fermentative production of butanol. the industrial perspective
TRANSCRIPT
COBIOT-862; NO. OF PAGES 7
Available online at www.sciencedirect.com
Fermentative production of butanol—the industrial perspectiveEdward M Green
A sustainable bacterial fermentation route to produce
biobutanol is poised for re-commercialization. Today,
biobutanol can compete with synthetic butanol in the
chemical market. Biobutanol is also a superior biofuel and, in
longer term, can make an important contribution towards the
demand for next generation biofuels. There is scope to
improve the conventional fermentation process with
solventogenic clostridia and drive down the production cost
of 1-butanol by deploying recent advances in biotechnology
and engineering. This review describes re-commercialization
efforts and highlights developments in feedstock utilization,
microbial strain development and fermentation process
development, all of which significantly impact production
costs.
Address
Green Biologics Ltd., 45A Milton Park, Abingdon, Oxfordshire OX14
4RU, United Kingdom
Corresponding author: Green, Edward M ([email protected])
Current Opinion in Biotechnology 2011, 22:1–7
This review comes from a themed issue on
Energy biotechnology
Edited by Peter Duerre and Tom Richard
0958-1669/$ – see front matter
# 2011 Elsevier Ltd. All rights reserved.
DOI 10.1016/j.copbio.2011.02.004
Introduction1-Butanol (butyl alcohol or n-butanol) is a four carbon
straight chained alcohol with a molecular formula of
C4H9OH (MW 74.12) and boiling point of 118 8C. 1-
Butanol is an important chemical precursor for paints,
polymers and plastics. In 2008, the global market for 1-
butanol was 2.8 million t [1], estimated to be worth
approximately $5 billion. The average growth is expected
to be 3.2% pa with demand concentrated in North Amer-
ica (28%), Western Europe (23%) and North East Asia
(35%).
Most 1-butanol produced today is synthetic and derived
from a petrochemical route based on propylene oxo
synthesis in which aldehydes from propylene hydrofor-
mylation are hydrogenated to yield 1-butanol. Synthetic
butanol production costs are linked to the propylene
market and are extremely sensitive to the price of crude
oil (Figure 1).
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
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Renewable 1-butanol is produced from the fermentation
of carbohydrates in a process often referred to as the ABE
fermentation, after its major chemical products: acetone,
butanol and ethanol. The ABE fermentation is a proven
industrial process that uses solventogenic clostridia to
convert sugars or starches into solvents [2]. The fermen-
tation occurs in two stages; the first is a growth stage in
which acetic and butyric acids are produced and the
second stage is characterized by acid re-assimilation into
ABE solvents. During this stage, growth slows, the cells
accumulate granulose and form endospores. The fermen-
tation also produces carbon dioxide and hydrogen.
Biobutanol is an attractive renewable liquid transportation
biofuel. The superior properties have been well documen-
ted (http://www.butamax.com/_assets/pdf/butamax_
advanced_biofuels_llc_fact_sheet.pdf). Bio-butanol fits
the existing fuel infrastructure; it has a better energy
density and performance than ethanol and can be made
from more sustainable feedstocks than bio-diesel. There-
fore, bio-butanol has the potential to substitute for both
ethanol and bio-diesel in the biofuel market estimated to
be worth $247 billion by 2020 (http://www.pikeresearch.
com/research/biofuels-markets-and-technologies).
Commercial productionThe ABE fermentation process was first developed in the
UK in 1912 and commercial production quickly spread
around the globe during the first and second world wars;
first to produce acetone for ammunitions and then later to
produce butanol for paint lacquers. The fermentation
process fell out of favour in the US and Europe in the
1950s when renewable solvents could no longer compete
with their synthetic equivalents on price. Some pro-
duction via fermentation remained in China, Russia
and South Africa until the early 1980s [3–5].
Commercial solvent titres peak at about 20 g/L from 55 to
60 g/L of substrate giving solvent yields of around 0.35 g/
g sugar [4]. The butanol:solvent molar ratio is typically 0.6
with an A:B:E ratio of 3:6:1 [2]. Butanol is the preferred
solvent since it attracts the highest price in the chemical
market.
China leads efforts to re-commercialize the ABE fermen-
tation process. Over $200 million has recently been
invested in China to install 0.21 million t pa of solvent
capacity with plans to expand to 1 million t pa. There are
six major plants that produce about 30 000 t butanol pa
from corn starch [6�]. Most plants operate in a semi-
continuous fashion with each fermentation lasting up
to 21 days. The plants typically house several trains of
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
Current Opinion in Biotechnology 2011, 22:1–7
2 Energy biotechnology
COBIOT-862; NO. OF PAGES 7
Figure 1
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Current Opinion in Biotechnology
The relationship between crude oil ($/barrel) and the synthetic butanol price in China during 2010.
up to eight fermentation tanks (300–400 m3 volumes)
linked together in series. Fresh feedstock, together with
periodic additions of seed culture, cascades through the
fermentors in a process that provides sufficient residence
time for re-assimilation of acids to solvents. Conventional
distillation is then used to recover acetone, butanol and
ethanol. Most plants are located next to ethanol plants to
reduce utility and operating costs. Co-located operations
tend to share effluent treatment facilities based on
anaerobic digestion (AD). Biogas, produced from the
AD process, is used to generate heat and power. Although
not widely practiced, additional value can be gained from
the recovery of hydrogen from the fermentation exhaust
gas (typically 1/10th of mass of butanol produced).
A relatively new plant has been built in Brazil and
operated by HC Sucroquimica. This plant produces
8000 t solvent pa from sugar cane juice and is located
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
Table 1
The challenges and solutions for ABE fermentation
Challenge
High feedstock cost significantly increase operating costs.
Low butanol titres increase recovery costs. Low titres also
reduce sugar loadings and increase water usage.
Low butanol yield increases feedstock costs.
Low volumetric solvent productivities increase capital
and operating costs.
Solvent recovery using conventional distillation is energy
intensive and relatively expensive.
High water usage is not sustainable and increases
the cost of effluent treatment.
Current Opinion in Biotechnology 2011, 22:1–7
next to an ethanol distillery and sugar mill (GBL market
data).
The challenges for ABE fermentationThe technical and related commercial challenges for the
conventional ABE fermentation have been extensively
reviewed [7–9] and are summarized in Table 1. In gen-
eral, there is a need for cheaper feedstocks, improved
fermentation performance and more sustainable process
operations for solvent recovery and water recycle. Feed-
stocks contribute most to production cost. On a conven-
tional plant, corn starch accounts for up to 79% of the
overall solvent production cost while energy for oper-
ations including distillation, contributes 14% to the over-
all cost [10]. Today, the production cost (and profitability)
of the plant largely depends upon the price of feedstock
and is extremely sensitive to any price fluctuation. There-
fore, transition towards cheaper (non-edible) feedstocks
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
Solutions
Transition towards cheaper (and more sustainable) feedstocks
such as wastes and agricultural residues.
Develop improved microbes with improved solvent titres and/or
develop methods for in situ product removal to alleviate end
product tolerance.
Develop improved microbes with higher butanol yields and/or
develop microbes with higher butanol: solvent ratios.
Develop continuous fermentation processes that reduce down
time and increase volumetric productivity.
Develop low energy methods for solvent recovery and purification.
Recovery can also be improved by improving the solvent titre.
Recycle process water back through the fermentation.
www.sciencedirect.com
Fermentative production of butanol—the industrial perspective Green 3
COBIOT-862; NO. OF PAGES 7
offers the biggest opportunity for cost reduction and
improved sustainability.
Fermentation plant profitability is also sensitive to the
butanol price which in turn is linked to the cost of oil
(Figure 1). For example, in 2008 the oil price crashed and
the butanol price fell from $2400/t to $1000/t between
June and November [6�]. All plants in China ceased
production. By the end of 2010, the butanol price recov-
ered to around $2000/t prompting several plants to restart
(Figure 1; GBL market data).
Butanol titre and yieldThe butanol titre and yield that can be achieved are
largely a function of the microbe. Performance can be
improved using chemical mutagenesis, specific genetic
manipulation or a combination of both techniques. To
date, Clostridium acetobutylicum ATCC 824 remains the
best studied and manipulated strain although this species
group is quite distinct, both genetically and physiologi-
cally, from the three other main solvent producing
species: C. saccharobutylicum, C. beijerinckii and C. sacchar-operbutylacetonicum [5]. Proven commercial strains include
C. saccharobutylicum P262 and C. beijerinckii P260, which
were used in South Africa in the early 1980s [11]. Rather
than focus on just a single one strain Green Biologics Ltd
(GBL) (http://www.greenbiologics.com) has built a large
collection of strains representing the four main species
groups. Strains are selected based on performance against
specific substrates and developed for growth and fermen-
tation on specific feedstocks.
Following the publication of the genome sequence of C.acetobutylicum ATCC 824 in 2001 [12], significant progress
has been made using specific gene integration and anti-
sense RNA technology to knockout or down regulate
gene expression and better understand gene function.
Advances in genomics, transcriptomics and genetic
manipulation have been extensively reviewed by Durre
[13], Lee et al. [14�] and Papoutsakis [15�]. More recently,
proteomic reference maps have been developed for acido-
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
Table 2
Summary of chemically mutated and genetically engineered solvento
Strain Host strain Solvent titre (g/L) Butano
PJC4BK C. acetobutylicum
ATCC 824
23.7 16.7
SolRH (ptAAD) C. acetobutylicum
ATCC 824
27.9 17.6
BA101 C. beijerinckii
NCIMB 8052
24.2–26.1 15.8–19
EA2018 C. acetobutylicum
(strain 4)
21 14.4
www.sciencedirect.com
genic and solventogenic cultures [16] together with insilico genome models [17–19]. Genetic advances in other
strains have lagged. For example, the genome sequence
of C. beijerinckii NCIMB 8052 was only completed in 2007
(http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&
cmd=search&term=NC_00961721) and tools for genetic
engineering this strain have not been fully developed.
For C. acetobutylicum, significant advances have been
made to methods for gene integration. Methods based
on a group II intron system for gene knockout have been
described [20,21�]. More recently an improved method,
based on allele coupled exchange (ACE), has been
described for stable integration of larger DNA fragments
[22��]. It is now possible to construct multi-step biosyn-
thetic pathways paving the way for new synthetic clos-
tridia.
Table 2 summarizes the best chemically mutated or
genetically engineered solventogenic clostridia strains
recorded in the literature. These include C. beijerinckiiBA101, a hyper-butanol producer, developed in 1991
using chemical mutagenesis [23]. TetraVitae Bioscience
(http://www.tetravitae.com) has licensed this strain from
the University of Illinois for commercial use. Strain
EA2018 was also developed using chemical mutagenesis
of C. acetobutylicum and found to produce higher buta-
nol:solvent ratios (0.7) than the parental strain (0.6) [24].
This strain has been licensed to several commercial
producers in China (GBL market data). The acetone
pathway has also been knocked out in this strain resulting
in higher butanol:solvent ratios (0.8) but no overall
increase in higher butanol titre was observed [25].
Superior performance has also been demonstrated from
genetically engineered derivatives of C. acetobutylicumATCC 824 [26,27].
Synthetic biology has recently been used to introduce
biosynthetic capacity for butanol into non-natural hosts.
The choice between using or engineering natural func-
tion versus importing biosynthetic function has been
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
genic clostridia displaying improved solvent titre
l titre (g/L) Details Reference
The buk gene encoding butyrate
kinase has been inactivated.
[27]
The solR regulatory gene
has been inactivated and the gene
encoding aldehyde/alcohol
dehydrogenase has been
overexpressed.
[26]
.6 Chemical mutagenesis with
N-methyl-N9-nitro-N-nitrosoguanidine.
[23]
Chemical mutagenesis. This strain
produces an A:B:E ratio of 2:7:1.
[24]
Current Opinion in Biotechnology 2011, 22:1–7
4 Energy biotechnology
COBIOT-862; NO. OF PAGES 7
reviewed [28�]. Commonly used host strains include
Escherichia coli and Saccharomyces cerevisiae that are rela-
tively easy to genetically manipulate but do not tolerate
more than 2% 1-butanol [29]. In addition, these strains do
not display broad substrate ranges and cannot compete
with natural or engineered clostridia for the production of
1-butanol from a broad range substrates including pentose
sugars and sugars derived from cellulosic feedstocks.
Isobutanol is a more promising product because it is less
toxic than 1-butanol. It is an attractive biofuel but cannot
substitute for 1-butanol in the chemical market. One
synthetic approach involves the introduction of genes
encoding enzymes that convert either acetyl-CoA or
pyruvate to butanol. Alternatively, genes encoding
enzymes that convert 2-keto acids intermediates (from
amino acid synthesis) into isobutanol and branched-chain
alcohols; 2-methyl-1-butanol and 3-methyl-1-butanol can
be introduced [30�,31,32]. Several companies are cur-
rently involved in scale-up and demonstration. Gevo
Inc. (http://www.gevo.com) has engineered E. coli to
produce isobutanol [33] and recently acquired a com-
mercial-scale ethanol plant in Minnesota for retrofit to
produce isobutanol. The company has also received
Environmental Protection Agency certification to blend
isobutanol in fossil fuels. DuPont has also engineered
several biocatalysts for isobutanol [34] and assigned the
technology to ButamaxTM Advanced Biofuels (http://
www.butamax.com), a joint venture between BP and
Dupont. ButamaxTM is collaborating with Kingston
Research Limited, another BP–Dupont joint venture,
to build a demonstration plant in the UK.
FeedstocksToday, the ABE fermentation process is economic on
starch and sugar based feedstocks if 1-butanol is sold at a
premium into the chemical market (GBL model data).
Significant cost reduction can be achieved using cheaper
agricultural residues or wastes such as corn cobs, corn
stover, sugar cane bagasse, wheat straw and municipal
solid waste (MSW) that should enable 1-butanol to com-
pete, on price, with ethanol for the biofuel market. Also,
use of cellulosic and waste material is more sustainable
offering a lower carbon footprint and reduced green house
gas (GHG) emissions.
Solventogenic clostridia are particularly well suited for
fermenting sugars derived from cellulosic feedstocks.
They have a broad substrate range including pentose
sugars [2] and tolerate many known growth inhibitors
formed during the pre-treatment and hydrolysis. A recent
review provides comprehensive information on both
feedstock and end product inhibition in a variety of
fermentative microbes together with strategies to
improve strain tolerance [35��]. Interestingly, furans
(formed from sugar degradation) and lactic acid were
found to stimulate butanol production in clostridia [9,36].
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
Current Opinion in Biotechnology 2011, 22:1–7
Recent work with cellulosic feedstocks has focused on C.saccharobutylicum P262, C. beijerinckii P260 and C. beijer-inckii BA101. Good fermentation performance data have
been demonstrated on corn fibre [37], wheat straw [38]
and dried distillers grains and solubles [39]. Other reports
describe methods for desalting and detoxifying wheat
straw and corn stover hydrolysates that result in improved
fermentation performance [40,41]. Further improve-
ments have been demonstrated by combining hydrolysis
and fermentation in a consolidated bioprocess and by
integrating a method for in situ solvent recovery, based on
gas stripping [42,43].
Solventogenic clostridia produce good solvent yields and
titres from a wide range of cellulosic material [44�] but
demonstration of the technical and economic feasibility
of cellulosic butanol at scale is required. In particular, the
cost of enzymatic hydrolysis of cellulose is still proble-
matical although there is considerable scope to optimize
the enzyme cocktail specifically for clostridia thereby
reducing the cost. An attractive option is to use the
pentose sugar rich hemi-cellulose streams resulting from
agricultural, paper pulp and wood processing plants.
Typically, this fraction does not require hydrolysis but
may still require some detoxification to reduce growth
inhibitors. This approach for ABE production has been
demonstrated in China by Songyuan Laihe Chemicals. A
600 t pa pilot plant has been built to ferment sugars
contained within the hemi-cellulose fraction from pre-
treated corn stover (http://english.ipe.cas.cn/ns/Events/
200911/t20091125_47623.html). Plans are now underway
to demonstrate this process at commercial scale.
Volumetric productivityVolumetric solvent productivity (g solvent/L fermenta-
tion broth/h) has a big impact on capital cost. For
example, a two-fold increase in productivity reduces
capital expenditure by approximately 20% together with
significant reductions in operating costs (unpublished
GBL model data).
The Chinese semi-continuous fermentation process
offers 40% higher solvent productivity than a convention-
al batch process [6�]. Continuous culture, over a pro-
longed period, offers even greater improvements in
productivity but this is difficult to achieve because sol-
vent production in strains such as C. acetobutylicum tends
to degenerate over time [45]. Also the fermentation is
biphasic and maintenance of the culture in just the
solventogenic phase is difficult. A new method, based
on flow cytometry, provides some insight into the
relationship between morphology and solvent production
and could help monitor and control solventogenic cell
populations for stable continuous culture [46�].
Recently, a continuous culture system, fed with lactic
acid and glucose and using a pH-stat to control dilution
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
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Fermentative production of butanol—the industrial perspective Green 5
COBIOT-862; NO. OF PAGES 7
rate, produced 5.5 g/L butanol at a productivity rate of
1.76 g/L/h [36]. Significant improvements have also been
demonstrated using high dilution rates and immobiliz-
ation to retain the microbe in the vessel [47–49]. A biofilm
bioreactor offering higher productivity is under develop-
ment by Cobalt Technologies (http://www.cobalttech.
com). However, immobilized systems tend to produce
low solvent titres that are expensive to recover and they
tend to suffer from operational problems with high solid
feedstock loadings. An alternative approach involving a
two-stage continuous fermentation process that produces
butyric acid and then 1-butanol with a different bacterial
strain in each vessel has been developed by Butylfuel
(http://www.butanol.com) [50].
Solvent recoverySolvent recovery using conventional distillation is robust
and proven but energy intensive. For every 1 t of solvent,
approximately 12 t of steam is required [6�]. Improve-
ments can be made to conventional distillation but non-
conventional methods are required to significantly reduce
energy and the associated cost.
Integrating solvent recovery with fermentation is an
attractive process option. Gas stripping was found to
alleviate end product inhibition and improve both solvent
titre and productivity [51]. Other methods for solvent
recovery include liquid–liquid extraction, adsorption,
pervaporation, reverse osmosis and aqueous two phase
separation. These methods have been extensively
reviewed [52,53�] but few have been proven at scale or
commercialized to date.
For isobutanol, the use of oleyl alcohol extractive tech-
nology coupled with gas stripping has been patented by
Dupont [54]. An alternative GIFTTM process using flash
distillation followed by phase separation has been devel-
oped by Gevo Inc. [33]. However, continuous operation
using flash distillation may be difficult to control due to
fluctuations in substrate and product concentration and
the need to maintain a thermodynamic equilibrium in the
flash tank [55].
ConclusionsThe clostridial ABE fermentation is an old, but proven,
industrial fermentation process that has recently been
re-established in China. Newly installed production
capacity can be optimized and expanded with further
improvements to the microbe and refinements to the
fermentation process. Over time, it should be possible
to convert plants to use cheaper cellulosic feedstocks.
Also, the clostridial ABE fermentation process is rela-
tively simple and can be performed in existing sugar or
starch ethanol plants with little modification. This
retrofit model provides an attractive option to rapidly
expand renewable 1-butanol production in the US and
Brazil.
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
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The chemical market for 1-butanol provides an excellent
entry point because the value is approximately three-fold
higher than the value, likely to be achieved, in the biofuel
market.
The chemical demand is approximately 3 million t pa. If
biobutanol completely substitutes for synthetic butanol
in this market this would require at least fifty world scale
ABE plants.
In order to penetrate the larger biofuel market, bio-
butanol needs to compete on cost (priced on an energy
basis) with ethanol despite its superior fuel properties.
Reduction in feedstock cost offers the best opportunity
especially since clostridia are well suited for sugars
derived from cellulosic material. Clostridia have broad
substrate ranges (including pentose sugars) and display
superior tolerance to typical feedstock inhibitors.
An alternative approach for the biofuel market resides
with isobutanol using a synthetic microbe. However, it is
still unclear how robust and economic these processes are
at commercial scale and whether they can accommodate
cellulosic feedstocks. Further advances for both 1-butanol
and isobutanol are likely to come from the deployment of
continuous culture, especially when coupled with in situmethods for solvent extraction and recovery.
The application of advances in biotechnology and engin-
eering to the clostridia ABE fermentation process will
drive down the cost of 1-butanol production. Several
technology companies have become established to capi-
talize on this opportunity. The choice of strain is crucial
since it determines fermentation performance and heav-
ily influences methods for feedstock pre-treatment/
hydrolysis and solvent recovery. Microbial strain perform-
ance can be improved using advances in genetic manip-
ulation together with improved genome sequence
information and systems-based tools but the work does
need to focus on commercially relevant and robust strains.
Synthetic biology of non-butanol producing hosts is an
exciting longer term prospect but advances also require
robust host strains capable of tolerating high solvent
concentrations and feedstock inhibitors.
AcknowledgementsThe author would like to acknowledge his colleagues at Green BiologicsLimited: Rosa Dominguez, Elizabeth Jenkinson and Preben Krabben forhelp preparing this manuscript.
References and recommended readingPapers of particular interest, published within the period of review,have been highlighted as:
� of special interest
�� of outstanding interest
1. Cascone R: Biobutanol—a replacement for bioethanol? ChemEng Prog 2008:S4-S9.
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
Current Opinion in Biotechnology 2011, 22:1–7
6 Energy biotechnology
COBIOT-862; NO. OF PAGES 7
2. Jones DT, Woods DR: Acetone–butanol fermentation revisited.Microbiol Rev 1986, 50:484-524.
3. Chiao JS, Sun ZH: History of the acetone–butanol–ethanolfermentation industry in China: development of continuousproduction technology. J Mol Microbiol Biotechnol 2007,13:12-14.
4. Jones DT, Keis S: Origins and relationships of industrial solventproducing clostridial strains. FEMS Microbiol Rev 1995,17:223-232.
5. Zverlov VV, Berezina O, Velikodvorskaya GA, Schwarz WH:Bacterial acetone and butanol production by industrialfermentation in the Soviet Union: use of hydrolyzedagricultural waste for biorefinery. Appl Microbiol Biotechnol2006, 71:587-597.
6.�
Ni Y, Sun Z: Recent progress on industrial fermentativeproduction of acetone–butanol–ethanol by Clostridiumacetobutylicum in China. Appl Microbiol Biotechnol 2009,83:415-423.
This article reviews commercial progress in China. It provides informationon recent strain developments together with detailed information onfermentation process configuration and performance together with aneconomic assessment. This review also addresses current challengeswith the ABE process.
7. Zheng YN, Li LZ, Xian M, Ma YJ, Yang JM, Xu X, He DZ: Problemswith the microbial production of butanol. J Ind MicrobiolBiotechnol 2009, 36:1127-1138.
8. Ezeji TC, Qureshi N, Blaschek HP: Bioproduction of butanol frombiomass: from genes to bioreactors. Curr Opin Biotechnol 2007,18:220-227.
9. Kharkwal S, Karimi IA, Chang MW, Lee DY: Strain improvementand process development for biobutanol production. RecentPat Biotechnol 2009, 3:202-210.
10. Pfromm PH, Amanor-Boadu V, Nelson R, Vadlani P, Madl R: Bio-butanol vs. bio-ethanol: a technical and economicassessment for corn and switchgrass fermented by yeast orClostridium acetobutylicum. Biomass Bioenergy 2010,34:515-524.
11. Keis S, Shaheen R, Jones DT: Emended descriptions ofClostridium acetobutylicum and Clostridium beijerinckii, anddescriptions of Clostridium saccharoperbutylacetonicum sp.nov. and Clostridium saccharobutylicum sp. nov. Int J Syst EvolMicrobiol 2001, 51:2095-2103.
12. Nolling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q,Gibson R, Lee HM, Dubois J, Qiu D, Hitti J et al.: Genomesequence and comparative analysis of the solvent-producingbacterium Clostridium acetobutylicum. J Bacteriol 2001,183:4823-4838.
13. Durre P: Fermentative butanol production: bulk chemical andbiofuel. Ann N Y Acad Sci 2008, 1125:353-362.
14.�
Lee SY, Park JH, Jang SH, Nielsen LK, Kim J, Jung KS:Fermentative butanol production by Clostridia. BiotechnolBioeng 2008, 101:209-228.
The authors review metabolic engineering in Clostridia. The deploymentof systems-level metabolic engineering of strains based on genomesequence information and improved genetic tools offers tremendouscommercial potential. Strain development should be an integral part ofthe fermentation and downstream solvent recovery process.
15.�
Papoutsakis ET: Engineering solventogenic clostridia. CurrOpin Biotechnol 2008, 19:420-429.
This review focuses on the development of tools for metabolic engineer-ing. It provides strain specific solutions to overcome limitations such asaero tolerance, solvent tolerance, low cell density and sporulation.
16. Janssen H, Doring C, Ehrenreich A, Voigt B, Hecker M, Bahl H,Fischer RJ: A proteomic and transcriptional view of acidogenicand solventogenic steady-state cells of Clostridiumacetobutylicum in a chemostat culture. Appl MicrobiolBiotechnol 2010, 87:2209-2226.
17. Lee J, Yun H, Feist AM, Palsson BØ, Lee SY: Genome-scalereconstruction and in silico analysis of the Clostridiumacetobutylicum ATCC 824 metabolic network. Appl MicrobiolBiotechnol 2008, 80:849-862.
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
Current Opinion in Biotechnology 2011, 22:1–7
18. Senger RS, Papoutsakis ET: Genome-scale model forClostridium acetobutylicum: Part I. Metabolic networkresolution and analysis. Biotechnol Bioeng 2008,101:1036-1052.
19. Senger RS, Papoutsakis ET: Genome-scale model forClostridium acetobutylicum: Part II. Development of specificproton flux states and numerically determined sub-systems.Biotechnol Bioeng 2008, 101:1053-1071.
20. Shao L, Hu S, Yang Y, Gu Y, Chen J, Yang Y, Jiang W, Yang S:Targeted gene disruption by use of a group II intron (targetron)vector in Clostridium acetobutylicum. Cell Res 2007:1-3.
21.�
Heap JT, Kuehne SA, Ehsaan M, Cartman ST, Cooksley CM,Scott JC, Minton NP: The ClosTron: mutagenesis in Clostridiumrefined and streamlined. J Microbiol Methods 2010, 80:49-55.
The original ClosTron Group II intron directed mutagenesis tool forClostridium has been improved. Marker recycling has been used togenerate multiple mutations. In addition the host range has beenextended to include new species such as C. beijerinckii. The tool is moreefficient, faster and cost effective than its predecessor.
22.��
Heap JT, Minton NP: Methods. International Patent Application2009, PCT/GB2009/000380.
A method for double crossover homologous recombination in a host cellin which the second homologous recombination event generates aselectable allele. This method is relatively simple and can be used, forthe first time, to introduce large fragments of DNA into solventogenicClostridium and create new biosynthetic pathways.
23. Annous BA, Blaschek HP: Isolation and characterization ofClostridium acetobutylicum mutants with enhancedamylolytic activity. Appl Environ Microbiol 1991,57:2544-2548.
24. Zhang Y, Yang Y, Chen J: High-butanol ratio Clostridiumacetobutylicum culturing method and its use. Chinese Patent1997, CN 1063483C.
25. Jiang Y, Xu C, Dong F, Yang Y, Jiang W, Yang S: Disruption of theacetoacetate decarboxylase gene in solvent-producingClostridium acetobutylicum increases the butanol ratio. MetabEng 2009, 11:284-291.
26. Harris LM, Blank L, Desai RP, Welker NE, Papoutsakis ET:Fermentation characterization and flux analysis ofrecombinant strains of Clostridium acetobutylicum with aninactivated solR gene. J Ind Microbiol Biotechnol 2001,27:322-328.
27. Harris LM, Desai RP, Welker NE, Papoutsakis ET:Characterization of recombinant strains of the Clostridiumacetobutylicum butyrate kinase inactivation mutant: need fornew phenomenological models for solventogenesis andbutanol inhibition? Biotechnol Bioeng 2000, 67:1-11.
28.�
Alper H, Stephanopoulos G: Engineering for biofuels: exploitinginnate microbial capacity or importing biosynthetic potential?Nat Rev Microbiol 2009, 7:715-723.
This review highlights factors that influence the decision to engineernatural function or import synthetic pathways. The authors argue thattransfer of new biological function to a basic recombinant microorgan-ism is more promising than upgrading the properties of a native micro-organism.
29. Knoshaug EP, Zhang M: Butanol tolerance in a selection ofmicroorganisms. Appl Biochem Biotechnol 2009, 153:13-20.
30.�
Connor MR, Liao JC: Microbial production of advancedtransportation fuels in non-natural hosts. Curr Opin Biotechnol2009, 20:307-315.
This review details synthetic biology methodologies to produce biofuels innon-natural hosts. The authors conclude that apart from isobutanol, theyield, titre and productivity from new synthetic hosts are not commerciallyviable.
31. Steen EJ, Chan R, Prasad N, Myers S, Petzold CJ, Redding A,Ouellet M, Keasling JD: Metabolic engineering ofSaccharomyces cerevisiae for the production of n-butanol.Microb Cell Fact 2008, 7:36.
32. Nielsen DR, Leonard E, Yoon SH, Tseng HC, Yuan C, Prather KL:Engineering alternative butanol production platforms inheterologous bacteria. Metab Eng 2009, 11:262-273.
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
www.sciencedirect.com
Fermentative production of butanol—the industrial perspective Green 7
COBIOT-862; NO. OF PAGES 7
33. Evanko WA, Eyal AM, Glassner DA, Miao F, Aristidou A, Evans K,Gruber PR, Hawkins AC: Recovery of higher alcohols fromdilute aqueous solutions. International Patent Application 2009,PCT/US2008/088187.
34. Donaldson GK, Eliot AC, Flint D, Maggio-Hall A, Nagarajan V:Fermentative production of four carbon alcohols. US Patent2010, 7,851,188.
35.��
Nicolaou SA, Gaida SM, Papoutsakis ET: A comparative view ofmetabolite and substrate stress and tolerance in microbialbioprocessing: from biofuels and chemicals, to biocatalysisand bioremediation. Metab Eng 2010, 12:307-331.
A comprehensive review with information on both feedstock and endproduct inhibition in a variety of fermentative microbes together withstrategies to improve strain tolerance and performance.
36. Oshiro M, Hanada K, Tashiro Y, Sonomoto K: Efficientconversion of lactic acid to butanol with pH-stat continuouslactic acid and glucose feeding method by Clostridiumsaccharoperbutylacetonicum. Appl Microbiol Biotechnol 2010,87:1177-1185.
37. Qureshi N, Ezeji TC, Ebener J, Dien BS, Cotta MA, Blaschek HP:Butanol production by Clostridium beijerinckii: Part I. Use ofacid and enzyme hydrolyzed corn fiber. Bioresour Technol2008, 99:5915-5922.
38. Qureshi N, Saha BC, Cotta MA: Butanol production from wheatstraw hydrolysate using Clostridium beijerinckii. BioprocessBiosyst Eng 2007, 30:419-427.
39. Ezeji T, Blaschek HP: Fermentation of dried distillers’ grainsand solubles (DDGS) hydrolysates to solvents and value-added products by solventogenic clostridia. Bioresour Technol2008, 99:5232-5242.
40. Qureshi N, Saha BC, Hector RE, Cotta MA: Removal offermentation inhibitors from alkaline peroxide pretreatedand enzymatically hydrolyzed wheat straw: production ofbutanol from hydrolysate using Clostridium beijerinckiiin batch reactors. Biomass Bioenergy 2008,32:1353-1358.
41. Wang L, Chen H: Increased fermentability of enzymaticallyhydrolyzed steam-exploded corn stover for butanolproduction by removal of fermentation inhibitors. ProcessBiochem 2011, 46:604-607.
42. Qureshi N, Saha BC, Hector RE, Hughes SR, Cotta MA: Butanolproduction from wheat straw by simultaneoussaccharification and fermentation using Clostridiumbeijerinckii: Part I. Batch fermentation. Biomass Bioenergy2008, 32:168-175.
43. Qureshi N, Saha BC, Cotta MA: Butanol production from wheatstraw by simultaneous saccharification and fermentationusing Clostridium beijerinckii: Part II. Fed-batch fermentation.Biomass Bioenergy 2008, 32:176-183.
44.�
Qureshi N: Agricultural residues and energy crops aspotentially economical and novel substrates for microbialproduction of butanol (a biofuel). CAB Rev 2010, 5:.
Please cite this article in press as: Green EM. Fermentative production of butanol—the industria
www.sciencedirect.com
A summary of fermentation performance with several solventogenicclostridial strains on a variety of cellulosic residues. The review demon-strates the versatility and potential of using solventogenic clostridia withlow cost cellulosic feedstocks.
45. Cornillot E, Nair RV, Papoutsakis ET, Soucaille P: The genes forbutanol and acetone formation in Clostridium acetobutylicumATCC 824 reside on a large plasmid whose loss leads todegeneration of the strain. J Bacteriol 1997, 179:5442-5447.
46.�
Tracy BP, Gaida SM, Papoutsakis ET: Development andapplication of flow-cytometric techniques for analyzing andsorting endospore-forming clostridia. Appl Environ Microbiol2008, 74:7497-7506.
This paper describes a new method based on flow cytometry lightscattering for understanding the link between morphology and butanolproduction. The authors propose a clostridial-form precursor rather thanthe clostridial-form itself is the cellular morphology responsible for solventproduction.
47. Zhang Y, Ma Y, Yang F, Zhang C: Continuous acetone–butanol–ethanol production by corn stalk immobilized cells. J IndMicrobiol Biotechnol 2009, 36:999-1126.
48. Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P:Butanol production by Clostridium acetobutylicum in acontinuous packed bed reactor. J Ind Microbiol Biotechnol2010, 37:603-608.
49. Contag PR, Burns-Guydish SM, Meerman HJ, Walther DC, ChenJC, Maddox I, Nienow AW: Enhanced ABE fermentation withhigh yielding butanol tolerant Clostridium strains. UK PatentApplication 2008, 2459756A.
50. Ramey, DE: Continuous two stage, dual path anaerobicfermentation of butanol and other organic solvents using twodifferent strains of bacteria. US Patent 1998, US5753474.
51. Ezeji TC, Karcher PM, Qureshi N, Blaschek HP: Improvingperformance of a gas stripping-based recovery system toremove butanol from Clostridium beijerinckii fermentation.Bioprocess Biosyst Eng 2005, 27:207-214.
52. Ezeji TC, Li Y: Advanced product recovery technologies. InBiomass to Biofuel. Edited by Vertes A, Qureshi N, Yukawa H,Blaschek H. Wiley; 2010:331-345.
53.�
Vane LM: Separation technologies for the recovery anddehydration of alcohols from fermentation broths. BiofuelsBioprod Bioref 2008 doi: 10.1002/bbb.108.
This extensive review describes the advantages and disadvantagesassociated with the many methods for integrated product recovery.Opportunities do exist to challenge distillation for low alcohol concentra-tions but new methods need to be proven at scale.
54. Grady MC, Jahic M, Patnaik R: A method for producing butanolusing two-phase extractive fermentation. International PatentApplication 2009, PCT/US/2009/046278.
55. Mariano AP, de Angelis D, Filho FM, Atala DIP, Maciel MRW,Filho RM: An alternative process for butanol production:continuous flash fermentation. Chem Prod Proc Model 2008, 3:Article 34. doi:10.2202/1934-2659.1226.
l perspective, Curr Opin Biotechnol (2011), doi:10.1016/j.copbio.2011.02.004
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