kumar-ricker-poster-mesa_2013_v2
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Embryonic stem cells (ESCs) possess the capacity to differentiate into multiple cell types and to proliferate indefinitely. Locus-specific modifications of histones participate in the epigenetic regulation of genes involved in cell growth, differentiation and cell fate. Histone H3 lysine 18 acetylation (H3K18ac) plays a major role in cell cycle as it is abundant in growth-arrested cells and lost in cancer3,4,5. Furthermore, in growth-arrested cells, depletion of H3K18ac is sufficient to trigger re-entry into the cell cycle1,2. The H3K18ac-modification is produced by at least four lysine acetyltransferases including p300, CBP, PCAF and GCN5. Genetic studies targeting individual lysine acetyltransferases in mouse indicate redundancy between these enzymes, e.g. p300 and CBP and possible roles in early development, e.g. Gcn5 in mesoderm formation. These studies and others suggest that through H3K18ac, these enzymes may play a major role in the epigenetic control of cell identity. In this study, we found that H3K18ac is highly enriched at stem cell determining loci in ESC and investigate the developmental consequence of H3K18ac dependency on ESC identity and pluripotency.
RESULTS
RESULTS (continued) RESULTS (continued)
REFERENCES
ACKNOWLEDGEMENTS This work was supported by generous grants from the California Institute for Regenerative Medicine RN2-00908, and institutional funds to B.D.Y..
Division of Dermatology, Department of Medicine, Stem Cell Program, and Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Shantanu Kumar, Craig Ricker and Benjamin D. Yu
Functional role of histone H3 lysine 18 acetylation in the maintenance of pluripotency in embryonic stem cells
CONCLUSION We demonstrated that upon global reduction of H3K18ac by E1A oncoprotein, mESCs lose characteristics associated with pluripotency and fail to activate enhancers that are associated with stem cell identity. Lineage markers of neuroectoderm and endoderm were also suppressed by E1A suggesting a functional role of H3K18ac in lineage specifications. Loss of pluripotency by E1A requires binding to H3K18 acetyltransferases, P300/CBP, but does not require pRB- and P400-family interaction.
Fig. 3. Loss of pluripotency in mESCs expressing E1A (A), Bright field image of mES cells infected with control Ad and Ad E1A (B), Alkaline phosphatase (AP) staining of mESCs infected with control and Ad E1A (C), Immunofluorescence for Oct3/4 and E1a expression in MESCs 72h post transduction. Oct3/4, red; E1a, green (D), RT-qPCR measuring mRNA levels of pluripotency markers in MESCs expressing E1A relative to control. Data are represented as mean ± SD
Fig. 5. Change in expression of differentiation markers in mESCs cells expressing E1A (A), RT-qPCR measuring mRNA levels of differentiation markers in MESCs expressing E1a relative to control at 24, 48 and 72 hr post transduction. Data are represented as mean ± SD
C E1A
C E1A
E1A Protein Levels
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H3K18ac
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Ratio of H3K18ac / Total H3
Ad Control Ad E1A
Loss of pluripotency in mESCs expressing E1A
Figure 1. H3K18ac occupancy in hESCs and derived germ layers. (A) ChIP-seq occupancy for H3K18ac over POU5F1, SOX2, KLF4 and NANOG (B) Distribution of ChIP-seq signal near TSS comparing global analysis of ESC Specific (Top 2% H1 ESC vs. H1 EB) and differentiation specific genes (Bottom 2%). (C) Box-plot for differences in H3K18ac ChIP-seq density in hESCs and derived germ layers comparing ESC genes. We found decreasing enrichment of the ESC related genes in progressively more differentiated cell types. P-values (<2.2e-16), calculated using two-tailed t-test. ChIP-seq data based on Xie et al. (2013)
Figure 2. Depletion of H3K18ac by E1A oncoprotein in mESCs. (A) Immunofluorescence for E1a expression in mES cells 24h post transduction. (B), Flow cytometry analysis for E1a expression. (C), Western blot analysis for H3K18ac expression at various time point post Ad control, Ad R2G(Ad mutant does not bind p300/CBP) and Ad E1A transduction (D), CHIP-qRT PCR for H3K18ac occupancy on pluripotency genes promoters.
Depletion of H3K18ac by Adenovirus E1A oncoprotein
H3K18Ac occupancy in hESCs and derived germ layers
Loss of enhancer activity activity in mESCs expressing E1A
Figure 4. Loss of enhancer reporter in mESCs expressing E1A (A), mESCs expressing EOS-GFP reporter and loss of GFP expression after differentiation (B), Fluorescence and Bright field image of mESCs-EOS reporter cell line transduced with control and Ad E1a 72h post transduction.
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Pax6 Notch BraT PECAM1 Gata4 Foxa2 Gata6
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E1A-72h
Effect of E1A on lineage differentiation
1. Horwitz, G.A. et al. Adenovirus small e1a alters global patterns of histone modification. Science 321, 1084-1085 (2008).
2. Ferrari, R. et al. Epigenetic reprogramming by adenovirus e1a. Science 321, 1086-1088 (2008).
3. Barber, M.F. et al. SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation. Nature 487, 114-118 (2012).
4. Seligson, D.B. et al. Global histone modification patterns predict risk of prostate cancer recurrence. Nature 435, 1262-1266 (2005).
5. Pasqualucci L. et al. Inactivating mutations of acetyltransferases genes in B-cell lymphoma. Nature 471, 189-95 (2011)
6. Xie W.et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell 153, 1134-48 (2013)
INTRODUCTION
EOS-GFP -LIF (5D) -LIF +RA (4D)
Control E1A
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Bra Gsc Evx1 Eomes fgf-8 cdx2
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RESULTS (continued)
H1 ESC
H1-derived mesendoderm
(ME)
H1-derived neural (NE)
H1-derived mesoderm
(MES)
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B
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A B
C D
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Fig. 6. Loss of pluripotency requires E1A to bind p300/CBP (A) Schematics of E1A and their mutants. (B) Flow cytometer analysis of E1A and their mutants expression in mESCs (C) phase contrasts image of mESCs expressing E1A and their mutants, 72h post transduction.
Loss of pluripotency requires E1A to bind p300/CBP
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Top 2% Bot 2% All
T Gsc Evx1 Eomes Fgf8 Cdx2