figure 1. map of the lower calaveras river basin....new hogan jl (upper) jl (lower) figure 14....

14
Figure 1. Map of the lower Calaveras River Basin. Jenny Lind

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Page 1: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Figure 1. Map of the lower Calaveras River Basin.

Jenny Lind

Page 2: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Figure 2. Steelhead and resident rainbow trout life cycle and potential limiting factors in the Calaveras River watershed.

SPAWNING

INCUBATION

REARING

OUTMIGRATION(steelhead only)

OCEAN andDELTA

REARING

UPSTREAMMIGRATION

&Ocean

Estuary

Factors Affecting Upstream Migration•Physical migration barriers (dams, dewatered reaches, natural falls, culverts, sand bars at mouth of estuary)

•Migration corridor hazards (unscreened diversions, bypasses, poaching, water quality)

Factors Affecting Spawning and Incubation•Redd dewatering•Spawning gravel quality (permeability)•Spawning gravel mobility (redd scour)•Water quality and temperature

Factors Affecting Fry Rearing

•Proximity of fry rearing habitat to spawning areas

•Water quality and temperature•Food availability•Stranding by low flows•Displacement by high flows

Factors Affecting Juvenile Rearing•Availability of oversummering habitat (deep pools, temperature refugia)

•Availability of overwintering habitat (in-channel LWD, interstitial habitat)

•Stranding by low flows•Displacement by high flows•Food availability•Water quality and temperature

Factors Affecting Outmigration•Predation•Diversion hazards

Factors Affecting Estuary and Ocean Rearing

• Loss of estuarine rearing habitat

•Water quality and temperature

•Harvest• Ocean conditions•Predation

Calaveras River Basin

Resident Trout

Page 3: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Figure 3. Chinook salmon life cycle (fall and spring runs) and potential limiting factors in the Calaveras River watershed.

SPAWNING

INCUBATION

REARING

OUTMIGRATION

OCEANREARING

UPSTREAMMIGRATION

&Ocean

Calaveras River Basin

Estuary

Factors Affecting Upstream Migration

• Attraction flows• Physical migration barriers (inadequate flows)

• Environmental migration barriers (water quality, water temperature)

• Migration corridor hazards (unscreened diversions, bypasses, poaching)

Factors Affecting Spawning and Incubation•Spawning gravel quantity and reddsuperimposition

•Spawning gravel quality (intergravel flow, sedimentation, armoring)

•Water quality and temperature•Substrate mobility/scouring (redd scour)•Redd dewatering

Factors Affecting Fry Rearing

•Availability of suitable stream margin and off-channel habitat for fry rearing

•Water quality (temperature, toxics)

•Predation•Displacement by high flows

Factors Affecting Juvenile Rearing•Predation•Food availability•Water quality and temperature

Factors Affecting Outmigration•Adequate flows for outmigration•Water quality and temperature•Predation•Diversion hazards

Factors Affecting Estuary and Ocean Rearing• Loss of estuarine rearing habitat•Temperature•Water quality • Dissolved oxygen• Harvest• Ocean conditions

Factors Affecting Summer Holding(applies to spring run only)• Presence of deep pools (with thermal stratification)•Water quality and temperature

SUMMERHOLDING

(spring run only)

Page 4: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

New Hogan Dam

Shelton Rd Br

Jenny Lind Br.

Canyon Reach

Figure 4. Locations of habitat patches suitable for salmonid spawning in the Calaveras River between New Hogan Dam and Shelton Road. Smaller gravel patches in the Canyon Reach are unlikely to be used by Chinook salmon.

Page 5: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Figure 5. Location and size class of larger pools in the lower Calaveras River.

Page 6: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Redd Area (ft2)

Per

cent

0 2 4 6 8 10

0.0

0.1

0.2

0.3

Canyon

Hogan

Jenny Lind

Figure 6. Size distribution of Oncorhynchus mykiss redds in Jenny Lind, Hogan, and Canyon reaches of the Calaveras River. Area under the curves equals 1.0. No significant differences in redd size were found between reaches when tested using non-parametric test for equality.

Page 7: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

0.00

0.10

0.20

0.30

0.40

0.50

0.60

0.70

0.80

A B C A B C A B C A B C A B C A B C A B C

2

A B C

Hogan Reach Jenny Lind Reach

5 7 7.5 15105 19

Riffle Number

Expe

cted

Egg

Sur

viva

l

Figure 7. Egg survival predicted from gravel permeability measured at three sites (A, B, C) in selected riffles in the New Hogan and Jenny Lind Reaches. Riffle numbers represent individual riffles within each reach.

Page 8: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

WY 1999

0.1

1

10

100

1000

10000

100000

10/1/98 11/20/98 1/9/99 2/28/99 4/19/99 6/8/99 7/28/99 9/16/99

Dai

ly D

isch

arge

(cfs

)

WY 2000

0.1

1

10

100

1000

10000

100000

10/1/99 11/20/99 1/9/00 2/28/00 4/18/00 6/7/00 7/27/00 9/15/00

Date

Dai

ly D

isch

arge

(cfs

)WY 1970

0.1

1

10

100

1000

10000

100000

10/1/69 11/20/69 1/9/70 2/28/70 4/19/70 6/8/70 7/28/70 9/16/70

Dai

ly D

isch

arge

(cfs

)

Figure 8. Hydrographs for the median water year (WY 1999) and water years ranked immediately above (WY 2000) and below (WY 1970) the median during the period of record from 1964 and 2002 below New Hogan Dam.

Page 9: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Water Year 1999

0.1

1

10

100

1000

10000

10/1 11/20 1/9 2/28 4/19 6/8 7/28 9/16

Date

Dis

char

ge (c

fs)

Water Year 2000

0.1

1

10

100

1000

10000

10/1 11/20 1/9 2/28 4/18 6/7 7/27 9/15

Date

Dis

char

ge (c

fs)

Figure 9. Mormon Slough hydrographs for water years 1999 and 2000. Data downloaded from CDEC Mormon Slough at Bellota (USACE). Data arepreliminary.

WY 2000

WY 1999

Page 10: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

Figure 10. Hydrographs for years classified by the Department of Water Resources as “critically dry” (WY 1989) and “wet” (WY 1983).

0.1

1

10

100

1000

10000

100000

10/1/10 11/20/10 1/9/11 2/28/11 4/19/11 6/8/11 7/28/11 9/16/11

Date

Dai

ly D

isch

arge

(cfs

)

10/1/1912 - 9/30/1913

0.1

1

10

100

1000

10000

100000

10/1/12 11/20/12 1/9/13 2/28/13 4/19/13 6/8/13 7/28/13 9/16/13

Date

Dai

ly D

isch

arge

(cfs

)

WY 1989

WY 1983

Page 11: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

01 O

ct

11 O

ct

21 O

ct

31 O

ct

10 N

ov

20 N

ov

30 N

ov

10 D

ec

20 D

ec

30 D

ec

09 J

an

19 J

an

29 J

an

08 F

eb

18 F

eb

28 F

eb

10 M

ar

20 M

ar

30 M

ar

09 A

pr

19 A

pr

29 A

pr

09 M

ay

19 M

ay

29 M

ay

08 J

un

18 J

un

28 J

un

01 O

ct

11 O

ct

21 O

ct

31 O

ct

10 N

ov

20 N

ov

30 N

ov

10 D

ec

20 D

ec

30 D

ec

09 J

an

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an

29 J

an

08 F

eb

18 F

eb

28 F

eb

10 M

ar

20 M

ar

30 M

ar

09 A

pr

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pr

29 A

pr

09 M

ay

19 M

ay

29 M

ay

08 J

un

18 J

un

28 J

un

30mm

40mm

60mm

80mm

30mm

40mm

60mm

80mm

01 A

ug

11 A

ug

21 A

ug

31 A

ug

10 S

ep

20 S

ep

30 S

ep

10 O

ct

20 O

ct

30 O

ct

09 N

ov

19 N

ov

29 N

ov

09 D

ec

19 D

ec

29 D

ec

08 J

an

18 J

an

28 J

an

07 F

eb

17 F

eb

27 F

eb

09 M

ar

19 M

ar

29 M

ar

08 A

pr

18 A

pr

28 A

pr

01 A

ug

11 A

ug

21 A

ug

31 A

ug

10 S

ep

20 S

ep

30 S

ep

10 O

ct

20 O

ct

30 O

ct

09 N

ov

19 N

ov

29 N

ov

09 D

ec

19 D

ec

29 D

ec

08 J

an

18 J

an

28 J

an

07 F

eb

17 F

eb

27 F

eb

09 M

ar

19 M

ar

29 M

ar

08 A

pr

18 A

pr

28 A

pr

spawn

hatch

emerge

spawn

hatch

emerge

Figure 11. Chinook salmon development calendar based on water temperatures at New Hogan Dam. The lower calendar displays time from spawning to emergence for a range of spawning dates. The upper calendar displays time needed to reach 80 mm in length based on a range of emergence dates.

Page 12: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

01 O

ct

11 O

ct

21 O

ct

31 O

ct

10 N

ov

20 N

ov

30 N

ov

10 D

ec

20 D

ec

30 D

ec

09 J

an

19 J

an

29 J

an

08 F

eb

18 F

eb

28 F

eb

10 M

ar

20 M

ar

30 M

ar

09 A

pr

19 A

pr

29 A

pr

09 M

ay

19 M

ay

29 M

ay

08 J

un

18 J

un

28 J

un

01 O

ct

11 O

ct

21 O

ct

31 O

ct

10 N

ov

20 N

ov

30 N

ov

10 D

ec

20 D

ec

30 D

ec

09 J

an

19 J

an

29 J

an

08 F

eb

18 F

eb

28 F

eb

10 M

ar

20 M

ar

30 M

ar

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pr

19 A

pr

29 A

pr

09 M

ay

19 M

ay

29 M

ay

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un

18 J

un

28 J

un

30mm

40mm

60mm

80mm

30mm

40mm

60mm

80mm

01 A

ug

11 A

ug

21 A

ug

31 A

ug

10 S

ep

20 S

ep

30 S

ep

10 O

ct

20 O

ct

30 O

ct

09 N

ov

19 N

ov

29 N

ov

09 D

ec

19 D

ec

29 D

ec

08 J

an

18 J

an

28 J

an

07 F

eb

17 F

eb

27 F

eb

09 M

ar

19 M

ar

29 M

ar

08 A

pr

18 A

pr

28 A

pr

01 A

ug

11 A

ug

21 A

ug

31 A

ug

10 S

ep

20 S

ep

30 S

ep

10 O

ct

20 O

ct

30 O

ct

09 N

ov

19 N

ov

29 N

ov

09 D

ec

19 D

ec

29 D

ec

08 J

an

18 J

an

28 J

an

07 F

eb

17 F

eb

27 F

eb

09 M

ar

19 M

ar

29 M

ar

08 A

pr

18 A

pr

28 A

pr

spawn

hatch

emerge

spawn

hatch

emerge

Figure 12. Chinook salmon development calendar based on water temperatures at upper portion of the Jenny Lind Reach. The lower calendar displays time from spawning to emergence for a range of spawning dates. The upper calendar displays time needed to reach 80 mm in length based on a range of emergence dates.

Page 13: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

01 O

ct

11 O

ct

21 O

ct

31 O

ct

10 N

ov

20 N

ov

30 N

ov

10 D

ec

20 D

ec

30 D

ec

09 J

an

19 J

an

29 J

an

08 F

eb

18 F

eb

28 F

eb

10 M

ar

20 M

ar

30 M

ar

09 A

pr

19 A

pr

29 A

pr

09 M

ay

19 M

ay

29 M

ay

08 J

un

18 J

un

28 J

un

01 O

ct

11 O

ct

21 O

ct

31 O

ct

10 N

ov

20 N

ov

30 N

ov

10 D

ec

20 D

ec

30 D

ec

09 J

an

19 J

an

29 J

an

08 F

eb

18 F

eb

28 F

eb

10 M

ar

20 M

ar

30 M

ar

09 A

pr

19 A

pr

29 A

pr

09 M

ay

19 M

ay

29 M

ay

08 J

un

18 J

un

28 J

un

30mm

40mm

60mm

80mm

30mm

40mm

60mm

80mm

Figure 13. Chinook salmon development calendar based on water temperatures at lower portion of the Jenny Lind Reach. The calendar displays time needed to reach 80 mm in length based on a range of emergence dates.

Page 14: Figure 1. Map of the lower Calaveras River Basin....New Hogan JL (upper) JL (lower) Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and

0

2

4

6

8

10

12

14

16

189/

1

10/1

11/1

12/1 1/1

2/1

3/1

4/1

5/1

6/1

7/1

New Hogan

JL (upper)

JL (lower)

Figure 14. Calaveras River temperatures used to model Chinook salmon development in New Hogan and Jenny Lind (JL) reaches.

Date

Tem

pera

ture

(°C

)