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Your search returned 2,877 proteins. Search Criteria Displaying 50 per pageDisplay Settings

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Gene/Protein Search Result

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Select all 2,877 proteins

Gene Product Name Entrez ID UniProtKB Accession Species Name Strain Name Mature Peptide

envelope protein -N/A- -N/A- Dengue virus Type 1 02-20 Y

Envelope protein -N/A- Dengue virus Type 3 07CHLS001 Y

Envelope protein -N/A- Dengue virus Type 2 1018-DF-12/03/2001 Y

Envelope protein -N/A- Dengue virus Type 2 1024-DHF-12/07/2001 Y

Envelope protein -N/A- -N/A- Dengue virus Type 2 1183-DF-06/17/2002 Y


Envelope protein -N/A- -N/A- Dengue virus Type 2 131 Y




Envelope protein -N/A- -N/A- Dengue virus Type 2 1464-DHF-07/20/2002 Y

envelope protein -N/A- -N/A- Dengue virus Type 1 16007 Y

envelope protein -N/A- -N/A- Dengue virus Type 1 16007 (PDK-13) Y







envelope protein -N/A- -N/A- Dengue virus Type 1 259par00 Y



envelope protein -N/A- -N/A- Dengue virus Type 1 280par00 Y

envelope protein -N/A- -N/A- Dengue virus Type 1 293arg00 Y



envelope (E) protein -N/A- -N/A- Dengue virus Type 4 2A Y


envelope (E) protein -N/A- -N/A- Dengue virus Type 4 341750 Y



envelope protein -N/A- -N/A- Dengue virus Type 1 71/02GZ Y

Envelope protein -N/A- -N/A- Dengue virus Type 3 80-2 Y

envelope (E) protein -N/A- -N/A- Dengue virus Type 4 814669 Y



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Register for a Workbench account / log into your Workbench 1. Choose a virus family first. 2. On the virus family homepage, click either the “Register for a Workbench” link under the “Workbench”

tab or the “Workbench Sign In” button in the top-right corner. Follow the instructions to create an account.

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Register for a Workbench using your email, name, and institution

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Access your Workbench

Save data, searches and analyses online

Save a search 1. On the search result page, click the

“Save Search” button to save it to your Workbench.

2. For Genes & Proteins search, you have the option of getting email alerts on newly released data that match your search criteria by checking the “Subscribe” box.

3. To rerun a saved search, click the “Workbench” tab, find the saved search and click next to it.

Add items to a working set 1. On the search result page, select

the desired items and click the “Add to Working Set” button. You can add additional items to the same working set later by repeating the process.

2. To view a working set, click the “Workbench” tab, find the working set and click next to it.

3. On the working set details page, mouse-over the “Run Analysis” tab and select the desired analysis.

Save an analysis 1. On a search result page, mouse-

over the “Run Analysis” tab and select the desired analysis.

2. After the analysis is finished, click the “Save Analysis” button to save it to your Workbench.

3. To retrieve a saved analysis, click the “Workbench” tab, find the analysis and click next to it.

Cite ViPR Tutorials Report a Bug Request Web Training Contact Us Release Date: Jul 18, 2011

This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between NorthropGrumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S.Department of Veterans Affairs , Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics.

Number of Sequences 50Sequence Label Strain Name

Save Analysis Generate Phylogenetic Tree

Visualize Aligned Sequences

SEQUENCE INFORMATION

Home Gene/Protein... Results Visualize Aligned Sequences Results

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ViPR is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between Northrop Grumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Comments, questions, suggestions? Contact us at [email protected]

2

Access, organize, and share your saved working sets/searches/analyses from your Workbench To access your Workbench, click the “Workbench” tab on the navigation bar. You’ll be prompted to log in if you haven’t done so.

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Freely available Integrated datasets Bioinformatics tool suite

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• Save selected unsaved searches/analysis results

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• Download data • Copy selected working sets • Convert the selected working

set into a new working set with a different data type

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Select a working set/search/analysis from the Workbench and mouse-over the Sharing button to share items with

collaborators who have a ViPR Workbench account. You can also make items public, or change sharing setting.

Click the “Workbench” tab

to access your Workbench

Click to display the item along with the relevant options: • For working sets, you can select sequences and run analyses by mousing-

over the “Run Analysis” menu and then clicking the desired analysis tool. • For searches, click to rerun the search and view the search results. • For analyses, click to retrieve the analysis result.

Select working sets, searches, or analyses and organize them in folders

Share items with collaborators 1. Check the checkbox next to the item that you want to share. 2. Mouse-over the Sharing button to share the item with

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Save an unsaved search 1. Check the checkbox next to the search that you want to

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Searches”. Upload your own data to ViPR and run an analysis 1. Click the “More Actions” button on the Workbench page. 2. Click “Upload File”, type in a Name and description, choose

a “File Type” (e.g., PDB, Phylip, Newick, FASTA, tab delimited), then click “Choose File” to find the file to be uploaded and click “Upload”.

3. After the upload process is finished, you’ll be taken to the Workbench page. Find the file you just uploaded and click

next to it. 4. On the next page, mouse-over the blue “Run Analysis”

button at the top of the page to view available analysis options for your file.

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ViPR is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272200900041C and is a collaboration between Northrop Grumman Health IT, University of Texas Southwestern Medical Center and Vecna Technologies. Comments, questions, suggestions? Contact us at [email protected]

Convert the selected working set into a new working set

with different type (nucleotide, protein, or strain)

freely available integrated datasets bioinformatics tool ... · vipr is funded by the national...

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