ftiri provides a “chemical photograph” in thin sections of tissue the tissue must be...

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FTIR Imaging - Introduction •FTIRI provides a “chemical photograph” in thin sections of tissue •The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2 um for bone, 2-5 for cartilage, skin and tendon. •The process is non-destructive in that there are no dyes or other treatments, thus the thin sections can be reused for other applications. •This tutorial will describe parameters validated for bone and dentin and provides examples of the types of questions that might be asked. •For other applications please contact the core technician or director.

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Page 1: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

FTIR Imaging - Introduction

•FTIRI provides a “chemical photograph” in thin sections of tissue

•The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2 um for bone, 2-5 for cartilage, skin and tendon.

•The process is non-destructive in that there are no dyes or other treatments, thus the thin sections can be reused for other applications.

•This tutorial will describe parameters validated for bone and dentin and provides examples of the types of questions that might be asked.

•For other applications please contact the core technician or director.

Page 2: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

PMMA

AMIDE IAMIDE II

PO 43-

1700 1600 1500 1400 1300 1200 1100 1000 1700 1600 1500 1400 1300 1200 1100 1000

Wavenumber (cm-1)

1a

1b

0

1.000

2.000

3.000

4.000

5.000

1c

0

0.2000

0.4000

0.6000

0.8000

1.000

1d

4.75.87.08.19.210.4 11.6

Wt % CO2-

0.150.170.190.210.230.250.270.290.310.330.350.370.390.41

3Mineral Mineral:Matrix

CrystallinityCarbonate

Chemical Photography of Bone Composition

CO3=

PMMA

AMIDE IAMIDE II

PO 43-

1700 1600 1500 1400 1300 1200 1100 1000 1700 1600 1500 1400 1300 1200 1100 1000

Wavenumber (cm-1)

CO3=

Page 3: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

PMMA

AMIDE IAMIDE II

PO 43-

1700 1600 1500 1400 1300 1200 1100 1000 1700 1600 1500 1400 1300 1200 1100 1000

Wavenumber (cm-1)

1a

1b

0

1.000

2.000

3.000

4.000

5.000

1c

0

0.2000

0.4000

0.6000

0.8000

1.000

1d

4.75.87.08.19.210.4 11.6

Wt % CO2-

0.150.170.190.210.230.250.270.290.310.330.350.370.390.41

3Mineral Mineral:Matrix

CrystallinityCarbonate

Chemical Photography of Bone Composition

CO3=

PMMA

AMIDE IAMIDE II

PO 43-

1700 1600 1500 1400 1300 1200 1100 1000 1700 1600 1500 1400 1300 1200 1100 1000

Wavenumber (cm-1)

CO3=

Lipids Sugars

Page 4: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

First Report 1998Cell Mol Biol (Noisy-le-grand). 1998 Feb;44(1):109-15.Infrared microspectroscopic imaging of biomineralized tissues using a mercury-cadmium-telluride focal-plane array detector.Marcott C, Reeder RC, Paschalis EP, Tatakis DN, Boskey AL, Mendelsohn R.AbstractA 64 x 64 mercury-cadmium-telluride focal-plane array detector attached to a Fourier transform infrared microscope was used to spectroscopically image 5 microm sections of canine alveolar bone tissue in the fingerprint region of the infrared spectrum. By ratioing the relative intensities of specific bands across the images, it is possible to obtain spatial distributions of the mineral-to-matrix ratio and mineral maturity as a function of distance from an osteon.

Page 5: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Validated FTIRI Parameters

Page 6: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Mineral:Matrix Ratio

FTIR mineral:matrix ratio correlates with ash fraction

0 10 20 30 40 50 60

Spectroscopic Mineral:Matrix Ratio

0.00

0.20

0.40

0.60

0.80

1.00

Fra

cti

on

al

As

h W

eig

ht

r2 = 0.83p < 0.05

Mineral:Matrix Ratio is Linearly Related to

Ash Weight (Mineral Content)

FTIR Mineral:Matrix Ratio

Ash

Fra

cti

on

Page 7: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Mineral Crystallinity

FTIR crystallinity correlates with c-axis length assessed by x-ray diffraction

1030:1020 Peak Area Ratio Reflects Crystal Size

0.50 1.00 1.50 2.00 2.50 3.00

1030/1020 Area Ratio

130

140

150

160

170

180

c-A

xis

Th

ickn

ess (

A)

R2=0.98

FTIR Crystallinity

c-a

xis

dim

en

sio

n

(Ǻ)

Page 8: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Carbonate:Phosphate Ratio Validated

Chemically

Magne et al., Bone, 2001

Page 9: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Collagen Maturity (XLR)

Paschalis et al., Bone, 2011

Whole bone Chemistry Bone surface FTIRI

Cortical Periosteal surface

Page 10: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

FTIRI Parameters Correlate with

Mechanical Properties

Page 11: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Vertebral bone strength correlates with vertebral

crystallinity

0.6 0.8 1.0 1.2 1.4 1.6 1.8 2.0 2.215

20

25

30

Str

ess (

MP

a)

1030/1020 (area ratio)

R2= 0.29 p= 0.03

Weinstein et al., Aging Cell, 2010

Page 12: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Synchrotron Data

Judex et al, Calcif Tissue Int, 2005

Page 13: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Bone Volume 47, Issue 6 2010 1030 - 1038

Page 14: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

What is needed to perform FTIRI of Bone

FTIRI is a transmission experiment = thin sections

Imaging Spectrometer Software for data processing

Embedding media: PMMA, Spurs, LR-white

Zebra fish and calvaria, cell cultureScales

D16, 4P

Page 15: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Boskey et al, BBA, 2006

EFFECT of EMBEDDING MEDIA

PMMA, Spurr, but not GMA can be removed by spectral subtraction.

Page 16: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

(Donnelly et al., JOR, 2011)

•Mean values of all parameters similar across sites (a,b). •Heterogeneities more variable across sites (1c,d). •In trabecular tissue, the heterogeneity of the crystallinity at the sub-trochanter was greater than that of the iliac crest (+46%, p=0.008) and the greater trochanter (+36%, p=0.019).•No differences in heterogeneities of other trabecular tissue properties, nor in heterogeneities of cortical parameters.

Values normalized to those at the iliac crest. Missing bars indicate that the tissue type was not present in the biopsy, n=4

Tissue Heterogeneity:Select a Single Tissue for Comparison

Page 17: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Processing FTIRI Data

Subtract contribution of embedding media and water vapor

Display raw images Univariate analysis

Mapping parameters Curve fitting and deconvolution

Multivariate analysis PLS, Cluster Analysis, Factor Analysis

Page 18: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Table I

Table I: Infrared Parameters used in Imaging of Bone Parameter Wavelength Range (cm-1) Validation Correlates with Mineral:Matrix 900-1200/1585-1720 Ash Wt. 6 BMD and ash weight, fracture

risk18,19 Carbonate:Phosphate 850-890/900-1200 Chemical

analysis15 Age (increase)20

Collagen Maturity 1660/1690 Chemical analysis16

Pyridinoline/deoxypyridinoline; fracture risk19

Crystallinity 1030/1020 X-RD6 Bone strength, fracture risk21 HPO4 substitution 1128/1096 Model

compounds17 Bone age (inverse)17

References available on request

Page 19: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Applications : Answering Specific Questions about Bone

Page 20: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Effect of Tissue Age: Healthy Baboon Study

4

4.5

5

5.5

6

6.5

7

Pixels

Pix

els

10 20 30

5

10

15

20

25

30

35

40

Mineral to Matrix Ratio

1.2

1.25

1.3

1.35

Pixels

Pix

els

5 10 15 20 25 30 35

5

10

15

20

1.2

1.25

1.3

1.35

Pixels

Pix

els

5 10 15 20 25 30 35

5

10

15

20

1.2

1.25

1.3

1.35

Pixels

Pix

els

5 10 15 20 25 30 35

5

10

15

20

1.2

1.25

1.3

1.35

Pixels

Pix

els

5 10 15 20 25 30 35

5

10

15

20

1.2

1.25

1.3

1.35

Pixels

Pix

els

5 10 15 20 25 30 35

5

10

15

20

10%50%

100%

SHG

Gourioon-Arsiquaud et al JBMR, 2010

Page 21: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Mineral/Matrix, Crystallinity & CO3/Amide I

2.5

R2 = 0.8566

R2 = 0.8328

R2 = 0.8969

3.5

4

4.5

5

5.5

6

0 5 10 15 20 25 30

Baboon Age (years)

Min

/Mat

rix ra

tio

10% 20% 30% 40% 50% 60% 70% 80% 90% 100%

Page 22: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Collagen Cross link Ratio (XLR)

Page 23: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

FTIR

Interstitial Tissue

Secondary Osteon

Old Osteon

Age Dependent Changes in Mature Human Bones

Cadaveric Femurs

Male (n = 12)

Middle-aged (n = 6)

Old(n = 6)

Secondary Osteons x 3Old Osteons x 3

Interstitial x 3

M. Reyes, Dissertation, U Tx San Antonio

Second ost eoO l d O st eonI nt er st i t i al Second ost eoO l d O st eonI nt er st i t i al0

1

2

3

4

5

6

7

Mi n e ra l /Ma tri x

Mi d d l e Ag e d Ol d

Cadaveric Femurs

Interstitial tissue has higher Min/Mat than secondary or old

osteons

Page 24: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Can FTIR Parameters Predict Fracture Risk Independently of BMD? Collagen Maturity Crystallinity

Crystallinity[Gourion-Arsiquaud et al. 2009]

Page 25: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

FTIRI Parameters Predictive of Fracture Risk – Iliac Crest BiopsiesGlobal averages – all parameters

* p<0.05; **p<0.001; n=52

Page 26: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Multiple logistic regression model

Fracture (0/1) = bo +b1BMD +b2age +b3 Rx +b4(min/mat) +b5(xstl) + b6(XLR) + b7(CO3/P)

Page 27: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Studies of KO animals: DMP-1 KO

Min//Mat

XST

Ling et al., JBMR 2005

Page 28: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Studies in mutant animals: models where collagen synthesis is defective

fro/fro WT

Mineral/Matrix

0

4

8

12

fro/fro oim/oim

-/-

+/+

Crystallinity

0

0.5

1

1.5

fro/fro oim/oim

-/-

+/+

Carb/Phosphate

0

0.004

0.008

fro/fro oim/oim

-/-

+/+*

*

Coleman, et al. Bone, 2012

Page 29: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

0

1

2

3

4

5

6

7

Placebo ALN

Effects of Treatment P

ara

mete

r M

ean

Boskey et al., 2009

M/M C/P C/Am I Xst XLR M/M C/P C/Am I Xst XLR0

1

2

3

4

5

6

7

*

**

Cortical Bone Cancellous Bone

*

Mineral/Matrix significantly increased in women without fractures treated 2 yrs with ALN

Page 30: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Compositional Heterogeneity Healthy bone has a broad distribution of

tissue properties reflecting the presence of new and old bone

A heterogeneous tissue may be better able to resist crack propagation [Burr & Martin 1986]

4.555.566.50

50

100

150

200

250

300

350

Nu

mb

ers

of

Pix

els

FWHM

A)

Page 31: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

M/M C/P C/Am I XLR XST M/M C/P C/Am I XLR XST

Cortical Cancellous

0

1

2

3

4

5

6

FWH

MPlacebo

*

*

* *

*

*

**

ALN

Heterogeneity is Decreased in the ALN treated patients

Page 32: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Multivariate Analysis: PLS, Factor Analysis, Cluster Analysis, Neural Networks

Factor Analysis

F1

F2

0.982

0.984

0.986

0.988

0.99

0.992

0.994

0.996

0.998

20 40 60 80 100 120 140 160

20

40

60

80

100

120

140

micrometers

mic

rom

eter

s

F3 F6

F5

F4

10001100

F1

F6

Factor Loadings

Spevak et al., Calcif Tissue 2013

Page 33: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Future DirectionsSpecular Reflection (SR)

Reflection from a mirror

Nicholson et al., Anal Chem 2012 84(7) 3369.

Racehorse calcified cartilage and subchondral bone (uniform age) at potential sites of fracture

Page 34: FTIRI provides a “chemical photograph” in thin sections of tissue The tissue must be sufficiently thin to allow the passage of infrared radiation (1-2

Future Directions – AFM IR to be acquired July 2014

© 2012 Anasys Instruments

800100012001400160018000

5

10

15

20

25

30

35

15μm40μm

nanoIR Spectra Collected at Different Distances from Osteon Center

AFM image 60 x 5 μm