faculty of science spectrofluorimetry lecture notes

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Spectrofluorimetry Lecture

notes

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Copyright Statement

• Images used in this work are distributed under the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation;

• Solution structure of a trans-opened (10S)-dA adduct of +)-(7S,8R,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA duplex is by Richard Wheeler (Zephyris) 2007 under the same license.

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LUMINESCENCE SPECTROSCOPY

• The emission of radiation from a species after that species has absorbed radiation.

LUMINESCENCE

FLUORESCENCE

PHOSPHORESCENCESPECTROSCOPY

CHEMILUMINESCENCE

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• In favorable cases, luminescence methods are amongst some of the most sensitive and selective of analytical methods available.

• Detection Limits are as a general rule at ppm levels for absorption spectrophotometry and ppb levels for luminescence methods.

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• Collectively, fluorescence and phosphorescence are known as photoluminescence.

• A third type of luminescence - Chemiluminescence - is based upon emission of light from an excited species formed as a result of a chemical reaction.

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• Most chemical species are not naturally luminescent.

• Derivatisation reactions are often available to form luminescent derivatives of non-luminescent compounds.

• However, this extra step lessens the attractiveness of luminescence methods.

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• Fluorimetry is the most commonly used luminescence method. Phosphorimetry usually requires at liquid nitrogen temperatures (77K).

• The terms fluorimetry and fluorometry are used interchangeably in the chemical literature.

• Chemiluminescence won’t be further discussed in PCB314

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Energy Level Diagram

s2

SINGLET STATES TRIPLET STATES

GroundState

s1 T

T

1

2

INTERSYSTEMCROSSING

VIBRATIONALRELAXATION

FLUORESCENCE PHOSPHORESCENCE

INTERNALCONVERSION CONVERSION

INTERNAL

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Fluorescence and Phosphorescence - 1

• Following absorption of radiation, the molecule can lose the absorbed energy by several pathways. The particular pathway followed is governed by the kinetics of several competing reactions.

(Note: in the next slides 1- 10 you need to identify each slide with its place with the energy level diagram from the previous slide)

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• One competing process is vibrational relaxation which involves transfer of energy to neighbouring molecules which is very rapid in solution (10-13 sec).– In the gas phase, molecules suffer fewer

collisions and it is more common to see the emission of a photon equal in energy to that absorbed in a process known as resonance fluorescence.

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• In solution, the molecule rapidly relaxes to the lowest vibrational energy level of the electronic state to which it is excited (in this case S2). The kinetically favoured reaction in solution is then internal conversion which shifts the molecule from S2 to an excited vibrational energy level in S1.

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• Following internal conversion, the molecule loses further energy by vibrational relaxation. Because of internal conversion and vibrational relaxation, most molecules in solution will decay to the lowest vibrational energy level of the lowest singlet electronic state before any radiation is emitted.

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• When the molecule has reached the lowest vibrational energy level of the lowest singlet electronic energy level then a number of events can take place:

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• the molecule can lose energy by internal conversion without loss of a photon of radiation, however, this is the least likely event;

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• the molecule can emit a photon of radiation equal in energy to the difference in energy between the singlet electronic level and the ground-state, this is termed fluorescence;

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• the molecule can undergo intersystem crossing which involves and electron spin flip from the singlet state into a triplet state. Following this the molecule decays to the lowest vibrational energy level of the triplet state by vibrational relaxation;

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• the molecule can then emit a photon of radiation equal to the energy difference between the lowest triplet energy level and the ground-state in a process known as phosphorescence.

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• In fluorescence, the lifetime of the molecule in the excited singlet state is 10-9 to 10-7 sec.

• In phosphorescence, the lifetime in the excited singlet state is 10-6 to 10 sec (because a transition from T1 to the ground state is spin forbidden).

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Quantum Efficiency

• Fluorescence, phosphorescence and internal conversion are competing processes. The fluorescence quantum efficiency and the phosphorescence quantum efficiency are defined as the fraction of molecules which undergo fluorescence and phosphorescence respectively.

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CONCENTRATION AND FLUORESCENCE INTENSITY • The power of fluorescent radiation, F, is

proportional to the radiant power of the excitation beam absorbed by the species able to undergo fluorescence:

F = K'(P0 - P)

where P0 is the power incident on the sample, P is the power after it traverses a length b of the solution and K' is a constant which depends upon experimental factors and the quantum efficiency of fluorescence.

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CONCENTRATION AND FLUORESCENCE INTENSITY• Beer's law can be rearranged to give:

P/P0 = 10-bc

where A = bc is the absorbance. Substitution gives:

F = K'P0(1 - 10- bc)• This is the fluorescence law • Unlike Beer’s Law fluorescence isn’t in

general linear with concentration.

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CONCENTRATION AND FLUORESCENCE INTENSITY• This expression can be expanded (Taylor series):

• To a good approximation if bc is small (< 0.05) the higher-order terms are nearly zero, we have:

F = 2.3K'bcP0

!3

)3.2(

2!

)3.2(-3.2 =

32

0

bcbcbcPKF

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CONCENTRATION AND FLUORESCENCE INTENSITY

which demonstrates two important points:

• that at low concentrations fluorescence intensity is proportional to concentration;

• that fluorescence is proportional to the incident power in the incident radiation at the absorption frequency.

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CONCENTRATION AND FLUORESCENCE INTENSITY

F

Conc. of fluorescing species

c1

For a concentration above c1 the calibration curve is no longer linear.

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INSTRUMENTATIONSOURCE

EXCITATIONWAVELENGTHSELECTOR

EMISSIONWAVELENGTHSELECTOR

DETECTOR

SAMPLE

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INSTRUMENTATION

• The fluorescence is often viewed at 90° orientation (in order to minimise interference from radiation used to excite the fluorescence).

• The exciting wavelength is provided by an intense source such as a xenon arc lamp (remember F P0).

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INSTRUMENTATION

• Because An intense monochromatic light source is required ...

• Lasers are an almost ideal light source for fluorimetry (laser-induced fluorescence) but are too expensive and/or impractical for most routine applications.

• Two wavelength selectors are required filters (in fluorimeters) and monochromators (in spectrofluorometers).

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Types of Fluorescent Molecules

• Experimentally it is found that fluorescence is favoured in rigid molecules, eg., phenolphthalein and fluorescein are structurally similar as shown below. However, fluorescein shows a far greater fluorescence quantum efficiency because of its rigidity.

•phenolphthalein

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Types of Fluorescent Molecules

• It is thought that the extra rigidity imparted by the bridging oxygen group in Fluorescein reduces the rate of nonradiative relaxation so that emission by fluorescence has sufficient time to occur.

Fluorescein

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APPLICATIONS

A. Determination of polyaromatic hydrocarbons

– Benzo[a]pyrene is a product of incomplete combustion and found in coal tar.

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APPLICATIONS• Benzo[a]pyrene, is a 5-

ring polycyclic aromatic hydrocarbon that is mutagenic and highly carcinogenic

• It is found in tobacco smoke and tar

• The epoxide of this molecule intercalates in DNA, covalently bonding to the guanine base nucleotide

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APPLICATIONS

Excitation and fluorescence spectra for benzo(a)pyrene in H2SO4. In the diagram the solid line is the excitation spectrum (the fluorescence signal is measured at 545 nm as the exciting wavelength is varied). The dashed line is the fluorescence spectrum (the exciting wavelength is fixed at 520 nm while the wavelength of collected fluorescence is varied).

Benzo(a)pyrene

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APPLICATIONS

B. Fluorimetric Drug Analysis

• Many drugs possess high quantum efficiency for fluorescence. For example, quinine can be detected at levels below 1 ppb. Quinine

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APPLICATIONS

• In addition to ethical drugs such as quinine, many drugs of abuse fluoresce directly. For example lysergic acid diethylamide (LSD) whose structure is:

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APPLICATIONS

• Because LSD is active in minute quantities (as little as 50 g taken orally) an extremely sensitive methods of analysis is required. Fluorimetricaly LSD is usually determined in urine from a sample of about 5mL in volume. The sample is made alkaline and the LSD is extracted into an organic phase consisting of n-heptane and amyl alcohol. This is a "clean-up" procedure that removes potential interferents and increases sensitivity. The LSD is then back-extracted into an acid solution and measured directly using and excitation wavelength of 335 nm and a fluorescence wavelength of 435 nm. The limit of detection is approximately 1 ppb:

faculty of science spectrofluorimetry lecture notes

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