integration of environmental, social and health data using gis: lessons learned from three disease...
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Integration of environmental, social and health data using GIS: Lessons learned from three disease outbreaks investigations in rural areas
Christovam Barcellos Walter RamalhoWaneska Alves
Brazilian Health Ministry
Objectives
• 3 Outbreak investigations
• Structure of Brazilian health
surveillance system
• Low cost alternatives for data
acquisition and analysis
Leishmaniosis outbreak
• Rural settlement since 1998• 706 inhabitants• Family farm• 70 suspected cases during 2002
Outbreak dimensions
• Total population: 706
• Number of cases: 20
• Households with cases: 16
• Attack rate: 3%
Settlement characteristics
Subtropical climate
Recent provisonary settlementLandless Workers' Movement (MST)
Close contact with animals(dogs, chicken, pig)
Proximity to forest (rain forest and riparian vegetation)(use of wood and hunting)
Methodology
Mapping and questionnaire
Case location and habits characterization
Interactions people and environment
Pavlovski, 1939, theory of natural nidality of transmissible diseases
GIS was employed to
• Characterize local landscape
(RS)
• Measure distance between
houses and suspected risk
sources
• Identify clusters of disease
(spatial statistics)
Clusters of disease
Dual kernel rate smoothing
Primary layer: households with cases
Secondary layer: All households
Red – households with casesYellow – households without cases
Investigation participants and partners
Brazilian Health Ministry
Paraná State Health Secretary (SES)
Mariluz Municipal Health Secretary (SMS)
Research Institutes (Fiocruz, Brasilia University, Maringá University)
Landless Workers' Movement (MST)
Waterborne Toxoplasmosis, Brazil
• Unusual acute toxoplasmosis cases in an urban area• Mapping the city water supply system • Residence location used as a proxy of exposure
Waterborne Toxoplasmosis, BrazilMoura et al. (2006) Emerging Infectious Diseases, CDC
Santa Isabel do Ivai
138 (88%) of cases lived in the area served by reservoir A and 17 individuals lived in area served
by reservoir B
Water reservoir contamination by cat faeces
Henkes, 2004
Hantavirosis transmission foci identification Rio Grande do Sul
• Hantavirus Pulmonary Syndrome (HPS) is a disease of increasing incidence in Rio Grande do Sul state• The spatial distribution of cases is apparently scattered in the state • The aim of spatial analysis was to investigate the role of agriculture activities and changing ecosystem in the virus transmission Case location > Transmission pattern identification > Preventive
measures
Henkes, 2004
Hantavirosis transmission foci identification Rio Grande do Sul
The majority of cases occurred during spring, in highland areas dominated by secondary vegetation and agricultural activity
An example of mapping and deciding in a regional level
Ministry of Health (National)
Ministry of Health (National)
State Health Secretary (State)
State Health Secretary (State)
Local Health Secretary (Municipality)
Local Health Secretary (Municipality)
Other institutionsOther institutionsBasic Health Care
Service (local)
Basic Health Care Service (local)
Information flux and Health Surveillance Network
Case diagnostic and notification
Primary epidemiological investigation
Data consolidation and analysisLaboratory confirmation
Epidemiological investigation and technical support
• Highly hierarchical (different roles in each level)• Decentralized (present in all municipalities)• Unequal (different capabilities and resources)
Health information systemsLive newborn Information system – SINASC
National Disease Notification System – SINAN
Mortality Information system – SIM
Hospital Information system – SIH
Plenty of dataBut... Poor quality, Incomplete coverageLow capacity to analysis
National disease surveillance
Imediate notification of:
Suspected or confirmed case of: Botulism, Carbuncle or Anthrax, Cholera, Yellow Fever, West Nile Fever, Hantavirus, Human Influenza by a new sub-type, Plague, Poliomyelitis, Human Rabies, Measles, Acute Icterohemorrhagic Fever, SARS, Smallpox and Tularemia
Outbreak or clustering of cases or deaths by: Unusual aggravations (unknown disease or epidemiologic changes in known diseases), Diphtheria, Acute Chagas Disease, Meningococcal Disease
Epizootic and/or death of animals that could precede the occurrence of diseases in humans: Epizootic in non-human primates, other epizootics of epidemiologic importance
GIS and RS demands for Public Health
Peopleware (Courses)
Software (Free and open)
Dataware (Health, population and cartographical data)
Technological and methodological development
RIPSA, 2003
TerraReads images and shapefiles, several spatial analysis tools.
TabwinCalculates health indicators and produces simple thematic maps
Brazilian free (and user-friendly) programs
Other available programs
Coordenadas do centro do aglomerado
Raio de 1 km
Available satellite images
Embrapa: Composed Landsat-TM bands 3, 4 and 5INPE: Raw and classified CBERS images
A long and winding road…
Investigation
Field workGeocoding
Gathering data
Spatial analysis
Analysis
Interpretation
• What kind of data we need? Where are them?• Which objects must be mapped and how to georeference data?• What kind of statistics do we use? Which software?
The agricultural activities provide intensive contact with the virus. The degradation of naturally forested areas and the invasion of intensive agriculture practices alter the habitat of rodents, increasing food availability due to grain storage.
Alarm Knowledge
Necessities
Free data and softwareAll data used are free and available
Decentralized and coordinated
actionsOutbreaks are detected, investigated and
followed by local health authorities, supported by
a national task force and accompanied by NGO
Theory-driven investigationsInstead of technology-driven