![Page 1: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/1.jpg)
Doug RaifordLesson 2
![Page 2: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/2.jpg)
Material of life Heritable traits
The job of DNA is to produce proteins Involved in virtually every
chemical reaction ▪ Enzymes catalyze reactions
Structure ▪ muscle, cellulose, etc.
Every cell has the same DNA Yet not all cells perform
same job2Background
![Page 3: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/3.jpg)
Double stranded Sequence of nucleotides
Named for their nitrogenous bases▪ Adenine▪ Guanine▪ Cytosine▪ Thymine
Strands are complementary Gs with Cs, As with Ts Called base-pairs
3Background
![Page 4: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/4.jpg)
Article: molecular structure of nucleic acids Published in Nature in
April of 1953 http://www.nature.com/natur
e/dna50/watsoncrick.pdf One page Possibly the most
famous passage in all of science
“It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material.”
“It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material.”
4Background
![Page 5: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/5.jpg)
Carbons numbered
Synthesis 5’ to 3’
Strands are antiparallel
Reverse complement
Deoxyribonucleic acid
5Background
![Page 6: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/6.jpg)
Can be represented as a string of characters
1 aataaatact tacaggtatt ccacctgaaa ctctttctat gaatgacttt caagtctata 61 tcctatattt atcctcaata aaatatgcac aatagatctc tactgagaaa actttatatt121 ttagaagcaa ttcatctccc ttttaaaata caaacttgca taggattgcc ataaattaat181 gcacctaaaa ttaagtcgtt tctatgaaat ttattttagg tgtgaaatta tatattaggt241 gtacaattag ccataccatt ccgacaatat cgacatagga atattgagta gaacaagatg301 taccattatt agcttctggg ttggcataag ggaatacagg caaagactta aacctattcg361 gactctgtag agctggctca atattcaaaa gaataatgtc cctcgataca agcatcagaa421 tagagatcgc gctctttaca cctattaaat acatcatcta aaacaactgc atattgttct481 atgctcaagc tgtaagcatc aatatctagg caagctcatt gactaaaaca gtctctatcg541 aaatgttcca gctcaattca aggtcgagat agtacaccta ttaaattaat ttcataccta601 taaattcgag attcccagta gtctattggt gactacatca atcgggcaac accaccatgg
6Background
![Page 7: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/7.jpg)
DNA strand: chromosomeGenome: all chromosomes combined
7Background
![Page 8: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/8.jpg)
Gene is a sub-region of DNA As mentioned: job of a gene is to produce protein
Each gene is associated with a particular protein
8Background
![Page 9: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/9.jpg)
Two step process Transcription Translation
Central dogma
DNA RNA Proteintranscription translation
9Background
![Page 10: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/10.jpg)
RNA polymerase Protein complex
Free-floating nucleotides stitches together
Result is single strand of RNA Messenger RNA mRNA
Exact copy Hence transcription
10Background
![Page 11: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/11.jpg)
Strand of amino acids20 common aa’sFolds into shapeShape dictates
function
11Background
![Page 12: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/12.jpg)
mRNA: 4 nucleotide alphabetProtein: 20 amino acid alphabetHow translate?
Triplet nucleotides “code” for amino acid Codon
atg Methionineatg Methionine
12Background
![Page 13: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/13.jpg)
64 combinations of 3 nucleotidesBut only 20 amino acidsSome amino acids are coded for by
multiple codons
CTACTCCTGCTTTTATTG
Leucine
13Background
![Page 14: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/14.jpg)
Ribosome Protein and RNA
complexAAs delivered
by Transfer RNA (tRNA)
14Background
![Page 15: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/15.jpg)
TranslationDNA Replication
15Background
![Page 16: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/16.jpg)
Central dogma
DNA RNA Proteintranscriptiontranslation
RNA Polymerase
Free-floating nt’s
Ribosome
tRNAs
16Background
![Page 17: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/17.jpg)
Use the cell’s own machinery for replicating DNA
Polymerase chain reaction (PCR) Free-floating nucleotides DNA Polymerase
Amplifies a single or small number of strands into millions
17Background
![Page 18: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/18.jpg)
Instead of free floating ATP, CTP, TTP, and GTP Small percentage is
dideoxy variant Stops transcription if
encounters one of these
All fragments end with A, C, T, or G depending on test tube
18Background
![Page 19: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/19.jpg)
Dye-labeled chain terminators: can do all in one chamber
Capillary electrophoresis instead of gel
19Background
![Page 20: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/20.jpg)
Sequence termination techniques Only 700-900 base-pairs at a time Very time consuming and labor intensive
Slow: human genome would take 8,000 years
20Background
![Page 21: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/21.jpg)
Breakup into random sized fragments
Determine sequences of fragments
Reassemble algorithmically
High-throughput
Look for regions of overlap
21Background
![Page 22: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/22.jpg)
How the polymerase knows where to attach The term expression: phenotypical expression Now equated to protein production rate
Promoter Region
Coding regionTerminator
Region
RNA polymerase
Start Codon‘ATG’ = Methionine
Stop Codon: non coding‘TAA’, ‘TAG’,
or ‘TGA’ 22Background
![Page 23: Doug Raiford Lesson 2. Material of life Heritable traits The job of DNA is to produce proteins Involved in virtually every chemical reaction ▪](https://reader035.vdocuments.mx/reader035/viewer/2022062805/5697c01d1a28abf838cd07d8/html5/thumbnails/23.jpg)
23Background