Download - October 09 talk
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Reduction of proteostasis gene expression negatively impacts adult healthspan or increases life span,
depending on the environment
Angela SanchezCellular & Structural Biology
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Healthy LivingFauja Singh ,97 Philip Rabinowitz, 104 Mavis Lindgren, 90
What interventions can we use?
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Cool Temperatures Favors Healthy Long-Term Survival
Long Lifespan Short Lifespan
Cool Temperature Warm Temperature
(Lamb MJ, 1968) (Kibler HH, 1961)(Liu RK, 1973)
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Low Temperature Enhances Survival
• Enhance survival after heart attack(Varon J Chest
2008)
• Enhance survival after stroke (Kammersgaard LP J Am Heart Assoc
2002)
• Long-lived Individuals naturally lower CBT(Shock, NW
1984)MECHANISM FOR THIS IS UNKNOWN
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How does temperature affect survival in C. elegans ?
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What accounts for this difference?
• Molecular mechanism of acclimatization
• Which cellular processes are altered?
?
How can we find the cause of this?
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Temperature Dependent Survival in C. elegansPe
rcen
t Su
rviv
al
Days
25°C
15°C
25°C
15°C
Lifespan is doubled at 15°C
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Microarray Analysis
• Collaboration with S. Tavare’ (USC)
• Different from affymetrix software
• Calculated Background
• Not estimated
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Microarray Overview
• Post-development
• Look early before there is a difference
• Molecular mechanism of acclimatization
• Which cellular processes are altered?
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Microarray Overview
L1
L2
L3
L4
Immature
Development
Total RNA Total RNA
Mature
Visible Developmental Stage
15°C
15°C 25°C
Four Biological Samples
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Temperature Regulated Genes
19,762 Predicted Genes
16,896 Probes
386 Differentially Expressed
178
P<.01
208
Suggests part of acclimatization mechanism Transcriptional
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Temperature Regulated Genes
386 total altered genes
Gene Ontology
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Cellular Response To Temperature
REPRESSION of protein synthesis genesChanges in the activity of the endoplasmic reticulumREPRESSION of lysosomal proteasesDisproportionate impact on membrane associated proteins
REPRESSED
REPRESSED
ALTERED
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Cellular Response To Temperature
REPRESSED
REPRESSED
ALTERED
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Hypothesis
Temperature regulated proteases contribute to increased healthy survival observed at 15°C
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15°C Elevated Proteases mRNA
cpr-1 Cathepsin Bcpr-4 Cathepsin BW07B8.1 Cathepsin BF21D5.2 Cathepsin Bcpr-7 Cathepsin B
K10C2.1 Cathepsin AK10B2.2 Cathepsin A
asp-1 Cathepsin Dasp-3 Cathepsin Dasp-5 Cathepsin Easp-6 Cathepsin DF21F8.4 Cathepsin EK10C2.3 Cathepsin CC15C8.3 Cathepsin EY39B6A.24 Cathepsin D
Aspartyl Cysteine Serine
Classified by active site
31 in genome
39 in genome
75 in genome
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Is the array result true?
• Validation by QPCR • Designed primers• Tested • Assay three biological samples • Normalized to cyc-1 for control
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RT PCR of 15C elevated Proteases
asp-1
asp-3
asp-4
asp-6
F21F8
.4
K10C2.3
C15C8.3
Y39B6A.24
CPR-1CPR-4
W07B8.1
F21D5.2
F57F5
.1
K10B2.2
K10B2.10
1
2
3
4
5
6
7
8
9
Fold
Incr
ease
asp-5
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Specific Aims1. Elucidate the biological function of proteases
differentially expressed between 15°C and 25°C
2. Determine the effect of altered protease expression on the proteome
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Specific Aim One
1. Elucidate the function of differentially expressed proteases
a) Determine if reduction by RNAi shows a phenotype at 15°C or
25°C.
b) Determine if protease-eGFP transgenics shows a phenotype at
15°C or 25°C
c) Determine spatial and temporal expression of lifespan altering
proteases
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15°C Elevated Proteases mRNA
cpr-1cpr-4W07B8.1F21D5.2cpr-7
K10C2.1K10B2.2
asp-1asp-3asp-5asp-6F21F8.4K10C2.3C15C8.3Y39B6A.24
Aspartyl Cysteine Serine
(RNAi Library Ahringer et al. 2003)
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cpr-7 15°C day 2
cpr-7 Progressive Paralysis:Young
Control 15°C day 2
cpr-7 25°C day 2Control 25°C day 2
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cpr-7 15°C day 8Control 15°C day 8
cpr-7 25°C day 8Control 25°C day 8
cpr-7 Progressive Paralysis: Day 8
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cpr-7 Progressive Paralysis
(15⁰C) Day 8
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RNAi 15°C day 12
RNAi 25°C day 12Control 25°C day 12
Control 15°C day 12
Cpr-7 Progressive Paralysis: Day 12
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RNAi knockdown of cpr-7 results in paralysis at 15°C
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Conclusions
• Reduction of cpr-7 results in DECREASED health at 15C
• Results in 80-90% affected
• Reduction of cpr-7 may be BENEFICIAL at 25C
PARADOX
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Does cpr-7 RNAi impact lifespan?
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cpr-7 RNAi effect on lifespan
0 5 10 15 20 250
20
40
60
80
100
120
Controlcpr-7 RNAi
0 5 10 15 20 25 30 350
20
40
60
80
100
120
15°C
Controlcpr-7 RNAi
25°C
DECREASES INCREASES
OPPOSITE EFFECTS AT DIFFERENT TEMPERATURES
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Conclusions
• cpr-7 RNAi DECREASES lifespan at 15°C
• cpr-7 RNAi causes progressive paralysis at 15°C
• cpr-7 RNAi slightly INCREASES lifespan at 25°C
• Opposite effects at different temperatures
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daf-2 mutationtemperature15°C
25°C15°C
0
20
40
60
80
100
0 10 20 30 40 50 60
N2
daf-2(m41)
% S
urvi
val
Adult age (days)
It is a shared mechanism
Translation gene eif3A temperature regulated similarly in WT and 5 daf-2 alleles
Daf-2 independent.
Cpr-7 is both temperature and daf-2 regulated it is different in the daf-2 allleles
It is a distinct mechanism
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Daf-2 mutations
• are over 40 independently isolated alleles
•How to choose which ones
• Go by severity of phenotypes, particularly adult
•Choose some strong
•Some mild
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Low Temperature and Mutation of the daf-2 Gene are Similar for Many Traits
Temperature affects – development (rate and dauer formation) – metabolism – reproduction – life span
DAF-2 pathway affects – development (dauer formation and rate) – metabolism (oxygen consumption)– reproduction – life span
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Shared mechanisms?
How to sort this out
Use different alleles
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DAF-2 receptor
DAF-16
DAF-2 Signaling and mutations
m41G380E
m577C1042Y
Class I
m579R434C
m596G544S
e1370P1465S
Class II(strong) (mild)
Longevity
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Worm ins Genes
• 39 insulin-like loci identified in the genome
• ins-1 and ins-18 act as antagonists (Pierce et al., 2001)
• daf-28 is an agonist. Overexpression of ins-4 & -6 can suppress the daf-28 mutation, so they are predicted to function similarly. (Li et al., 2003)
• ins-7 acts as agonist (Murphy et al., 2003)
Is the regulation specific for these ins genes?
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Summary: Receptor Mutations Result in Multiple Changes in Insulin-like Signaling
Wild type (39 “insulin like” genes)
DAF-2 missense mutants- different amounts of agonist and antagonist ligand mRNAs. More receptor mRNA.
INS binding affinity changed?Signals transduced?
Altered downstream preferences?
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daf-2 Mutants Altered Temperature Response
daf-2 involved in acclimatization to temperatureunlike daf-2, temperature response is daf-16 independentLive longer, maintain temperature responseAltered temperature response(Reference et al.)
REMOVE DAF-16 lifespan line
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Daf-2 mutants respond to temperature differently
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Can daf-2 mutants sense temperature?
• Thermotaxis (Ttx) assay• AIY sensory neurons (FIND OUT NEURONS) • Migrate preferentially toward growth temperature• Will associate growth temperature with food• Learned behavior
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ttx-1 and ttx-3
Or cloned and where expressedCompare them too each other in table parallel
Cryophyllic or athermotactic this is what is important about them
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daf-2 ttx-assay
m41
e1370
m579
121416182022242628Wildtype
No difference (Sanchez, Takano, Larsen)
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Conclusion
• Adults carrying a daf-2 mutation do Not sensing temperature differently from wild type or from each other
• Mechanism for Age– In daf-2 mutant adults– In adults at cool or warm temperature– Is unlikely to originate from neuronal signals due
to sensation of temperature in the circuit that controls taxis to a particular temperature
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daf-2 mutationtemperature15°C
25°C15°C
0
20
40
60
80
100
0 10 20 30 40 50 60
N2
daf-2(m41)
% S
urvi
val
Adult age (days)
Shared or distinct mechanism?
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Number of Genes with Altered Expression in Response Temperature
N2 m577 m41 m596 m579 e13700
500
1000
1500
2000
2500
3000
3500
4000
179461 703 645 828
1618
208
441
779 8101048
1792
UP DOWN
Num
ber
of g
ene
(Curtis, Tavare’, Takano S. Larsen P. et al.)
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daf-2 Mutants Altered Temperature Response
Flip this to be like next one
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200
220
240
260
280
300
320
340
10 15 20 25 30 35 40 45 50
Age at Last Quartile (days)
N2
daf-16
daf-16; daf-2
fer-15
daf-2(m577)
daf-2(m41)
fer-15; daf-2
daf-2(m596)
daf-2(m579)
r=0.34, P=0.368Met
abol
ic R
ate
(pm
ol O
2 ind
ivid
ual-1
hou
r –1)
Shar
ed W
arm
Diff
eren
tially
Exp
ress
edGe
nes
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category number example
Secreted 24 Purple acid phosphatase, lysozyme, metalloproteinase,
Lysosomal 15 Sugar degradation, protease inhibitors
Fat 25 Lipid transport, desaturase lipid binding protein
Endoplasmic Reticulum 38 Endocytosis, lipid biosynthesis and degradation
C-type lectin 10
Udp-glucosyltransferase 3
Mitochondria 18 Thioredoxin, glutathione-s-transferase
Transport 22
Ion transport 7
Sugar transport 3
Lipid transport 4
Amino acid transport 3
Amino Acid Recycling 8 Histidine catabolism, Methionine salvage, pyrimidine degradation
Increased at 25C Daf-2 different from wildtype
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Category Number Examples
Neuronal 28 Jnk-1, mak-2, synaptic vesicle, jkk-1
ER/golgi 15 Endocytosis, glucosyl transferase
Integral membrane transport 19
cell swelling 2 osr-1 aqp-4
ion transport 9 Calcium and sodium transporters
lipid transport 3 lipid endocytosis
other 5 amino acid, lactate, transporter
lysosomal 3 atg-1 , cysteine protease,
muscle 3 Tropomoduline, myosin phosphatase
structural 5 act-4, act-3
Hedgehog related proteins 9 grl-5 grl-7 ptr-5 hyperdermis
Transcription Factors 8 fkh-7, jun-1, nhr-255, peb-1
About 160 differentially expressed in the strong alleles
Increased at 25C Daf-2 STRONG ALLELES only
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Daf-2 mutants accentuate wildtype response
• Increased fatty acid desaturases• Increased sugar binding proteins• Increased glucosyltransferases• Increased inhibition of translation• Skewing of lysosomal function away from
protein degradation and towards sugar degradation
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Daf-2 mutants have altered membranes
Ray’s fat data
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Do daf-2 alleles respond differently to temperature regulated RNAi?
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N2
m41
m577
m596
m579
e1370
0 5 10 15 20 25 30 35 400
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
1200 10 20 30 40 50 60
0
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
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0 5 10 15 20 250
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
N2
m41
m577
cpr-7 rnai
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
m596
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120 m579
e1370
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
eif3A RNAi 25C
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N2
m41
m577
m596
m579
e1370
0 5 10 15 20 25 30 35 400
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
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N2
m41
m577
m596
m579
e1370
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
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N2
m41
m577
m596
m579
e1370
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
0 10 20 30 40 50 600
20
40
60
80
100
120
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0 5 10 15 20 25 300
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
eif3A RNAi 25CN2
m41
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120m577
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120m596
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120 m579
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
e1370
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0 5 10 15 20 250
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 400
20
40
60
80
100
120
N2
m41
m577
eiF4?
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120 m596
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120 m579
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
e1370
eif3A RNAi 25C
![Page 61: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/61.jpg)
0 5 10 15 20 250
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 450
20
40
60
80
100
120
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120N2
m41
m577
m596
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120m579
e1370
0 5 10 15 20 25 30 35 40 45 500
20
40
60
80
100
120
eif3A RNAi 25C
![Page 62: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/62.jpg)
Allows to definite what context of different phenotypes
tie to molecular/cellular mechanism
![Page 63: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/63.jpg)
daf-2
++++++++++++++++++++
15C 25C
+++ WT benefits +/-
daf-2 (refined)
++++++++++++++++++++
![Page 64: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/64.jpg)
What is the Relationship between Metabolic Rate and Longevity?
![Page 65: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/65.jpg)
• larvae were raised at 15˚C, each of the 9 strains has a different adult life span expectancy
• young adults were placed at 15˚ or 22.5˚
• on day 4 adults were suspended in medium in the absence of E. coli in air-tight glass vials
• measurements were made after 7 hours with a polarographic oxygen electrode
Oxygen Consumption Protocol
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200
220
240
260
280
300
320
340
10 15 20 25 30 35 40 45 50
Metabolic Rate and Life Span at 22.5ºC
Age at Last Quartile (days)
N2
daf-16
daf-16; daf-2
fer-15
daf-2(m577)
daf-2(m41)
fer-15; daf-2
daf-2(m596)
daf-2(m579)
r=0.34, P=0.368Met
abol
ic R
ate
(pm
ol O
2 ind
ivid
ual-1
hou
r –1)
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200
220
240
260
280
300
320
340
10 20 30 40 50
r=0.22, P=0.577
N2
daf-16(m26)
daf-16; daf-2(m41)
fer-15(b26)daf-2(m577)
daf-2(m41)fer-15; daf-2(m41)
daf-2(m596)
daf-2(m579)
Metabolic Rate and Life Span at 15ºC
Age at Last Quartile (days)
Met
abol
ic R
ate
(pm
ol O
2 ind
ivid
ual-1
hou
r -1)
![Page 68: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/68.jpg)
Metabolic Rate and Longevity• there is not a correlation between oxygen consumption and
longevity in C. elegans
• reduction in metabolic rate alone is not the physiological mechanism for increase in adult longevity in the daf-2 mutants
• other metabolic events such as insulin-like sensitivity and lipid levels may contribute to the anti-aging mechanisms of the daf-2 mutations
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200
220
240
260
280
300
320
340
360
15 22.5
Temperature (ºC)
pmol
O2 i
ndiv
idua
l-1 h
our -1
N2fer-15daf-16
daf-2(m41)daf-2(m577)daf-2(m579)daf-2(m596)
Metabolic Rate Response to Temperature
non-Age:
Age:
![Page 70: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/70.jpg)
Shared mechanisms
daf-2 mutation temperature15°C
25°C15°C
0
20
40
60
80
100
0 10 20 30 40 50 60
N2
daf-2(m41)
% S
urvi
val
Adult age (days)
![Page 71: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/71.jpg)
Life of a protein
![Page 72: October 09 talk](https://reader035.vdocuments.mx/reader035/viewer/2022070314/58acad7d1a28ab68608b4eff/html5/thumbnails/72.jpg)
• Protein Synthesis• Lysosomal Proteases• Glucosyltransferases
Temperature Regulated GenesRepressed at 25C Elevated at 25C
• C-type lectins• Lysosomal Proteases• Fatty Acid Desaturases• Glucosyltransferases