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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Surface functionalization for plasmonic biosensors
Jean-Pierre Cloarec
20-24 juin 2016
![Page 2: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/2.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Outline• From transduction to biosensing…
• How surface functionalization influences yourbiosensor measurements
• Classical gold functionalization– Homogeneous thiolate SAMs : how it can disfunction. Gold
cleaning, gold oxydation, metal defects, …– Mixed SAMs
• Selective functionalization of multiple materials
• Conclusion
![Page 3: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/3.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Principle of an affinity biosensor
Transducer
Bioreceptor biomolecularprobeFunctionalization layer
biomoleculartarget
interferingmolecules
Measurable signal
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Implementing patterned transducing zones
Resist residues ?Porosity of implementedlayers ? Other contaminations ?
Image adapted from A. Duval, PhD Thesis, 2009
Spin coating
ResistExample: lithography
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Of surfaces and humans
• « God made the bulk,
Wolfgang Pauli but surface was invented by the devil »
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Surface chemistry 101
A substrate-binding headgroup
Sulfhydril (thiol)on gold : -SH
Silane on silica : -Si-(X)3
A spacer chain
Alkyl : -(CH2)n -
OEG : -(CH2-CH2-O)n -
Perfluorinated : -(CF2)n –
A functional headgroup
Target-binding on gold : -Biotin,
-COOH/NHS, -NH2
Anti-fouling on silica : -OCH3
-CF3
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
The trouble with surface chemistry : a diversity of bonds
Example of a simple
dipeptide
-
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Electrical / ionic organization of solid/liquid interface
local pH on the surface may bedifferent from the pH in bulk !
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
• Molecular flip-flaps• Physisorption
• Bulk polymerisation • Heterogeneity
• Entrapments• Non specific adsorption
SiO2
OSi
OSi
OSi
OSi
O- OO O-HH SiO N
H
SiOO
+H3N SiOO
ONH2
H
Si OO
NH3+
HH
SiO
+H3N
H
O
OSi
OSi
OSi
OSi
O
O O-O OH
H
Si O
OO
H2N
H
HH
HHH
G. Whitesides
A. Ulmann
OSi OSi OSi OSiO- OO O-HH SiO N
HSi
OO
+H3N SiOOO
NH2
HSi OO
NH3+
HH
SiO+H3N
HO
OSi OSi OSi OSi OO O-O OHH
Si OOO
H2NH
H H
HH H
OSi OSi OSi OSiO- OO O-HH SiO NH
SiOO
+H3N SiOOO
NH2
HSi OO
NH3+
HH
SiO
+H3NH
O
OSi OSi OSi OSi OO O-O OHH
Si OOO
H2NH
H H
HH H
OSi OSi OSi OSiO- OO O-HH SiO N
HSi
OO
+H3N SiOOO
NH2
HSi OO
NH3+
HH
SiO+H3N
HO
OSi OSi OSi OSi OO O-O OHH
Si OOO
H2NH
H H
HH H
OSi OSi OSi OSiO- OO O-HH SiO NH
SiOO
+H3N SiOOO
NH2
HSi OO
NH3+
HH
SiO
+H3NH
O
OSi OSi OSi OSi OO O-O OHH
Si OOO
H2NH
H H
HH H
OSi OSi OSi OSiO- OO O-HH SiO N
HSi
OO
+H3N SiOOO
NH2
HSi OO
NH3+
HH
SiO+H3N
HO
OSi OSiOSi OSi OO O-O OHH
Si OO
OSi OSi OSi OSiO- OO O-HH SiO NH
SiOO
+H3 N Si OOO
NH2H
Si OO HH
SiO+H3 NH
OOSi OSi OSi OSi O
O O-O O
H
H
Si OO
The trouble with surface chemistry…
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Outline• From transduction to biosensing…
• How surface functionalization influences yourbiosensor measurements
• Classical gold functionalization– Homogeneous thiolate SAMs : how it can disfunction. Gold
cleaning, gold oxydation, metal defects, …– Mixed SAMs
• Selective functionalization of multiple materials
• Conclusion
![Page 11: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/11.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Influence of functionalization on biosensing efficiency
Bare transducer
Transducer
Bioreceptor
Worst case
Best case
biomolecularprobeFunctionalization layer
biomoleculartarget
interferingmolecules
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Influence of functionalisation on biosensing efficiency
realistic case
biomolecularprobe
biomoleculartarget
interferingmolecules
inactive probe (e.g. denaturation)
Inaccessible probe
Unexpectedstuff on the surface
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
00.20.40.60.8
1
0 20 40 60Time
Sign
al
0
0.2
0.4
0.6
0.8
1
0 20 40 60Time
Sign
al
Influence of functionalisation on biosensing efficiency
Transducer
Bioreceptor
Bare transducerSpecific signal
Non specific signalGlobal signal
Global signal=Specific signal
Non specific signal
Worst case
Best case
Interfering molecule
probe
target
Functionalization layer
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
0
0.2
0.4
0.6
0.8
1
0 20 40 60Time
Sign
al
Realistic case
Specific signal
Non specific signal
Global signal
Targets are usually less concentrated than interfering species
Targets may have different properties compared to
interfering species (eg : mass is important for SPR analysis)
Interfering molecule
probe
target
Functionalization layer
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
SERS as a transduction method : how to get the targetsclose to the nano-antennas ?
Cottat et al., J. Phys. Chem. C 2015, 119, 15532−15540
Minimize the immobilization layerUse « small » biomolecular probes
Examples : thiolated DNA aptamersScFv antibody fragments
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Outline• From transduction to biosensing…
• How surface functionalization influences yourbiosensor measurements
• Classical gold functionalization– Homogeneous thiolate SAMs : how it can disfunction. Gold
cleaning, gold oxydation, metal defects, …– Mixed SAMs
• Selective functionalization of multiple materials
• Conclusion
![Page 17: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/17.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
An example of classical steps for functionalization : the case for a glass/gold/thiols SPR biosensor
Capping Blocking
Biomolecular recognition
CleaningChemical
functionalizationBiofunctionalization
gold goldglass
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Elaboration has to be characterized
Capping Blocking
Biomolecular recognition
CleaningChemical
functionalizationBiofunctionalization
gold goldglass
SPR
Blocking
XRD AFM
XPS FTIRContact angle
FTIRXPS
Assess each elaborationstep with adapted
characterization tools
SPR
FTIR SPR SERS SERS
SERS
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Surface characterization tools : example @ INL
Technique Chemical information
Lateralresolution
Other limitations
PM-IRRAS YES mm Only on metal
XPS YES µm AvailabilityToF-SIMS YES µm Availability
Fluorescence scan NO µm Only on dielectric
SEM NO nm -
AFM NO nm Scan area ≤ 50 ×50µm
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Outline• From transduction to biosensing…
• How surface functionalization influences yourbiosensor measurements
• Classical gold functionalization– Homogeneous thiolate SAMs : how it can disfunction. Gold
cleaning, gold oxydation, metal defects, …– Mixed SAMs
• Selective functionalization of multiple materials
• Conclusion
![Page 21: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/21.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Solid support
Solvent 1
adsorption
2 3 4
Self-Assembled Monolayers (SAM) : general mechanism of formation
Self-Assembled Monolayer
Diffusion on surface Interactions between alkyl chains
Ullman
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Self-Assembled Monolayers
Gold
Au Au Au Au AuAuAu
Alkylthiols
SH
R
SH
R
SH
R
SH
R
SH
R
SH
R
SH
R
Van der Waals interactions
iono-covalent bonds
Self-assembled monolayer (SAM)
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
SAMS defects : example of alkylthiols on gold supports
Love et al., Chemical Reviews, 2005
The quality of metal surface just beforeSAM formation is of primary importance
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Importance of surface cleaning
∗. G. Grenet, C. Botella, D. Ferrah
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
†. G. Grenet, C. Botella, D. Ferrah
Results : Wait for gold de-oxidation after plasma cleaning †
Cleaning can have side effects
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Outline• From transduction to biosensing…
• How surface functionalization influences yourbiosensor measurements
• Classical gold functionalization– Homogeneous thiolate SAMs : how it can disfunction. Gold
cleaning, gold oxydation, metal defects, …– Mixed SAMs
• Selective functionalization of multiple materials
• Conclusion
![Page 27: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/27.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Fonctionnalisation chimique de surfaces
Fonctionnalisation de surfaces homogènes avec SAM homogènes
Or
SH SH SH SH
Fonctionnalisation de surfaces homogènes avec SAM mixtes
Or
SH SH SH SH
2 thiols différents mélangés sur une même surface d’or
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Mixed SAMs chemical functionalizationSérie 1
Série 2
Refer to work of Claire-Marie Pradier’sgroup, Laboratoire de Réactivité des Surfaces, Paris
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Functionalization of gold with mixed SAMs : example
10 % EG6COOH90% EG3OMe
40% EG6COOH 60% Me
0.31 +/-0.05 0.1 +/- 0.04 1+/-0.2
EG6COOH
SPR : averaged shift on Wild type spots (%)
Activation
Immobilization of ODNHybridization target ODN
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Outline
• How surface functionalization influences your biosensor measurements ? – Sensors analytical performances… – …and how bioreceptor elaboration can influence it – From molecular interaction to non specific interactions
• Classical approaches– Homogeneous thiolate SAMs : how it can disfunction. Gold
cleaning, gold oxydation, metal defects, …– Capping, blocking– Mixed SAMs
• Selective functionalization of multiple materials
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
gold
silica
A B C
Low signal Low signal High signal
targets
probes
Selective surface functionalization
Repellingsurface
« Hot spot »
Example of Localized Surface Plasmon Resonancesensor
Palazon et al., Beilstein Journal of Nanotechnology 2015, 6, 2272–2277.
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Managing complexity…
When possible, use materials with intrinsincadapted surface properties (e.g. electric charge)
If necessary, use surface functionalization steps
Goal : use simultaneous, surface specificfunctionalization reactions
JP Cloarec ETPMSE 2016
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Selective functionalization of mixed surfaces
OrSH SH
Si
SiO2
Si Si Si
thiol
silane
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Orthogonal functionalization of bi-structured substrates
Palazon et al., Beilstein Journal of Nanotechnology 2015, 6, 2272–2277
White zones : goldDark zones : SiO2
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Orthogonal functionalization of bi-structured substrates
Palazon et al., Beilstein Journal of Nanotechnology 2015, 6, 2272–2277
White zones : goldDark zones : SiO2
![Page 36: Surface functionalization for plasmonic biosensors€¦ · Institut des Nanotechnologies de Lyon UMR CNRS 5270. ETPMSE 2016 JP Cloarec 23 juin 2016 . 0 0.2 0.4 0.6 0.8 1 0 20 40 60](https://reader033.vdocuments.mx/reader033/viewer/2022050521/5fa47b868c94976f4e76b8a8/html5/thumbnails/36.jpg)
Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Specific capture of microparticles on bi-structured substrate
Biotine-thiolPEG-silane
Streptavidine (fluo labeled)
Palazon et al. JCIS (2014)
NP+ Streptavidin
Biotin-thiol
NP+ carboxyls
Amine-thiol
Biotin-streptavidin affinity Electrostatic interactions
Nanoparticlescaptured on micronic size
zones
2 µm
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Interaction of bi-structured support with nanoparticles
Palazon et al., Journal of Colloid and Interface Science 447 (2015) 152–158
Matrix of nano-antenna (NA) on SiO2 support
Carboxy-latex NanoParticles (NP)
anchoredrepelled
100 nm
Gold dimer nanoantenna
Nanoparticle
1000 fabricated nano-antennas109 inspected by SEM
Capture of nanoparticleson nanoantennas
Very low non specificadsorption
~70 % of NA have captures a NPOnly 0.2 NP per µm² of SiO2
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Project funded by
Project Piranex
Project Coopera
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
project Piranex
S. Ansanay-Alex, Y. Chevolot, E. Laurenceau, F. Palazon, T. Géhin, E. Souteyrand…
J-F. Bryche, G. Barbillon, B. Bartenlian,
R. Gillibert, R. Yasukuni, M. Lamy de Lachapelle,
E. Maillart, A. Olivero
A. Olivero, J.F. Bryche, M. Sarkar, M. Besbes, J. Moreau and M. Canva
Surface functionalizations
Modelling & SPR imaging
Instrumentation
SERS measurements
Nanofabrication
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Institut des Nanotechnologies de Lyon UMR CNRS 5270 http://inl.cnrs.frETPMSE 2016 JP Cloarec 23 juin 2016
Merci de votre attention