lab diagnosis of fungal infections, dr naveen reddy
TRANSCRIPT
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LAB DIAGNOSIS OF FUNGAL INFECTIONS
DR NAVEEN KUMARII MDS, OMFP
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CONTENTS• INTRODUCTION • CLASSIFICATION OF FUNGI• CLASSIFICATION OF FUNGAL DISEASES• COMMON ORAL INFECTIONS• LABORATORY DIAGNOSIS SPECIMEN COLLECTION AND TRANSPORT FUNGAL STAINING FUNGAL CULTURE GERM TUBE TEST SEROLOGICAL TESTS SKIN TESTS MOLECULAR TECHNIQUES ARTEFACTS• REFERENCES
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INTRODUCTION• Word Fungus• Mycology• Eukaryotic• Rigid cell wall• Cell membrane• yeast/molds• hypha• mycelium• Reproduction
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CLASSIFICATION OF FUNGI
Based on morphology1.Yeast2.Yeast-like3.Molds4.Dimorphic fungi
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CLASSIFICATION OF FUNGAL DISEASES
• Superficial mycoses• Subcutaneous mycoses• Systemic mycoses• Opportunistic mycoses
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COMMON ORAL INFECTIONS
• CANDIDIASIS• ASPERGILLOSIS• BLASTOMYCOSIS• COCCIDIOMYCOSIS• HISTOPLASMOSIS• MUCORMYCOSIS
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SPECIMEN COLLECTION AND TRANSPORT
Acc to Epstein and Pearsall et al. guidelines for specimen collection are • Specimen should be collected from active lesion.
Old burn out lesions don’t contain viable organisms • Specimen should be collected under aseptic
conditions • Collect sufficient specimen • Use sterile collection devices and containers • Specimen should be labelled appropriately
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Methods of specimen collection• Imprint• Swab• Impression• Oral rinse• Expectoration• Paper points• Smear
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FUNGAL STAINSWET PREPARATIONS
• KOH mount• India ink stain• Nigrosin stain• Calcoflour white stain• Lactophenol Cotton blue• Neutral RED stain
DIFFERENTIAL STAINS
• Grams stain• H and E stain• Giemsa• PAS• Gomori’s methamine stain• Acridine orange stain• Fluorescent antibody staining
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WET PREPARATIONS
KOH wet Mount
KOH 20 gGlycerol 120 mlDistilled water 80 ml
Dissolves protein debrisAddition of GlycerolSlide is placed underBrown walled hyphae and yeasts
Adv- Dis adv- Occasionally mixed with 10% KOH- Yeasts, hyphae & pseudohyphae are readily distinguished from background
CANDIDA
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INDIA INK STAIN(Negative stain)
India ink 150 mlMerthiolate 3mlTween 80 0.1 ml
Polysaccharide capsule repels opaque mediumDistinct halo
As it is a negative stain
Ink should be free from
NIGROSIN STAIN
Nigrosin granules 10gFormalin 100ml
Shelf life 1 yr Irregular, encapsulated, spherical yeast cells
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Calcofluor white stained Candida albicans showing true hyphae (*) and pseudohyphae (+).Citation: Journal of Oral Microbiology 2011, 3: 5771
Calcofluor White Stain
Calcofluor white 100mgEvans blue 50mgDistilled water 100ml
Water solubleSelectively binds to cellulose and chitin
Superior to KOH
Evans blue-↓non specific background florescence Light blue floresence
Long UV and short visibleLight source-Quartz halogen/mercury vapor lamp
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LACTOPHENOL COTTON BLUE
Lactic acid 20 mlGlycerol 40mlCotton blue 0.05gmDistilled water 20 mlPhenol 22ml
Stains outer wall of fungusMorphological features of fungal isolates
NEUTRAL RED STAIN Water soluble dyeThrough plasma membrane and stored in lysosome
Evaluation of Viability
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DIFFERENTIAL STAINSGrams stain
Crystal violetGrams iodineAcetone/95%ethanol0.5%safronine
Gram positive
Take up crystal Violet Yeasts –more darker
Well stained morphology
CANDIDA
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CRYPTOCOCCUS
H&E
Hematoxyllin 5gEthyl alcohol 50ml alum 100geosin 1%
Does not disclose and distinguish fungal elements easily small numbers-not locatedHost response
RBC-OrangeCollagen, nerve ,amyloid-pinkMuscle, elastin , fibrin-bright redNuclei, RNA, Ca salts, bacteria-blue
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GIEMSACompound stain-methylene blue and eosinIntracellular yeast cells
Nuclei-purpleCytoplasm-blueRBC-Pink
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ORAL AND MAXILLOFACIAL PATHOLOGY Neville 2nd edition
Candida-Tubular hyphae in parakeratin layer
PAS STAIN 1% Aqueous periodic acidBasic fuschin 1gSod.meta bi sulphate 2gConc.HCL 2ml
Nuceli -blueFungi-magenta red
For better result -
Candida-Tubular fungal hyphae and ovoid yeasts
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GOMORI-METHENAMINC SILVER STAIN
Methanamic silver nitrate solutionDistilled water 50 mlChromic acid 5%Sodium thiosulphateAlcohol,xylene,Gold chloride
Tendolakar & colleagues
Deposition of reduced silver
Fungi- brown to blackMucopolysaccharide-dark greyTissue-pale green
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FLUORESCENT ANTIBODY STAININGTissue section or pus where organism is scanty(systemic infections)Detects fungal antigen in smear and section Antibody coated fungi can be demonstrated
ACRIDINE ORANGEAffinity for nucleic acids-RNA,DNABacteria and yeast – bright orange WBC- pale apple greenRBC- may not stain or stain pale green
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FUNGAL CULTURE
• Basal Media• Nutritional deficient media• Enriched and selective media• Differential agar media• Media for stimulation of Ascospores• Media used for biochemical tests
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Basal MediaSABOURAUD DEXTROSE AGAR /SGA
pH -5.6
Peptone 10gDextrose 40gAgar 20gDistilled water 1000ml
Commonly usedPrimary isolation
NEUTRAL SDA
pH-6.8-7
neopeptone 10gDextrose 20gAgar 20gDistilled water 1000ml
SDA+ANTIBIOTICS SDA+Cycloheximide 500mgChloramphenicol 50mgGentamicin 20mg
Avoid bacterial contamination
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CANDIDA
ASPERGILLOSIS-,dryPowdery colonies
BLASTOMYCOSIS-wavy
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Nutritional deficient mediaCORN MEAL AGAR/CORN MEAL TWEEN AGAR
Corn meal 8g/zein 40g/100mlTween80 2gAgar 4gDistilled water 200mlLarge,highly refractile,thick walled
RICE STARCH AGAR(RSA) Cream of rice 4gTween80 2gAgar 4gDistilled water 200mlpH 6.2
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BLOOD AGAR
Agar base 40gSheep blood 50mlDistilled water 1000ml
Histoplasma capsulatumBlastomyces dermatitidesCryptococcus neoformans
Candida-moist opaque colonies
BRAIN HEART INFUSION AGAR
Brain heart infusion 37gGlucose 20gL-cysteine HCL 1gAgar 20gDistilled water 900g
AntibioticspH 6.7
Enriched and selective media
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BIRD SEED AGAR/NIGER SEED AGAR
CHOCLATE AGAR
Niger seed extract 200 mlGlucose 1gChloramphenicol 400mgGentamicin 25mgDiphenyl solution 10mlAgar 20gDistilled water 800 ml
Primary isolation of Crytococcus neoformans
Candida appear as – yellow white colonies
Sun flower seed agarPAL ‘S MEDIUM
Pulverised sunflower seed 45gChloramphenicol 100mgAgar 20 gDistilled water 1000ml
Cryptococcus neoformansLight to dark brown colored colonies
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Czapek-Dox agar
NaNO33gK2HPO41GKCL 0.5GMgSO4.7h20 0.5gFeSO4.7H20.01GSucrose 30gAgar 15gDistilled water 1000 ml
Aspergillus sps
Granular flat coloniesRadial grooves
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CHROMAGAR
Ph-
Presumptive identificationDirect detection of enzymatic activityFluorochromes are addedMultiple species in a specimen
C.albicans –light greenC.tropicalis-blue,pink haloC.Parapsilosis-creamC.Krusei-pinkC.Glabrata-purpleC.dubliensis-dark blue
Differential media
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Biggy agar :Bismuth sulfite, glucose, glycine
c. albicans-c. krusei-c. tropicalis-
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Pagano Levin agar• Peptic digest – 10g/l, yeast extract – 1
gm, dextrose- 40gm, agar- 15gm• Ph- 6.2• Distinguishes candida sps based on
ability to reduce triphenyl tetrazolium chloride
• C. albicans- cream to light pink• C.parapsilosis- red to maroon• C.tropicalis – red to marron• C. krusei – white to cream spreading
type of colonies
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Media used for biochemical testsTETRAZOLIUM REDUCTION MEDIUM
Peptone 1gGlucose 4gBeef extract 0.1gTetrazolium 20mgNeomycin 50mgDistilled water 100mlpH5.6-6.2
Tetrazolium is reduced in diferent gradients
C.albicans –pale pinkC.tropicalis –orange pinkC.Parapsilosis-rose pinkC.Krusei-pink,dryC.Glabrata-pale pink
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Carbohydrate assimilation Media
Sugar disk 4%KNO3 disk 1%Yeast nitrogen base1.17%Yeast carbon base 6.7%
Carbohydrate free mediumFilter paper disksGrowth around discUtilization is determined
Carbohydrate fermentation test can be
UREASE TEST Urea base 29gAgar 15gDistilled water 1000 mlPhenol red indicator
Ability to produce urease enzyme
Urea to ammoniaAmber to pinkish redCryptococcus urease +veCandida urease –ve
Rapid urease test Christensen urea base1% benzalkonium chloride
Urea to ammoniaYellow to purple Cryptococcus
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GERM TUBE TEST
• Presumptive identification of candida albicans
• Reynaulds-braude phenomenon• 5%-C.albicans negative, false
positives• Additional tests• Human/sheep serum, incubated
2 hrs• Long tube like process
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Monoclonal antibodies(MAB) are developed against mycelial cell wall protein.
They react specifically in gel immunodiffusion test. Intraspecies antigenic relation ship can be elucidated
FUNGI SPECIFIC ANTIGEN
H.capsulatum H,M
B.dermatitidis A
SEROLOGICAL TESTS
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Skin tests• Exposure and sensitization of individual to organism• Fungal antigen injectedhypersensitivity reactions • Epidemiological studies • Histoplasmosis, Candidiasis, Coccidioidomycosis, Blastomycosis.• Aspergillus-false positive results
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•PCR –genome DNA is amplified and sequence typing is done•Shorter period •Genetic markersRFLP (or Restriction fragment length polymorphism)AFLP (or Amplified fragment length polymorphism)
MOLECULAR TECHNIQUES
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ARTEFACTS
• KOH-crystals• pollen, wbc, glove powder, fabric-fungi• silver stained elastin
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REFERENCES A TEXT BOOK OF MEDICAL MYCOLOGY- Jagadish Chander ESSENTIALS OF MEDICAL MICROBIOLOGY- Apurba Sankar Sastry ESSENTIAL MICROBIOLOGY FOR DENTISTRY- L.Samaranayake 3rd edition ORAL AND MAXILLOFACIAL PATHOLOGY- Neville 2nd edition COLOR ATLAS AND TEXT BOOK OF DIAGNOSTIC MICROBIOLOGY- Konemann 6th
edition PATHOGENESIS AND TREATMENT OF ORAL CANDIDOSIS- Journal of Oral
Microbiology 2011 David W ,Michael L FUNGAL INFECTIONS OF THE ORAL MUCOSA- Indian Journal of Dental Research,
23(5), 2012 Anitha Krishnan P COLLECTION OF SPECIMENS/SWABS- CTEL 2007 Val dimmock INTERNET ACCESS