embl-abr_ agrf2016
TRANSCRIPT
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A/Prof Vicky Schneider Deputy DirectorA/Prof Andrew Lonie DirectorDr Philippa Griffin Open Data Coordinator
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*http://www.nature.com/nature/journal/v498/n7453/pdf/498255a.pdf
Data infrastructure in the genomic era
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Digitalinfrastructureinthegenomicera
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History:Australiaisbiganddistant
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2010:EBIMirrorproject
MakingresearchtoolsanddataaccessibleinAustralia
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MakingresearchtoolsanddataaccessibleinAustralia
2010:EBIMirrorproject
Scalability?
EBI projection of infrastructure requirements 2015
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EMBL Australia Bioinformatics Resource (BRAEMBL)
Mission:
1. Ensure we have access to the tools and data we need to be globally competitive
2. Showcase Australian life science research
3. Advise, support and train
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How?
Hosting: critical tools and data
Supporting: through network of expertise and training
Contributing: Australian flagship science (incl tools)
Collaborating and participating: With world-leading institutes and initiatives (EBI, ELIXIR, BD2K)
ReFuGe 2020:Great Barrier Reef
Koala genome
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Key Areas
EMBL-ABR is the vehicle for the Australian Bioinformatics community to actively participate in world’s best practice bioinformatics, positioning our institutions at the forefront with international partners. Cyverse, ELIXIR, BD2K
.
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WhydoweneedEMBL-ABR?
Examples:• methods and tools: dev, longterm, adoption…
• Adoptability and adaptability ofExisting solutions OS: e.g. ENSEMBL annotation service
• FAIR data and data resources:AU data, flagship projects…
• Scalability and accessibility ofTraining
• Direct participation and ensuringAU needs are considered: standards
• Making the most of existing“hard” Infrastructure
1. Ensure Australia has access to the tools and data we need to be globally competitive
2. Showcase Australian life science research
3. Advise, support and train
CloudData Scalable@ 10-20 PBData
@ 1-2 PBHPC Capability @ > 1 Pf/sHPC
Specialised @ 100 Tf/sNetwork Layer-1 @ Nx100Gb
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National level bioinformatics?
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Key Areas
EMBL-ABR is the vehicle for the Australian Bioinformatics community to actively participate in world’s best practice bioinformatics, positioning our institutions at the forefront with international partners. Cyverse, ELIXIR, BD2K
.
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ELIXIR
European Research Infrastructure for Life Sciences
Arapidlyevolvinginternationalcontext
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EMBL Australian Bioinformatics Resource (EMBL-ABR) is a distributed national research infrastructure providing bioinformatics support
to life science researchers in Australia.
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EMBL-ABR aims to:
1. increase Australia’s capacity to collect, integrate, analyse, exploit, share and archive the large heterogeneous data sets now part of modern life sciences research.
2. contribute to the development of and provide training in data, tools and platforms to enable Australia’s life science researchers to undertake research in the age of big data.
3. showcase Australian research and datasets at an international level.
4. enable engagement in international programs that create, deploy and develop best practice approaches to data management, software tools and methods, computational platforms and bioinformatics services.
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Key Areas
EMBL-ABR is the vehicle for the Australian Bioinformatics community to actively participate in world’s best practice bioinformatics, positioning our institutions at the forefront with international partners. Cyverse, ELIXIR, BD2K
.
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EMBL-ABR started in its current form in Feb 2016
• hub – nodes network structure
• hub hosted at VLSCI, University of Melbourne
• 10 nodes at the institution/organisation level across Australia
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+ExecutiveTeam
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Paul FlicekLead, Vertebrate
Genomics & ENSEMBL
Jaap HeringaHead, ELIXIR-NL
Vivien BonazziSenior Advisor Data
Science Tech & Innovation
Jason WilliamsEducation, Outreach
and Training Lead
Andrew YoungDirector, National Research Collections Australia, ACT
Mark WalkerDirector, Aust Infectious Disease Res Centre, UQ
Delphine FleuryAus Centre for Plant
Functional Genomics, SA
Sean GrimmondDirector, Centre for UoM
Cancer Research, VIC
Rebecca JohnsonDirector, Australian Museum
Research Institute, NSW
Jenny MartinCo-Director, Breakthrough
Science Program, Centre for Superbug Solutions, UQ
International Scientific Advisory Group
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Thanks!
Madison Flannery
Developer
Simon GladmanResearch Scientist
Philippa GriffinOpen Data Coordinator
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Thank YOU J
www.embl-abr.org.au