317 7.350231 89.059501 21.935176 24.629799 698.31423 753.63023 55.30595 622 621 0 0 0
10.682879 10.664742 0.797252 0.797252 7.475587 93.766922 22.891283 24.412963 753.63023 808.94623 55.13495 589 588 0 0 0
11.581364 11.722199 0.748408 0.748408 6.384536 85.308229 18.64768 21.859181 808.94623 864.26223 55.17485 639 638 0 2 2
9.844349 10.698871 1.000401 1.000401 9.350527 93.467804 28.586902 30.584759 864.26223 919.57823 55.15855 543 542 0 13 13
9.934456 10.455567 1.093795 1.093795 14.913897 92.346243 55.07046 40.389043 919.57823 974.89423 55.18775 39 38 0 46 46
ValidationEpoch(5) MATLAB Spike2
MeanDR (pps) 7.334067 7.33Std Dev DR (pps) 1.093795 1.09
CV DR (%) 14.913897 14.91
Mean ISI (ms) 136.35 136.35Std Dev ISI (ms) 55.07046 55.07
CV ISI (%) 40.389043 40.39
Start Time (s) 919.57823 919.578End Time (s) 974.89423 974.894Train Dur (s) 55.18775 55.188
No. Impulses 39 39No. ISIs 38 38
ISIs < 10 ms 0 0ISIs > 250 ms 46 46
In the near future...
•Analysis of surface EMG
•Analysis of index finger abduction force
•Distribution statistics for discharge times