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Lecture 8: Theory of Chemical Equilibria(I) Statistical Thermodynamics

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Page 1: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Lecture 8: Theory of Chemical Equilibria(I)

Statistical Thermodynamics

Page 2: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Chemical Equilibria

reactant A→B product

•  Two-state equilibria include: chemical isomerization; the folding of a protein from an unfolded to folded state

•  The equilibrium constant K is the ratio of numbers of particles in each of the two states at equilibrium. K = NB/NA

•  The quantity that predicts the chemical equilibria is the chemical potential

•  A major goal in chemistry is to predict the equilibria of chemical reactions, including the relative amounts of the reactants and products from their atomic masses and structure properties.

K

partition functions chemical potential equilibrium constant

Page 3: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Equilibria Condition

dG = −SdT +Vdp+µAdNA +µBdNB

•  At constant T and P:

•  Consider the Gibbs free energy of the system:

dG = µAdNA +µBdNB = 0

•  Every molecule is in either state A or B:

NA + NB = Ntotal = constant dNA + dNB = 0 dNB = −dNA

•  Condition for equilibria:

dG = µAdNA −µBdNA = (µA −µB )dNA = 0

µA = µB

Page 4: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Partition Function for Chemical Reactions

q = exp(−εi / kT )i=0

t

∑ = exp(−ε0 / kT )+ exp(−ε1 / kT )+...+ exp(−εt / kT )

•  Define a reduced partition function with the ground-state term factored out:

qreduce = exp(ε0 / kT )q

=1+ exp[−(ε1 −ε0 ) / kT ]+ exp[−(ε2 −ε0 ) / kT ]+...+ exp[−(εt −ε0 ) / kT ]

µ = −kT ln( qN)

•  Partition function for chemical potential

Page 5: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

µA = −kT ln(qANA

) µB = −kT ln(qBNB

)

•  From condition for equilibria: µA = µBqANA

=qBNB

K =NB

NA

=qBqA

=qreduce,B exp(−ε0,B / kT )qreduce,A exp(−ε0,A / kT )

=qreduce,Bqreduce,A

exp[−(ε0,B −ε0,A ) / kT ]

•  The above equation gives a way to compute K from the atomic properties of A and B through their partition functions.

•  Takes no account of the interactions of one molecule with another, it applies only to isolated particles such as those in the gas phase.

Page 6: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

More Complex Equilibria

aA+bB→ cCK

•  a, b and c indicate the stoichiometries of species A, B and C.

•  At constant T and P:

•  The equilibrium is now subject to two stoichiometric constraints:

dG = µAdNA +µBdNB +µCdNC = 0

NA

a+NC

c= constant NB

b+NC

c= constant

dNA = −acdNC

dNB = −bcdNC

dG = −acµAdNC −

bcµBdNC +µCdNC = 0 −

acµA −

bcµB +µC = 0

Page 7: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

cµC = aµA + bµB•  Condition for equilibria:

c[−kT ln( qCNC

)]= a[−kT ln( qANA

)]+ b[−kT ln( qBNB

)]

( qCNC

)c = ( qANA

)a ( qBNB

)b

•  To express the relative numbers of particles of each species present at equilibrium, a natural definition of the equilibrium constant K arises from rearranging the above equation.

K =Nc

C

N aAN

bB

=qcCqaAq

bB

=qcreduce,C

qareduce,Aqbreduce,B

exp[−(cε 0,C−aε0,A − bε0,B ) / kT ]

Δε 0difference in ground-state energies:

Page 8: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Finding Ground-State Energies

•  To define the ground state energies further, we must resolve a matter of the vibrational ground state.

•  Vibrational energies: εvib = (n+12)hν

n is the quantum number, n = 0, 1, 2, 3 … ν = (1 / 2π )(ks /m)

1/2is the vibrational frequency of the harmonic oscillator

well-bottom state with energy 0

zero-point state with energy (1/2) hν

dissociated state with energy

Define Ground-State energy as: ε 0= ε (well-bottom state) −ε(dissociated state)

εdis

= −εdisDefine dissociation energy as:

D = ε(dissociated state) −ε(zero-point state) = εdis − (1 / 2)hν

D = −ε0 − (1 / 2)hν

Page 9: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

qvib =exp(−hν / 2kT )1− exp(−hν / kT )

qvib exp(−ε0 / kT ) =exp(−hν / 2kT )1− exp(−hν / kT )

exp[(D+ hν / 2) / kT ]

=1

1− exp(−hν / kT )exp(D / kT ) = qVZ exp(D / kT )

qreduce = qtranqrotqvib

=qctran,C

qatran,Aqbtran,B

qcrot,Cqarot,Aq

brot,B

qcVZ ,CqaVZ ,Aq

bVZ ,B

exp[(cDC − aDA − bDB ) / kT ]

K = KtKrKv exp(ΔD / kT )

ΔD : d i f f e r e n c e b e t w e e n t h e dissociation energies of all the products and all the reactants

=qcreduce−VZ ,C

qareduce−VZ ,Aqbreduce−VZ ,B

exp(ΔD / kT )

K =qcreduce,C

qareduce,Aqbreduce,B

exp[−(Δε0 ) / kT ]

Page 10: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Example: Estimation of K

H2+D2 → 2HDK

•  The dissociation energies are 431.8 kJ/mol for H2; 439.2 kJ/mol for D2; and 435.2 kJ/mol for HD

ΔD = 2DHD −DH2−DD2

= −0.6kJ /molSo at T = 300K: exp(ΔD / RT ) = 0.79

Kt =[(2πmHDkTh

−2 )3/2 ]2

[(2πmH2kTh−2 )3/2 ]2[(2πmD2

kTh−2 )3/2 ]2= ( m2

HD

mH2mD2

)3/2 = ( 32

2× 4)3/2 =1.19

Kr =[(8π 2IHDkT ) / (σ HDh

2 )]2

[(8π 2IH2kT ) / (σ H2h2 )]2[(8π 2ID2kT ) / (σ D2

h2 )]2= (σ H2

σ D2

σ HD

)( I2HD

IH2 ID2)

= 4× ( 6.132

4.60×9.19) = 3.56

Page 11: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Kv =[1− exp(−hνHD / kT )]

−2

[1− exp(−hνH2/ kT )]−1[1− exp(−hνD2

/ kT )]−1=1

Since at T = 300K, (hv)/kT >> 1

There, K = KtKrKv exp(ΔD / kT ) =1.19×3.56×1×0.79 = 3.35

•  Rotation part contributes most, specially, the change in rotational symmetry is the main contributor to this equilibrium. The reaction is driven by the gain in entropy due to the rotational asymmetry of the products.

Page 12: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Pressure-Based Equilibrium Constants

•  Because pressures are easier to measure than particle numbers for gases, it is often more convenient to use equilibrium constants Kp based on pressures rather than equilibrium constant K based on the particle numbers

N = pV / kT

K =Nc

C

N aAN

bB

=(pCV / kT )

c

(pAV / kT )a (pBV / kT )

b =qcreduce−VZ ,C

qareduce−VZ ,Aqbreduce−VZ ,B

exp(ΔD / kT )

•  Multiple both sides by (V / kT )a+b−c

Kp =pcCpaA p

bB

= (kT )c−a−b (qreduce−VZ ,C /V )c

(qreduce−VZ ,A /V )a (qreduce−VZ ,B /V )

b exp(ΔD / kT )

Page 13: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Chemical Potentials in terms of Partial Pressures

µ = −kT ln( qN) = −kT ln( q

pV / kT) = kT ln( p

p0int) = µ 0 + kT ln p

•  Here p0int =qkTV

µ 0 = −kT ln(qkTV)

•  It divides the chemical potential into a part that depends on pressure kTlnp, and a part that does not µ0

•  µ0 is called the standard-state chemical potential, which is depend on temperature

Page 14: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Le Chatelier’s Principle

•  Any perturbation away from a stable equilibrium state must increase the free energy of the system.

•  The system will respond by moving back toward the state of equilibrium.

A→BK

•  Suppose a fluctuation changes the number of B molecules by an amount dNB.

dG = (µB −µA )dNB

•  Define a reaction coordinate , the factional degree to which the system has proceeded to B.

•  The total number of particles is fixed: , so

ζ = NB / (NA + NB )

NA + NB = N NB = Nζ dNB = Ndζ

dG = (µB −µA )Ndζ•  To move toward equilibrium, dG ≤ 0, so , must have opposite signs. (µB −µA ) dζ•  If , then the direct toward equilibrium is < 0, NB will decrease. •  Le Chatelier’s principle refers to the tendency of system to return to equilibrium by

moving in a direction opposite to that caused by an external pertuibation

µB > µA dζ

Page 15: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Temperature Dependence of Equilibrium

•  Measure K(T) at different temperatures, learn the enthalpy and entropy of the reaction, which is useful for constructing or testing microscopic models.

A→BK

•  At constant T and P, the condition for equilibrium is µA = µB

•  The pressure based equilibrium constant is Kp =pBpA

µ 0A + kT ln pA = µ0B + kT ln pB

lnKp = ln(pBpA) = −(µ

0B −µ

0A )

kT= −

Δµ 0

kTµ 0 = −kT ln(qkT

V)•  Recall , which depends on temperature

Page 16: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

G = H −TS

•  Chemical potential can be divided into partial molar enthalpy and entropy components.

µ = (∂G∂N)T ,P = (

∂H∂N)T ,P −T (

∂S∂N)T ,P = h−Ts

Δµ 0 = Δh0 −TΔs0

(∂ lnKp

∂T) = − ∂

∂T(Δµ

0

kT) = − ∂

∂T(Δh

0 −TΔs0

kT)

•  If , are independent of temperature: Δh0 = hB0 − hA

0 Δs0 = sB0 − sA

0

(∂ lnKp

∂T) = Δh

0

kT 2

Page 17: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

(∂ lnKp

∂T) = Δh

0

kT 2(∂ lnKp

∂(1 /T )) = −Δh

0

kvan’t Hoff relation

•  The relation provides a useful way to plot data to obtain Δh0

H2O→H2+(1 / 2)O2

•  van’t Hoff plots show lnK versus 1/T, the slope is

•  Water is more dissociated at higher temperatures

•  F o r d i s s o c i a t i o n , Δh 0 > 0 , i s t h e characteristic of bond-breaking processes

•  The enthalpy change is positive, so dissociation must be driven by entropy

•  The plot illustrates a common feature: they are often linear, so Δh0 is independent of temperature

−Δh0 / k

Page 18: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

(∂ lnKp

∂(1 /T )) = −Δh

0

kintegration

ln(Kp(T2 )Kp(T1)

) = −Δh0

k( 1T2−1T1)

•  Can be used to find how Kp depends on temperature if know Δh0 or determine Δh0 if Kp(T) is measured

•  Example: calculate enthalpy of dissociation of water: At T = 1500K, lnKp = -13.147 ; at T = 2257 K, lnKp = -6.4

Δh0 = −R ln(Kp(T2 )Kp(T1)

) / ( 1T2−1T1) = −8.1314JK −1mol−1 −13.1− (−6.4)

1 /1500−1/ 2257= 249kJ /mol

At T = 1500K:

Δµ 0 = −RT lnKp = −(8.1314JK−1mol−1)(1500K )(−13.147) =164kJ /mol

Δs0 = Δh0 −Δµ 0

T=(249−164)kJ /mol

1500K= 56.7JK −1mol−1

Page 19: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Gibbs-Helmholtz Equation

•  Generalize beyond chemical equilibria and the gas phase to any dependence of a free energy G(T) on temperature

H =G +TS S = −(∂G /∂T )p H =G −T (∂G∂T)p

d(u / v) = (v ʹu −u ʹv ) / v2

with v= T and u = G to express the temperature derivative of G/T as

(∂(G /T )∂T

)p =(∂G∂T)T −G(∂T

∂T)

T 2 =1T(∂G∂T)p −

GT 2 = −

1T 2 [G −T (

∂G∂T)p ]

(∂(G /T )∂T

)p = −H (T )T 2 (∂(F /T )

∂T)V = −

U(T )T 2

Gibbs-Helmholtz Equation

Page 20: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Lecture 8: Theory of Chemical Equilibria(II)

Statistical Thermodynamics

Page 21: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Equilibrium between Liquid and Gas

•  Consider a system of liquid in equilibrium with its vapor at constant T and P •  Free energy depends only on the chemical potentials and numbers of particles in

the two phase

dG = −SdT +Vdp+µvdNv +µldNl = µvdNv +µldNl

•  If total number of molecules is conversed:

Nv + Nl = Ntotal = cons tan t

dNv + dNl = dNtotal = 0 dNv = −dNl

dG = (µv −µl )dNv

•  The condition for equilibrium is dG = 0 , so

µv = µl

Page 22: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Lattice Model

•  How to compute •  Model liquid as a lattice of particles of a single type, liquid particles occupied the

crystalline lattice, with every site occupied by one particle •  The translational entropy of the lattice particles is zero, since pairs of particles

trade positions, the rearrangement can’t be distinguished, S = 0 •  Two particles of type A in terms of ‘bond’ energy: wAA < 0

•  This energy applies to every pair of particles that occupy neighboring lattice sites •  Consider the liquid system has total of N particle, each particle has z nearest

neighbors (coordinate number of lattice)

µl

U =NzwAA

2

F =U −TS = NzwAA

2µl = (

∂F∂N)T ,V =

zwAA

2

Page 23: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Lattice Model – Vapor Pressure

µv = kT ln(pp0int)•  Recall:

•  Equilibrium condition: kT ln(pp0int) = zwAA

2

p = p0int exp(zwAA

2kT)

•  This describes the vapor pressure P of the molecule A escape the liquid •  The vapor pressure is a measure of the density of vapor-phase molecule •  As the AA bonds are made stronger, wAA becomes more negative, P decreases

because molecule prefer to bond together in the liquid rather than to escape to the vapor phase

•  If wAA is fixed, increasing the temperature increases the vapor pressure

Page 24: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Clapeyron Equation

•  In last example, we see at fixed T and P, the equilibrium between liquid and vapor

•  Two points (P1,T1) and (P2,T2) at which the liquid and vapor are in equilibrium

µv (T2, p2 ) = µv (T1, p1)+ dµv (T, p)

µv (T2, p2 ) = µl (T2, p2 )•  The chemical potential at point 2 involves a small perturbation from point 1

µv (T1, p1) = µl (T1, p1)

µl (T2, p2 ) = µl (T1, p1)+ dµl (T, p)

dµv (T, p) = dµl (T, p)

•  Total differential equation

dµ(T, p) = (∂µ∂T)p,N dT + (

∂µ∂p)T ,N dp

Page 25: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

•  Based on Maxwell relation

(∂µ∂T)p,N = −(

∂S∂N)T ,p = −s (∂µ

∂p)T ,N = (

∂V∂N)T ,p = v

dµv = −svdT + vvdp = dµl = −sldT + vldp

•  Rearrange dpdT

=sv − slvv − vl

=ΔsΔv

Δs = sv − slΔv = vv − vl

is partial molar change of entropy

is partial molar change of volume

•  At phase equilibrium: Δµ = Δh−TΔs = 0 Δh = TΔswith is partial molar change of enthalpy Δh = hv − hl

dpdT

=ΔsΔv

=ΔhTΔv

Clapeyron equation

Page 26: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

•  The molar volume of the gas phase is much larger than the molar volume of the liquid, so

Δv = vv − vl ≈ vv = RT / p

dpdT

=ΔhTΔv

dpdT

=pΔhRT 2

d ln pdT

=ΔhRT 2

Clausius-Clapeyron equation

•  Integrate the equation, when is independent of p and T: Δh

d ln pp1

p2∫ =ΔhRT 2 dTT1

T2∫ ln p2p1= −

ΔhR( 1T2−1T1)

Page 27: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

•  Vapor pressure of benzene versus 1/T

•  lnp is linearly proportional to 1/T, and therefore Δh is independence of T and p

•  Δh can be obtained from slope and used to predict a boiling point with (p2,T2) if another boiling point (p1, T1) is known

Page 28: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Example: Apply of Clausius-Clapeyron Equation

•  If water boils at T1 = 373 K and P1 = 1 atm. At a high altitude where P2 = ½ atm, what is the boiling temperature T2 ? Δh = 40.66 kJ/mol

ln p2p1= −

ΔhR( 1T2−1T1) 1

T2=1T1−RΔhln p2p1

1T2=

1373K

− (8.314JK−1mol−1

40660J /mol)ln 12

T2 = 354K = 81°C•  Water boils at lower temperature at higher altitudes

Page 29: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Mixture: Entropy

•  Suppose there are NA molecules of species A, and NB molecules of species B. Together, they completely fill a lattice of N lattice sites

N = NA + NB

•  The multiplicity of states is the number of spatial arrangements of the molecules:

W =N!

NA!NB! S = k lnW

SAB = k ln(N!

NA!NB!) = k(NA lnN + NB lnN − NA lnNA − NB lnNB )

•  Define the mole fraction: xA = NA / N xB = NB / N

SAB = −k(NA ln xA + NB ln xB )•  To simplify further: let x = xA, so 1-x = xB

SAB / NK = −x ln x − (1− x)ln(1− x)

Page 30: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Mixture: Energy

•  In the lattice model, the total energy is the sum of the noncovalent bonds (or contact) of all the pairs of nearest neighbors

•  There are three possible types noncovalent bonds in the mixture: AA, BB, AB •  The total energy of the system:

UAB =mAAwAA +mBBwBB +mABwAB

is the number of AA bonds, mAA is the number of BB bonds, mBB

is the number of AB bonds, mAB

are the corresponding noncovalent interactions wAA wBB wAB,

,

•  Each lattice site has z sides, and every contact involves two sides. The total number of sides of type A can be expressed in terms of numbers of contacts:

zNA = 2mAA +mAB

zNB = 2mBB +mAB

Page 31: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

mAA =zNA −mAB

2

•  Solve the two equation to get and mAA mAB

mBB =zNB −mAB

2

UAB = (zNA −mAB

2)wAA + (

zNB −mAB

2)wBB +mABwAB

= (zwAA

2)NA + (

zwBB

2)NB + (wAB −

wAA +wBB

2)mAB

In this expression, the only unknown is , the number of AB contact, we need to use some approximation to estimate it

mAB

Page 32: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

The Mean-Field Approximation

•  The mean-field approximation: for any given numbers NA and NB, the particles are mixed as randomly and uniformly as possible.

•  Consider a specific site next to an A molecule, based on the approximation, the probability that a B molecule occupy the neighboring site is equal to the probability that any site is occupied by B:

pB =NB

N= xB =1− x

•  There are z nearest-neighbor sites for each A molecule, the average number of AB contacts made by that particle A molecule:

zpB = zNB

N•  The total number of A molecules is NA, so

mAB = NAzpB =zNANB

N

Page 33: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

UAB = (zwAA

2)NA + (

zwBB

2)NB + (wAB −

wAA +wBB

2)mAB

= (zwAA

2)NA + (

zwBB

2)NB + z(wAB −

wAA +wBB

2) NANB

N

= (zwAA

2)NA + (

zwBB

2)NB + kTχAB

NANB

Nwhere we define a dimensionless quantity called the exchange parameter:

χAB =zkT(wAB −

wAA +wBB

2)

Page 34: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

The Free Energy and Chemical Potential of Mixture

F =U −TS

FAB =UAB −TSAB = (zwAA

2)NA + (

zwBB

2)NB + kTχAB

NANB

N+ kTNA ln(

NA

N)+ kTNB ln(

NB

N)

•  The free energy of a mixed solution of NA number of A molecules and NB number of B molecules:

•  The chemical potential for A is found by taking the derivative of F with respective to NA, holding NB constant:

µA = (∂FAB∂NA

)NB ,T= kT ln xA +

zwAA

2+ kTχAB (1− xA )

2

µB = (∂FAB∂NB

)NA ,T= kT ln xB +

zwBB

2+ kTχAB (1− xB )

2

µ = kT ln x + other terms

•  The chemical potential of one component in solution depends on mole fraction

Page 35: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Activity and Standard State

•  The more general case: µ = µ°+ kT lnγ x

is the activity coefficient is the standard state chemical potential

γµ°

•  In terms of molar concentration µ = µ°+ kT ln γcc°

c is the actual concentration with unit mol/L , co is the standard concentration. Usually, co is set to 1 mol/L . At low concentration of c, γ ≈1

Page 36: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Equilibrium in Solutions

aA+bB→ cC+dD

•  The equilibrium condition : aµA+bµB = cµC + dµD

a(µ 0A + kT lncAc0)+b(µ 0B + kT ln

cBc0) = c(µ 0C + kT ln

cCc0)+ d(µ 0D + kT ln

cDc0)

cµ 0C + dµ0D − aµ

0A − bµ

0B = −kT ln

(cC / c0 )a (cD / c

0 )b

(cA / c0 )c (cB / c

0 )d

ΔF 0 =cµ 0C + dµ0D − aµ

0A − bµ

0B = −kT lnK

c

•  is the standard free energy change of the reaction ΔF 0

•  is the concentration based equilibrium constant Kc

Page 37: Lecture 8: Theory of Chemical Equilibria(I) · Chemical Equilibria reactant A→Bproduct • Two-state equilibria include: chemical isomerization; the folding of a protein from an

Statistical Mechanical Consideration

µi = Fi,N −F 0,N= −kT lnZi,NZ0,N

µi is the chemical potential of species i in a solution of N water molecules

is the free energy of solution with one molecule i and N water

is the free energy of solution with only N water

Fi,NF0,N

µ 0i = µi−kT lncic0= −kT ln ci

c0Zi,NZ0,N

= −kT lnV0

VZi,NZ0,N

We use the relation: ci =1/V c0 =1/V 0

ΔF 0 =cµ 0C + dµ0D − aµ

0A − bµ

0Bc=−kT ln[(Z

cC,NZ

dD,N

Z aA,NZ

bB,N

)(VZ0,NV 0 )a+b−c−d ]

is the partition function with one molecule I and N water

is the partition function of solution with only N water

Zi,NZ0,N