genome visualization challenges
TRANSCRIPT
Addressing future challenges for visualising genomic dataAlberto Labarga – Dec 2015Addressing future challenges for visualising genomic dataAlberto Labarga – Dec 2015
Comparative genomics
Comparative genomics
Sequence (DNA/RNA) & phylogeny
Sequence (DNA/RNA) & phylogeny
Regulation of gene expression; transcription
factors & micro RNAs
Regulation of gene expression; transcription
factors & micro RNAs
Protein sequence analysis &evolution
Protein sequence analysis &evolution
Protein families, motifs and domains
Protein families, motifs and domains
Protein structure & function: computational crystallography
Protein structure & function: computational crystallography
Protein interactions & complexes: modelling and predictionProtein interactions & complexes: modelling and prediction
Chemical biologyChemical biology
Pathway analysisPathway analysis
Systems modelling
Systems modelling
Image analysisImage analysis
Data integration & literature miningData integration & literature mining
Service that make it easy to find data from a range of secondary data sources, then consume the data in a usable and unified format. Several of these services are trying to create marketplaces for data, envisioning that data providers can offer their data sets for sale to data seekers
Chr5: 133,876,119 – 134,876,119
Genes
Transcription
Mouse orthology
TF bindingHistone mods
SNPs
Repeats
Density of biological information in the human genome