forest research (2010 2019)€¦ · [email protected] technologies perspectives plot origins the...

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6/19/2019 1 Professor Chris Hopkinson Research Chair [email protected] Technologies Perspectives Plot origins The frontier Next steps Dr. Zhouxin Xi (ABD) Research Associate [email protected] Hopkinson & Xi, CIF, 2019 TLS Forest Research Trend (20102019) Web of Science Database Topics: terrestrial, tree, lidar Search year: 20102019 Results: 530 publication records Topic of TLS becomes increasingly popular over the decade Hopkinson & Xi, CIF, 2019

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Page 1: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

6/19/2019

1

Professor Chris HopkinsonResearch Chair

[email protected]

TechnologiesPerspectivesPlot originsThe frontierNext steps

Dr. Zhouxin Xi (ABD)Research [email protected]

Hopkinson & Xi, CIF, 2019

TLS Forest Research Trend (2010‐2019)

Web of Science Database

Topics: terrestrial, tree, lidar

Search year: 2010‐2019

Results: 530 publication records

Topic of TLS becomes increasingly popular over the decade

Hopkinson & Xi, CIF, 2019

Page 2: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Consumer‐based Flash LiDAR  Xbox Kinect

Hopkinson & Xi, 2019

Configurations

• Static frame = HV dual axis scanner

• Rotating head = single vertical line scan

• Combo = frame with pan / tilt mount

• Precision / resolution = mm to cm

• Range = metres to kilometres

• Most combine GPS & image capture

• Some apply motion compensation with IMU

Z+FTrimble

Optech ILRIS Riegl

LeicaEchidna

More typical commercial TLS sensor types

Hopkinson & Xi, 2019

Faro

Teledyne Polaris

Page 3: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Hopkinson & Xi, CIF, 2019

Mobile solutions

CSIRO Team:

Zlot, Bosse, Wark, Flick, DuffZeb 1

LiBackpack

Frame scan configuration

Hopkinson & Xi, 2019

Page 4: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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At least 3 scans for uniform sampling

Complex set up requires tree height

Occlusion into plot centre

PSP sampling configurations:   Frame scan

Hopkinson & Xi, 2019

A + BA B

Frame scanner with pan/tilt mount

OR: rotating  line scanner; e.g. Echidna

Occlusions heading out of plot

PSP sampling configurations:   Hemisphere scan

Hopkinson & Xi, 2019

Page 5: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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PSP sampling configurations:   Mobile scan

Hopkinson & Xi, CIF, 2019

Truck mountedBackpack mounted

(LiBackpack 50)

https://greenvalleyintl.com/applications/finding‐dbh‐values‐handheld‐mobile‐lidar/

Point cloud attributes: Density & Occlusions

Density

Terrestrial

Airborne

Page 6: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Point cloud attributes: Scanner, Elevation, Intensity, Echo class

Hopkinson & Xi, CIF, 2019

Assessing forest metrics with a ground‐based scanning lidarHopkinson, Chasmer, Pow, Treitz. 2004

Page 7: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Tree stem identification & extraction

Neighbourhood 

around stem centroid 

at max crown size

Point data extracted 

written to “tree” file

Tree files “cleaned”

Crown diameter

Manually assessed with virtual calipers

Page 8: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Plot 6 ILRIS tree height

y = 1.09x

R2 = 0.86

0

5

10

15

20

25

30

35

0 5 10 15 20 25 30 35

ILRIS (m)

Ma

nu

al

(m)

1:1 line

Plot 6 ILRIS stem diameter

y = 1.05x

R2 = 0.98

0.0

0.1

0.2

0.3

0.4

0.5

0.6

0.7

0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7

ILRIS (m)

Ma

nu

al

(m)

1:1 line

Height

Tree Height Vector connecting max 

& min pt within file

Vector length ~ tree ht

Tree stem data from 

1.25 – 1.75 m selected

Cylinder “primitive” 

fitted

Stem DBH

DBH

Workflow

Plot scans →

Align →

DEM →

Tree isolation →

Stem extraction →

DBH, height, stem taper/volume →

Allometric equations applied 

Xi, Z.; Hopkinson, C.; Chasmer, L. Automating Plot‐Level Stem Analysis from Terrestrial Laser Scanning. Forests 2016, 7, 252.

Automated allometric biomass estimation

Hopkinson & Xi, CIF, 2019

Page 9: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Workflow

Decompose point cloud into classes 

• Stem 

• Branch 

• Other

Apply biomass factor to each class

Quantitative Structural Modelling (QSM)

Hopkinson & Xi, CIF, 2019

Component Maple Aspen Pine

Stem 92.3%  81.2% 91.5%

Branch 6.5% 17.6% 8.4%

Isolated wood 0.3% 0.05% 0.03%

Understory 0.9% 1.2% 0.1%

plotwood

treebranch

stem

understory

isolatedleaf

Xi, Z.; Hopkinson, C.; Chasmer, L. Filtering Stems and Branches from Terrestrial Laser Scanning Point Clouds Using Deep 3‐D Fully Convolutional Networks. Remote Sens. 2018, 10, 1215.

Workflow:

7 TLS plots/582 stems →Machine learning segmentation → Deep learning classification → 92% accuracy 

Artificial intelligence species classification

Hopkinson & Xi, CIF, 2019

Xi, Z. 2019. Enhancing Forest Biomass Inventory with Ground‐based LiDAR. PhD Thesis, University of Lethbridge. pp162

Lodgepole Pine Red Pine Scots Pine Silver Birch Norway Spruce Trembling Aspen Sugar Maple

Page 10: Forest Research (2010 2019)€¦ · c.hopkinson@uleth.ca Technologies Perspectives Plot origins The frontier Next steps Dr. ZhouxinXi (ABD) Research Associate zhouxin.xi@uleth.ca

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Ongoing Research

Hardware

• Multispectral lidar

• Low‐powered real‐time LED/RGB monitoring

• Data fusion & scaling (TLS for cal / val)

Software

• Machine learning, artificial intelligence & deep learning

• New allometric approaches

Applications

• Shrub & juvenile biomass assessment

• Change detection (growth, stress, mortality, seasonal)

Hopkinson & Xi, CIF, 2019

Fusion Scanning SystemZhouxin Xi

Ecosystem Diagnostic Imaging Facility

• Western Economic Diversification Project

• Airborne Multispectral Lidar, TLS, UAV

• Environment & Resource Monitoring

• Risk Assessment & Mitigation

• Disaster Response

Thanks!