how can we streamline influenza virus purification?,how can we streamline … · 2020. 7. 20. ·...

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How Can We Streamline Influenza Virus Purification? Aleksandar Cvetkovic 1 , René Gantier 1 and Annelies Onraedt 2 1 Pall Life Sciences, Westborough, MA, USA; 2 Pall International Sàrl, Fribourg, Switzerland INTRODUCTION Apart from their current application in viral vaccines, nanoparticle-based entities such as viruses and non-infectious virus-like particles are holding great promise in a myriad of clinical targets, including cancer, cystic fibrosis, Alzheimer’s, Perkins’s, haemophilia and HIV/AIDs. Virus production processes (Figure 1) have been evolving on the upstream side, moving from chicken eggs in more reliable and controlled cell lines. The challenge for virus production processes is now downstream on the development of better virus purification processes to meet ever increasing regulatory expectations in regards to contaminant removal, including host cell DNA and host cell protein (HCP) while mitigating high cost pressures. Scope of the work was to develop a streamlined virus manufacturing process, by using Mustang ® Q ion exchange membrane chromatography. The selection of bind/elute conditions was done by high-throughput screening (HTS) using 96-well plates. Selected conditions were then transferred to a Mustang Q XT Acrodisc ® device. CURRENT VIRUS PRODUCTION PROCESSES Figure 1 Schematic representation of current and proposed virus production process CONCLUSION: FLEXIBLE STREAMLINED VIRUS PRODUCTION Mustang Q XT ion exchange chromatography is a valuable alternative for the purification of influenza virus, and by extension for other viruses, from clarified cell culture feedstock Allows for faster, simpler and economical processing EXPERIMENTAL STRATEGY MEMBRANE CHROMATOGRAPHY © 2014, Pall Corporation. Pall, , Acrodisc, AcroPrep, Mustang and Seitz are trademarks of Pall Corporation. ® indicates a trademark registered in the USA. Minitab is a trademark of Minitab, Inc. PicroGreen is a trademark of Invitrogen. 7/14, GN14.9442 Contact: +800.717.7255 (USA) • +41 (0)26 350 53 00 (Europe) • +65 6389 6500 (Asia/Pacific) • E-mail: [email protected] • Web: www.pall.com/biopharm Feed solution: Influenza virus A/Puerto Rico/8/1934 (H1N1) cultured in HEK-293 suspension cells. Clarified using a Pall Seitz ® P series depth filter V100P 8 0 0.001 0.002 0.003 0.004 0.005 0.006 AU Min 9 10 11 12 13 14 1. Design of Experiment (DoE) • Critical parameters (loading and elution conditions) • Quality attributes (virus yield, HCP, DNA) • AcroPrep Advance Filter Plates • Vacuum manifold • Virus detection (HA assay) • HCP quantification (ELISA) • DNA (PicoGreen assay) 3. Analytical Testing 2. Screening on 96-Well Plates 4. Result Analysis • Design space for optimum performances 5. Transfer to Mustang Q XT Acrodisc Device Buffer Sorbent bed Filter plate 7.0 Load pH Elution pH 5.0 4.8 4.6 4.4 4.2 4.0 8.5 8.0 7.5 6.5 6.0 5.5 5.0 HCP (ppm) 150-200 200-250 250-300 300-350 Load pH Elution pH Elution Cond SELECTION OF BIND/ELUTE CONDITIONS USING HTS Conditions for bind/elute Binding Elution pH 6.8 5.8 Conductivity (mS/cm) 6.2 55.6 HA units per well 85.9 Non Applicable • Comparing streamlined process in full single-use mode with standard re-use process • 40 batches/year, 120 M doses/year • DSP yield constant at 46% • BioSolve Software Model Annual CoGs reduced due to lower CAPEX and elimination of 1 purification step Additional 10-fold reduction in water consumption PROCESS ECONOMICS 0 2 4 6 Capital Materials Consumables Labour Other Annual CoGs Million USD Standard -14% +28% -11% Streamlined -63% Excellent HCP (binding) and DNA (elution) clearance at elevated conductivity DBC in range of 1011 virus particles per mL of membrane DBC and virus recovery controlled by virus and DNA content in load: Improvement of elution yield could jeopardize DNA clearance pH Conductivity (mS/cm) Conductivity (mS/cm) Virus binding yield (%) Contour Plot of Virus Binding Yield > < 90 95 95 99 99 1 1 15 15 30 30 40 40 50 50 60 60 70 70 80 80 90 HCP content in FT (%) Contour Plot of HCP Content in FT pH 8 7 6 5 4 pH 7 8 6 5 4 15.0 12.5 10.0 7.5 5.0 Conductivity (mS/cm) 15.0 12.5 10.0 7.5 5.0 Conductivity (mS/cm) 15.0 12.5 10.0 7.5 5.0 > < 1,200,000 1,000,000 1,000,000 1,030,000 1,030,000 1,060,000 1,060,000 1,080,000 1,080,000 1,100,000 1,100,000 1,120,000 1,120,000 1,140,000 1,140,000 1,170,000 1,170,000 1,200,000 DBC (HA units/mL) Contour Plot of DBC 8 7 6 5 4 15.0 12.5 10.0 7.5 5.0 95 100 HCP content in FT (%) 1.12e+006 2e+006 DBC (HA units/mL) 99 100 Virus binding yield (%) Sweet Spot > < 99 1 1 50 50 80 80 90 90 92 92 94 94 96 96 98 98 99 pH 7 8 6 5 4 Open pore structure with direct access to ion exchange binding sites allow higher flow rates Higher binding capacities for larger molecules Ready-to-use devices Reduced hardware investment and validation cost TRANSFER TO SCALABLE DEVICE Virus DNA HCP DBC, Recovery, Clearance, Clearance, Productivity, Particle/mL % % % particle/hr/L 9 x 10 11 75.1 99.9 95 2 x 10 14 Data obtained on Mustang Q XT Acrodisc Units with the conditions defined by HTS study AcroPrep Advance XT Acrodisc Filter Plates Units XT5 XT140 XT5000 14 μL membrane 0.86 mL 5 mL 140 mL 5000 mL per 1 mL well Conditions selected on 96-well plate in the HTS provide excellent results for virus DBC and purity on XT Acrodisc unit with Mustang Q membrane Virus DBC in the upper 1011 range Good recovery of ~75 % with excellent DNA and HCP (>95%) clearance and process productivity Results from Minitab analysis Binding Elution Virus yield /recovery (%) Non Applicable 90.8 HCP removal (%) >99.5 >99.8 DNA removal (%) 0 >99.7

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  • How Can We Streamline Influenza Virus Purification?Aleksandar Cvetkovic1, René Gantier1 and Annelies Onraedt2

    1Pall Life Sciences, Westborough, MA, USA; 2Pall International Sàrl, Fribourg, Switzerland

    INTRODUCTION

    Apart from their current application in viral vaccines, nanoparticle-based entities such as viruses and non-infectious virus-like particles are holding great promise in a myriad of clinical targets, including cancer, cystic fibrosis, Alzheimer’s, Perkins’s, haemophiliaand HIV/AIDs. Virus production processes (Figure 1) have been evolving on the upstream side, moving from chicken eggs in more reliable and controlled cell lines. The challenge for virus production processes is now downstream on the development ofbetter virus purification processes to meet ever increasing regulatory expectations in regards to contaminant removal, including host cell DNA and host cell protein (HCP) while mitigating high cost pressures. Scope of the work was to develop a streamlined virus manufacturing process, by using Mustang® Q ion exchange membrane chromatography. The selection of bind/elute conditions was done by high-throughput screening (HTS) using 96-well plates.Selected conditions were then transferred to a Mustang Q XT Acrodisc® device.

    CURRENT VIRUS PRODUCTION PROCESSES

    Figure 1Schematic representation of current and proposed virus production process

    CONCLUSION: FLEXIBLE STREAMLINED VIRUS PRODUCTION

    Mustang Q XT ion exchange chromatographyis a valuable alternative for the purification ofinfluenza virus, and by extension for otherviruses, from clarified cell culture feedstock

    Allows for faster, simpler and economicalprocessing

    EXPERIMENTAL STRATEGY

    MEMBRANE CHROMATOGRAPHY

    © 2014, Pall Corporation. Pall, , Acrodisc, AcroPrep, Mustang and Seitz are trademarks of Pall Corporation. ® indicates a trademark registered in the USA.� Minitab is a trademark of Minitab, Inc. PicroGreen is a trademark of Invitrogen. 7/14, GN14.9442

    Contact: +800.717.7255 (USA) • +41 (0)26 350 53 00 (Europe) • +65 6389 6500 (Asia/Pacific) • E-mail: [email protected] • Web: www.pall.com/biopharm

    Feed solution:Influenza virus A/Puerto Rico/8/1934 (H1N1) cultured in HEK-293 suspension cells. Clarifiedusing a Pall Seitz® P series depth filter V100P

    80

    0.001

    0.002

    0.003

    0.004

    0.005

    0.006

    AU

    Min9 10 11 12 13 14

    1. Design of Experiment (DoE)• Critical parameters (loading and elution conditions)• Quality attributes (virus yield, HCP, DNA)

    • AcroPrep™ Advance Filter Plates• Vacuum manifold

    • Virus detection (HA assay)• HCP quantification (ELISA)• DNA (PicoGreenu assay)

    3. Analytical Testing

    2. Screening on 96-Well Plates

    4. Result Analysis• Design space for optimum performances

    5. Transfer to Mustang Q XT Acrodisc Device

    Buffer

    Sorbent bedFilter plate

    7.0

    Load pH

    Elut

    ion

    pH

    5.04.84.64.44.24.0

    8.5

    8.0

    7.5

    6.5

    6.0

    5.5

    5.0

    HCP (ppm)

    150-200

    200-250

    250-300

    300-350

    Load

    pH

    Elution pH

    Elut

    ion

    Cond

    SELECTION OF BIND/ELUTE CONDITIONS USING HTS

    Conditions for bind/elute Binding ElutionpH 6.8 5.8Conductivity (mS/cm) 6.2 55.6HA units per well 85.9 Non Applicable

    • Comparing streamlined process in full single-use mode with standardre-use process

    • 40 batches/year, 120 M doses/year

    • DSP yield constant at 46%

    • BioSolve Software Model

    Annual CoGs reduced due to lower CAPEX and eliminationof 1 purification step

    Additional 10-fold reduction in water consumption

    PROCESS ECONOMICS

    0 2 4 6

    Capital

    Materials

    Consumables

    Labour

    Other

    Annual CoGs

    Million USDStandard

    -14%

    +28%

    -11%

    Streamlined

    -63%

    Excellent HCP (binding) and DNA (elution)clearance at elevated conductivity

    DBC in range of 1011 virus particles per mL of membrane

    DBC and virus recovery controlled by virus and DNA content in load: Improvement of elution yield could jeopardize DNA clearance

    pH

    Con

    duct

    ivity

    (mS/

    cm)

    Con

    duct

    ivity

    (mS/

    cm)

    Virus binding yield (%)

    Contour Plot of Virus Binding Yield

    > – – – – – – – – – – <

    90 95 95 99

    99

    1 1 15

    15 30 30 40 40 50 50 60 60 70 70 80 80 90

    HCP content in FT (%)

    Contour Plot of HCP Content in FT

    pH8 7 6 5 4

    pH7 8 6 5 4

    15.0

    12.5

    10.0

    7.5

    5.0

    Con

    duct

    ivity

    (mS/

    cm)

    15.0

    12.5

    10.0

    7.5

    5.0

    Con

    duct

    ivity

    (mS/

    cm)

    15.0

    12.5

    10.0

    7.5

    5.0

    > – – – – – – – – <

    1,200,000

    1,000,000 1,000,000 1,030,000 1,030,000 1,060,000 1,060,000 1,080,000 1,080,000 1,100,000 1,100,000 1,120,000 1,120,000 1,140,000 1,140,000 1,170,000 1,170,000 1,200,000

    DBC (HA units/mL)

    Contour Plot of DBC

    8 7 6 5 4

    15.0

    12.5

    10.0

    7.5

    5.0

    95 100

    HCP content in FT (%)

    1.12e+006 2e+006

    DBC (HA units/mL)

    99 100

    Virus binding yield (%)

    Sweet Spot

    > – – – – – – – – <

    99

    1 1 50

    50 80 80 90 90 92 92 94 94 96 96 98 98 99

    pH7 8 6 5 4

    Open pore structure with direct access to ion exchange binding sites allow higher flow rates

    Higher binding capacities for largermolecules

    Ready-to-use devices

    Reduced hardware investment andvalidation cost

    TRANSFER TO SCALABLE DEVICE

    Virus DNA HCP DBC, Recovery, Clearance, Clearance, Productivity, Particle/mL % % % particle/hr/L9 x 1011 75.1 99.9 95 2 x 1014

    Data obtained on Mustang Q XT Acrodisc Units with the conditions definedby HTS s tudy

    AcroPrep™ Advance XT Acrodisc Filter Plates Units XT5 XT140 XT500014 µL membrane 0.86 mL 5 mL 140 mL 5000 mLper 1 mL well

    Conditions selected on 96-well plate in the HTS provide excellent results for virus DBC and purity on XT Acrodisc unitwith Mustang Q membrane

    Virus DBC in the upper 1011 range

    Good recovery of ~75 % with excellent DNA and HCP (>95%) clearance and process productivity

    Results from Minitab� analysis Binding ElutionVirus yield /recovery (%) Non Applicable 90.8HCP removal (%) >99.5 >99.8DNA removal (%) 0 >99.7