![Page 1: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/1.jpg)
!
#Phinch: An interactive, exploratory data visualization framework for environmental
sequence data
@hollybik University of California, Davis (now) University of Birmingham, UK (soon)
![Page 2: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/2.jpg)
VERY DIFFICULT
Bik et al. 2012, Trends in Ecology and Evolution
![Page 3: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/3.jpg)
![Page 4: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/4.jpg)
“A Research-Driven Data Visualization Framework for High-Throughput Environmental Sequence Data”
![Page 5: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/5.jpg)
http://pitchinteractive.com @pitchinc
![Page 6: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/6.jpg)
“Pitch Interactive dissects large data sets in search of meaningful and often hidden patterns that serve to determine the shape
and form that best tells a story.”
![Page 7: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/7.jpg)
Goal: A web-based, scalable visualization framework for standard data formats
![Page 8: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/8.jpg)
• BIOM (json) files – OTU tables, metagenome datasets • Tab-delimited metadata files
![Page 9: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/9.jpg)
![Page 10: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/10.jpg)
![Page 14: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/14.jpg)
![Page 15: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/15.jpg)
![Page 16: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/16.jpg)
![Page 17: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/17.jpg)
![Page 18: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/18.jpg)
![Page 19: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/19.jpg)
![Page 20: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/20.jpg)
![Page 21: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/21.jpg)
Nitrate Levels (ppm)
Rela
tive
abun
danc
e (%
)
Tenacibaculum spp.
Sabreen Aulakh, Eisen lab undergrad
![Page 22: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/22.jpg)
Future Work• Explore phylogenetic visualizations (e.g. probability
distributions from tree placement of short reads)
• Expand visualization framework to include statistical analyses, plugin tools, public API
• Self-sustaining, open source user/developer community
![Page 23: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/23.jpg)
NSF Research Coordination Network
RCN EukHiTShttp://eukhits.wordpress.com
![Page 24: JASM2014 talk - "Phinch: An interactive, exploratory data visualization for enviornmental sequence data"](https://reader034.vdocuments.mx/reader034/viewer/2022052619/55628e93d8b42a68128b4ad1/html5/thumbnails/24.jpg)
Acknowledgements :
:
Jonathan Eisen Aaron Darling Guillaume Jospin Dongying Wu David Coil :
: Further Information
• @Dr_Bik – updates posted to Twitter
• Grant proposal now posted on Figshare!
!!!:
Wesley Grubbs, Shujian Bu (Pitch Interactive)
Acknowledgements